| Strain Overview | |
|---|---|
| Organism Name | Burkholderia sp. A9 A9 |
| Species | Burkholderia sp. A9 |
| Strain | A9 |
| Description/Title | Microbe sample from Burkholderia sp. A9 |
| Annotated Genes | 3126 |
| Partial Genes | 197 |
| Host Information | |
|---|---|
| Host Species Taxonomic Name |
| Geographic Location | |
|---|---|
| Location Name | Malaysia: Rimba Ilmu |
| Isolation Source | Soil |
| Sample Provider | |
|---|---|
| Name | Xin Yue Chan |
| xinyuechan@um.edu.my | |
| Institution | University of Malaya |
| Date Collected | 01-Aug-2010 |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | 98 |
| Contig N50 | 136739 |
| Assembly Level | Contig |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN03174117 |
| NCBI Taxonomy ID | 1365108 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 3126 |
| CDS | 3074 |
| pseudo | 24 |
| tRNA | 23 |
| rRNA | 4 |
| ncRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 1369 |
| Cytoplasmic Membrane | 666 |
| Periplasmic | 128 |
| Outer Membrane | 63 |
| Extracellular | 37 |
| Unknown | 746 |
| Unknown (This protein may have multiple localization sites) | 67 |
| Flagellar | 5 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |