Strain Overview | |
---|---|
Organism Name | Burkholderia anthina MSMB0849 |
Species | Burkholderia anthina |
Strain | MSMB0849 |
Description/Title | Pathogen: environmental/food/other sample from Burkholderia anthina |
Annotated Genes | 6442 |
Partial Genes | 96 |
Host Information | |
---|---|
Host Species Taxonomic Name | unknown |
Geographic Location | |
---|---|
Location Name | Australia: Northern Territory |
Isolation Source | soil |
Latitude/Longitude | 19.49 S 132.55 E |
Sample Provider | |
---|---|
Name | Jason Sahl |
jasonsahl@gmail.com | |
Institution | Northern Arizona University |
Date Collected | 2010 |
Database | Scheme | Sequence Type | Alleles | |||||||
---|---|---|---|---|---|---|---|---|---|---|
PubMLST | bcc | 775 |
|
|||||||
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
---|---|
Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | 64 |
Contig N50 | 227491 |
Assembly Level | Contig |
Percent GC |
Cross-References | |
---|---|
NCBI BioSample Accession | SAMN03449278 |
NCBI Taxonomy ID | 179879 |
NCBI Bioprojects |
Related Data | |
---|---|
Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Feature | Count |
---|---|
gene | 6442 |
CDS | 6365 |
pseudo | 113 |
tRNA | 60 |
rRNA | 12 |
ncRNA | 4 |
tmRNA | 1 |
Localization | Count |
---|---|
Cytoplasmic | 2786 |
Cytoplasmic Membrane | 1364 |
Periplasmic | 219 |
Outer Membrane | 159 |
Extracellular | 90 |
Unknown | 1572 |
Unknown (This protein may have multiple localization sites) | 186 |
Flagellar | 24 |
Fimbrial | 10 |
T3SS | 4 |
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |