Burkholderia cenocepacia 881_BCEN

Strain Overview
Organism Name Burkholderia cenocepacia 881_BCEN
Species Burkholderia cenocepacia
Strain 881_BCEN
Description/Title Pathogen: clinical or host-associated sample from Burkholderia cenocepacia
Annotated Genes 6614
Partial Genes 609
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease missing
Geographic Location
Location Name USA: WA
Isolation Source missing
Latitude/Longitude missing
Sample Provider
Name Stephen Salipante
E-mail stevesal@uw.edu
Institution University of Washington
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 242
recA
14		 lepA
11		 trpB
12		 phaC
6		 atpD
16		 gyrB
228		 gltB
11
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001059305.1
Assembly Status latest
Scaffolds
Contigs 583
Contig N50 31866
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03198087
NCBI Taxonomy ID 95486
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6614
CDS 6573
pseudo 469
tRNA 37
rRNA 2
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2937
Cytoplasmic Membrane 1392
Periplasmic 222
Outer Membrane 147
Extracellular 81
Unknown 1690
Unknown (This protein may have multiple localization sites) 191
Flagellar 19
Fimbrial 1
T3SS 2

Replicons

583 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF