Burkholderia cenocepacia C14

Strain Overview
Organism Name Burkholderia cenocepacia C14
Species Burkholderia cenocepacia
Strain C14
Description/Title Pathogen: clinical or host-associated sample from Burkholderia cenocepacia
Annotated Genes 6212
Partial Genes 1116
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease cystic fibrosis
Geographic Location
Location Name Australia: Brisbane
Isolation Source lungs of cystic fibrosis patient C
Latitude/Longitude 27.4667 S 153.0333 E
Sample Provider
Name Kate Ormerod
E-mail kate_ormerod@hotmail.com
Institution University of Queensland
Date Collected 06-Mar-2013

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 434
recA
49
atpD
16
trpB
257
gltB
254
lepA
273
gyrB
362
phaC
166
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs 1002
Contig N50 13976
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03753648
NCBI Taxonomy ID 95486
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 6212
CDS 6174
pseudo 714
tRNA 33
rRNA 3
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2736
Cytoplasmic Membrane 1347
Periplasmic 213
Outer Membrane 138
Extracellular 75
Unknown 1521
Unknown (This protein may have multiple localization sites) 184
Flagellar 18
Fimbrial 4
T3SS 1

Replicons

1002 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF