Burkholderia ambifaria RZ2MS16

Strain Overview
Organism Name Burkholderia ambifaria RZ2MS16
Species Burkholderia ambifaria
Strain RZ2MS16
Description/Title Microbe sample from Burkholderia ambifaria
Annotated Genes 6986
Partial Genes 197
Host Information
Host Species Taxonomic Name Paullinia cupana
Host Species Common Name Paullinia cupana
Host Species Tissue Sampled Rhizosfere
Geographic Location
Location Name Brazil: Maues - AM
Isolation Source Rhizosphere
Latitude/Longitude 3.3244 S 57.4130 W
Sample Provider
Name Bruna Batista
E-mail bruna.biotec@hotmail.com
Institution ESALQ/USP
Date Collected Nov-2010

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc -
recA
549
trpB
591
atpD
481
phaC
449
lepA
~594
gltB
~634
gyrB
950
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs 83
Contig N50 242048
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN04103537
NCBI Taxonomy ID 152480
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 6986
CDS 6910
pseudo 226
tRNA 63
rRNA 11
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 3084
Cytoplasmic Membrane 1429
Periplasmic 217
Outer Membrane 138
Extracellular 77
Unknown 1777
Unknown (This protein may have multiple localization sites) 193
Flagellar 23
Fimbrial 6
T3SS 2

Replicons

82 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF