Burkholderia ambifaria RZ2MS16

Strain Overview
Organism Name Burkholderia ambifaria RZ2MS16
Species Burkholderia ambifaria
Strain RZ2MS16
Subspecific Genetic Lineage
Description/Title Microbe sample from Burkholderia ambifaria
Scaffolds
Contigs 83
Contig N50 242048
Assembly Level Scaffold
Percent GC
Annotated Genes 6986
References
Partial Genes 197
Cross-References
NCBI BioSample Accession SAMN04103537
NCBI Biosample ID
NCBI Taxonomy ID 152480
GOLD Accession
NCBI Bioprojects
NCBI Sequencing Assay
NCBI Assembly
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 6986
CDS 6910
pseudo 226
tRNA 63
rRNA 11
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 3084
Cytoplasmic Membrane 1429
Periplasmic 217
Outer Membrane 138
Extracellular 77
Unknown 1777
Unknown (This protein may have multiple localization sites) 193
Flagellar 23
Fimbrial 6
T3SS 2
Sample Provider
Name Bruna Batista
E-mail bruna.biotec@hotmail.com
Institution ESALQ/USP
Date Collected Nov-2010
Geographic Location
Location Name Brazil: Maues - AM
Isolation Source Rhizosphere
Latitude/Longitude 3.3244 S 57.4130 W
Host Information
Host Species Taxonomic Name Paullinia cupana
Host Species Common Name Paullinia cupana
Host Species Tissue Sampled Rhizosfere

Replicons

82 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TAB CSV GBK EMBL GFF3 GFF3 + sequence GTF

Download Intergenic Region Annotations

File also contains gene annotations

GTF