Strain Overview | |
---|---|
Organism Name | Burkholderia cenocepacia C14 |
Species | Burkholderia cenocepacia |
Strain | C14 |
Description/Title | Pathogen: clinical or host-associated sample from Burkholderia cenocepacia |
Annotated Genes | 6212 |
Partial Genes | 1116 |
Host Information | |
---|---|
Host Species Taxonomic Name | Homo sapiens |
Host Species Common Name | human |
Host Species Taxonomy ID | 9606 |
Host Species Disease | cystic fibrosis |
Geographic Location | |
---|---|
Location Name | Australia: Brisbane |
Isolation Source | lungs of cystic fibrosis patient C |
Latitude/Longitude | 27.4667 S 153.0333 E |
Sample Provider | |
---|---|
Name | Kate Ormerod |
kate_ormerod@hotmail.com | |
Institution | University of Queensland |
Date Collected | 06-Mar-2013 |
Database | Scheme | Sequence Type | Alleles | |||||||
---|---|---|---|---|---|---|---|---|---|---|
PubMLST | bcc | 434 |
|
|||||||
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
---|---|
Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | 1002 |
Contig N50 | 13976 |
Assembly Level | Contig |
Percent GC |
Cross-References | |
---|---|
NCBI BioSample Accession | SAMN03753648 |
NCBI Taxonomy ID | 95486 |
NCBI Bioprojects |
Related Data | |
---|---|
Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Feature | Count |
---|---|
gene | 6212 |
CDS | 6174 |
pseudo | 714 |
tRNA | 33 |
rRNA | 3 |
ncRNA | 1 |
Localization | Count |
---|---|
Cytoplasmic | 2736 |
Cytoplasmic Membrane | 1347 |
Periplasmic | 213 |
Outer Membrane | 138 |
Extracellular | 75 |
Unknown | 1521 |
Unknown (This protein may have multiple localization sites) | 184 |
Flagellar | 18 |
Fimbrial | 4 |
T3SS | 1 |
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |