Strain Overview | |
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Organism Name | Burkholderia ambifaria RZ2MS16 |
Species | Burkholderia ambifaria |
Strain | RZ2MS16 |
Description/Title | Microbe sample from Burkholderia ambifaria |
Annotated Genes | 6986 |
Partial Genes | 197 |
Host Information | |
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Host Species Taxonomic Name | Paullinia cupana |
Host Species Common Name | Paullinia cupana |
Host Species Tissue Sampled | Rhizosfere |
Geographic Location | |
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Location Name | Brazil: Maues - AM |
Isolation Source | Rhizosphere |
Latitude/Longitude | 3.3244 S 57.4130 W |
Sample Provider | |
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Name | Bruna Batista |
bruna.biotec@hotmail.com | |
Institution | ESALQ/USP |
Date Collected | Nov-2010 |
Database | Scheme | Sequence Type | Alleles | |||||||
---|---|---|---|---|---|---|---|---|---|---|
PubMLST | bcc | - |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | 83 |
Contig N50 | 242048 |
Assembly Level | Scaffold |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN04103537 |
NCBI Taxonomy ID | 152480 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Feature | Count |
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gene | 6986 |
CDS | 6910 |
pseudo | 226 |
tRNA | 63 |
rRNA | 11 |
ncRNA | 1 |
Localization | Count |
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Cytoplasmic | 3084 |
Cytoplasmic Membrane | 1429 |
Periplasmic | 217 |
Outer Membrane | 138 |
Extracellular | 77 |
Unknown | 1777 |
Unknown (This protein may have multiple localization sites) | 193 |
Flagellar | 23 |
Fimbrial | 6 |
T3SS | 2 |
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |