Burkholderia anthina MSMB0848

Strain Overview
Organism Name Burkholderia anthina MSMB0848
Species Burkholderia anthina
Strain MSMB0848
Description/Title Pathogen: environmental/food/other sample from Burkholderia anthina
Annotated Genes 6607
Partial Genes 102
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Australia: Northern Territory
Isolation Source soil
Latitude/Longitude 19.49 S 132.55 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2010

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 775
atpD
320		 gltB
367		 phaC
295		 gyrB
554		 recA
339		 trpB
205		 lepA
385
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001524825.1
Assembly Status latest
Scaffolds
Contigs 63
Contig N50 274458
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449277
NCBI Taxonomy ID 179879
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6607
CDS 6523
pseudo 116
tRNA 62
rRNA 17
ncRNA 4
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2827
Cytoplasmic Membrane 1385
Periplasmic 223
Outer Membrane 163
Extracellular 89
Unknown 1659
Unknown (This protein may have multiple localization sites) 188
Flagellar 24
Fimbrial 10
T3SS 4

Replicons

63 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF