| Strain Overview | |
|---|---|
| Organism Name | Burkholderia anthina MSMB1506WGS |
| Species | Burkholderia anthina |
| Strain | MSMB1506WGS |
| Description/Title | Pathogen: environmental/food/other sample from Burkholderia anthina |
| Annotated Genes | 6498 |
| Partial Genes | 94 |
| Host Information | |
|---|---|
| Host Species Taxonomic Name | unknown |
| Geographic Location | |
|---|---|
| Location Name | Australia: Northern Territory |
| Isolation Source | soil |
| Latitude/Longitude | 19.49 S 132.55 E |
| Sample Provider | |
|---|---|
| Name | Jason Sahl |
| jasonsahl@gmail.com | |
| Institution | Northern Arizona University |
| Date Collected | 2010 |
| Database | Scheme | Sequence Type | Alleles | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| PubMLST | bcc | 775 |
|
|||||||
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||||||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | 78 |
| Contig N50 | 225189 |
| Assembly Level | Contig |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN03449491 |
| NCBI Taxonomy ID | 179879 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 6498 |
| CDS | 6422 |
| pseudo | 114 |
| tRNA | 61 |
| rRNA | 10 |
| ncRNA | 4 |
| tmRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2794 |
| Cytoplasmic Membrane | 1368 |
| Periplasmic | 218 |
| Outer Membrane | 157 |
| Extracellular | 92 |
| Unknown | 1619 |
| Unknown (This protein may have multiple localization sites) | 185 |
| Flagellar | 24 |
| Fimbrial | 10 |
| T3SS | 4 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |