Strain Overview | |
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Organism Name | Burkholderia anthina AZ-4-2-10-S1-D7 |
Species | Burkholderia anthina |
Strain | AZ-4-2-10-S1-D7 |
Description/Title | Pathogen: environmental/food/other sample from Burkholderia anthina |
Annotated Genes | 6325 |
Partial Genes | 47 |
Host Information | |
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Host Species Taxonomic Name | unknown |
Geographic Location | |
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Location Name | USA: Tucson, Pima, AZ |
Isolation Source | soil |
Latitude/Longitude | 32.0401973286826 N 110.564982129428 W |
Sample Provider | |
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Name | Jason Sahl |
jasonsahl@gmail.com | |
Institution | Northern Arizona University |
Date Collected | 2012 |
Database | Scheme | Sequence Type | Alleles | |||||||
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PubMLST | bcc | - |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | 4 |
Contig N50 | 2118531 |
Assembly Level | Chromosome |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN03449213 |
NCBI Taxonomy ID | 179879 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Feature | Count |
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gene | 6325 |
CDS | 6231 |
pseudo | 75 |
tRNA | 71 |
rRNA | 19 |
ncRNA | 3 |
tmRNA | 1 |
Localization | Count |
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Cytoplasmic | 2737 |
Cytoplasmic Membrane | 1344 |
Periplasmic | 213 |
Outer Membrane | 152 |
Extracellular | 90 |
Unknown | 1514 |
Unknown (This protein may have multiple localization sites) | 190 |
Flagellar | 24 |
Fimbrial | 7 |
T3SS | 4 |
Name | Length | GC | |
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Burkholderia anthina strain AZ-4-2-10-S1-D7 chromosome 1, complete sequence, whole genome shotgun sequence. | 3550762 bp | 67.1% |
Replicon details
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Burkholderia anthina strain AZ-4-2-10-S1-D7 chromosome 3, complete sequence, whole genome shotgun sequence. | 963101 bp | 67.7% |
Replicon details
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Burkholderia anthina strain AZ-4-2-10-S1-D7 AZ-4-2-10-S1-D7_4, whole genome shotgun sequence. | 2118531 bp | 66.9% |
Replicon details
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Burkholderia anthina strain AZ-4-2-10-S1-D7 AZ-4-2-10-S1-D7_5, whole genome shotgun sequence. | 640657 bp | 68.1% |
Replicon details
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Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |