Burkholderia cenocepacia 1178_BCEN

Strain Overview
Organism Name Burkholderia cenocepacia 1178_BCEN
Species Burkholderia cenocepacia
Strain 1178_BCEN
Description/Title Pathogen: clinical or host-associated sample from Burkholderia cenocepacia
Annotated Genes 7420
Partial Genes 1240
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease missing
Geographic Location
Location Name USA: WA
Isolation Source missing
Latitude/Longitude missing
Sample Provider
Name Stephen Salipante
E-mail stevesal@uw.edu
Institution University of Washington
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc -
lepA
665?		 recA
4		 gyrB
44		 atpD
5		 gltB
4		 phaC
4		 trpB
48
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001052915.1
Assembly Status latest
Scaffolds
Contigs 1071
Contig N50 20469
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03197135
NCBI Taxonomy ID 95486
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 7420
CDS 7382
pseudo 893
tRNA 34
rRNA 2
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 3097
Cytoplasmic Membrane 1547
Periplasmic 233
Outer Membrane 171
Extracellular 103
Unknown 2012
Unknown (This protein may have multiple localization sites) 225
Flagellar 1

Replicons

1071 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF