Burkholderia cenocepacia 34_BCEN

Strain Overview
Organism Name Burkholderia cenocepacia 34_BCEN
Species Burkholderia cenocepacia
Strain 34_BCEN
Description/Title Pathogen: clinical or host-associated sample from Burkholderia cenocepacia
Annotated Genes 6363
Partial Genes 2258
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease missing
Geographic Location
Location Name USA: WA
Isolation Source missing
Latitude/Longitude missing
Sample Provider
Name Stephen Salipante
E-mail stevesal@uw.edu
Institution University of Washington
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 242
recA
14
gyrB
228
lepA
11
phaC
6
gltB
11
trpB
12
atpD
16
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs 1906
Contig N50 7717
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN03197531
NCBI Taxonomy ID 95486
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 6363
CDS 6327
pseudo 1638
tRNA 32
rRNA 2
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2791
Cytoplasmic Membrane 1328
Periplasmic 201
Outer Membrane 136
Extracellular 77
Unknown 1695
Unknown (This protein may have multiple localization sites) 173
Flagellar 19
Fimbrial 1
T3SS 2

Replicons

1831 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF