Burkholderia anthina AZ-4-2-30-S1-D7

Strain Overview
Organism Name Burkholderia anthina AZ-4-2-30-S1-D7
Species Burkholderia anthina
Strain AZ-4-2-30-S1-D7
Description/Title Pathogen: environmental/food/other sample from Burkholderia anthina
Annotated Genes 6260
Partial Genes 113
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name USA: Tucson, Pima, AZ
Isolation Source soil
Latitude/Longitude 32.0401973286826 N 110.564982129428 W
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2012

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc -
gyrB
~854		 atpD
~377		 phaC
~295		 gltB
~274		 recA
~540		 lepA
~611		 trpB
205
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001523905.1
Assembly Status latest
Scaffolds
Contigs 85
Contig N50 190666
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449214
NCBI Taxonomy ID 179879
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6260
CDS 6191
pseudo 114
tRNA 56
rRNA 8
ncRNA 4
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2719
Cytoplasmic Membrane 1335
Periplasmic 213
Outer Membrane 154
Extracellular 91
Unknown 1503
Unknown (This protein may have multiple localization sites) 187
Flagellar 24
Fimbrial 7
T3SS 4

Replicons

85 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF