Burkholderia cenocepacia 891_BCEN

Strain Overview
Organism Name Burkholderia cenocepacia 891_BCEN
Species Burkholderia cenocepacia
Strain 891_BCEN
Description/Title Pathogen: clinical or host-associated sample from Burkholderia cenocepacia
Annotated Genes 6657
Partial Genes 356
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease missing
Geographic Location
Location Name USA: WA
Isolation Source missing
Latitude/Longitude missing
Sample Provider
Name Stephen Salipante
E-mail stevesal@uw.edu
Institution University of Washington
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 242
atpD
16
gltB
11
phaC
6
trpB
12
gyrB
228
lepA
11
recA
14
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs 381
Contig N50 59641
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03198098
NCBI Taxonomy ID 95486
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 6657
CDS 6616
pseudo 292
tRNA 37
rRNA 2
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2952
Cytoplasmic Membrane 1412
Periplasmic 224
Outer Membrane 149
Extracellular 82
Unknown 1687
Unknown (This protein may have multiple localization sites) 197
Flagellar 18
Fimbrial 1
T3SS 2

Replicons

381 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF