Strain Overview | |
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Organism Name | Burkholderia cenocepacia CEIB S5-1 |
Species | Burkholderia cenocepacia |
Strain | CEIB S5-1 |
Description/Title | Microbe sample from Burkholderia cenocepacia |
Annotated Genes | 6941 |
Partial Genes | 163 |
Host Information | |
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Host Species Taxonomic Name |
Geographic Location | |
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Location Name | Mexico: Tepoztlan, Morelos |
Isolation Source | crop soil |
Latitude/Longitude | 18.940556 N 99.118056 W |
Environmental Material (?) | soil |
Sample Provider | |
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Name | Edgar Dantan-Gonzalez |
edantan@uaem.mx | |
Institution | Universidad Autonoma del Estado de Morelos |
Date Collected | 2011-02-08 |
Database | Scheme | Sequence Type | Alleles | |||||||
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PubMLST | bcc | - |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | 177 |
Contig N50 | 170699 |
Assembly Level | Contig |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN03224187 |
NCBI Taxonomy ID | 95486 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Feature | Count |
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gene | 6941 |
CDS | 6881 |
pseudo | 196 |
tRNA | 55 |
rRNA | 3 |
ncRNA | 1 |
Localization | Count |
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Cytoplasmic | 3018 |
Cytoplasmic Membrane | 1514 |
Periplasmic | 225 |
Outer Membrane | 171 |
Extracellular | 108 |
Unknown | 1652 |
Unknown (This protein may have multiple localization sites) | 209 |
Flagellar | 39 |
Fimbrial | 10 |
T3SS | 4 |
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |