Strain Overview | |
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Organism Name | Burkholderia cenocepacia 34_BCEN |
Species | Burkholderia cenocepacia |
Strain | 34_BCEN |
Description/Title | Pathogen: clinical or host-associated sample from Burkholderia cenocepacia |
Annotated Genes | 6363 |
Partial Genes | 2258 |
Host Information | |
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Host Species Taxonomic Name | Homo sapiens |
Host Species Common Name | human |
Host Species Taxonomy ID | 9606 |
Host Species Disease | missing |
Geographic Location | |
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Location Name | USA: WA |
Isolation Source | missing |
Latitude/Longitude | missing |
Sample Provider | |
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Name | Stephen Salipante |
stevesal@uw.edu | |
Institution | University of Washington |
Date Collected |
Database | Scheme | Sequence Type | Alleles | |||||||
---|---|---|---|---|---|---|---|---|---|---|
PubMLST | bcc | 242 |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | 1906 |
Contig N50 | 7717 |
Assembly Level | Scaffold |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN03197531 |
NCBI Taxonomy ID | 95486 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Feature | Count |
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gene | 6363 |
CDS | 6327 |
pseudo | 1638 |
tRNA | 32 |
rRNA | 2 |
ncRNA | 1 |
Localization | Count |
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Cytoplasmic | 2791 |
Cytoplasmic Membrane | 1328 |
Periplasmic | 201 |
Outer Membrane | 136 |
Extracellular | 77 |
Unknown | 1695 |
Unknown (This protein may have multiple localization sites) | 173 |
Flagellar | 19 |
Fimbrial | 1 |
T3SS | 2 |
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |