Strain Overview | |
---|---|
Organism Name | Burkholderia pseudomallei MSHR435 |
Species | Burkholderia pseudomallei |
Strain | MSHR435 |
Description/Title | Microbe sample from Burkholderia pseudomallei MSHR435 |
Annotated Genes | 6182 |
Partial Genes | 132 |
Host Information | |
---|---|
Host Species Taxonomic Name | Homo sapiens |
Host Species Common Name | human |
Host Species Taxonomy ID | 9606 |
Geographic Location | |
---|---|
Location Name | Australia |
Isolation Source | clinical isolate |
Sample Provider | |
---|---|
Name | Hajnalka Daligault |
hajkis@lanl.gov | |
Institution | Los Alamos National Laboratory |
Date Collected | unknown |
Database | Scheme | Sequence Type | Alleles | |||||||
---|---|---|---|---|---|---|---|---|---|---|
PubMLST | bpseudomallei | - |
|
|||||||
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
---|---|
Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | 65 |
Contig N50 | 237437 |
Assembly Level | Chromosome |
Percent GC |
Cross-References | |
---|---|
NCBI BioSample Accession | SAMN02999478 |
NCBI Taxonomy ID | 1435985 |
NCBI Bioprojects |
Related Data | |
---|---|
Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Genome Browsers* | |
---|---|
Burkholderia pseudomallei MSHR435 chromosome 1, whole genome shotgun sequence. | |
Burkholderia pseudomallei MSHR435 chromosome 2, whole genome shotgun sequence. |
Feature | Count |
---|---|
gene | 6182 |
CDS | 5968 |
pseudo | 145 |
tRNA | 55 |
rRNA | 10 |
ncRNA | 1 |
Localization | Count |
---|---|
Cytoplasmic | 2474 |
Cytoplasmic Membrane | 1191 |
Periplasmic | 187 |
Outer Membrane | 138 |
Extracellular | 99 |
Unknown | 1748 |
Unknown (This protein may have multiple localization sites) | 168 |
Flagellar | 21 |
Fimbrial | 5 |
T3SS | 1 |
Name | Length | GC | |
---|---|---|---|
Burkholderia pseudomallei MSHR435 chromosome 1, whole genome shotgun sequence. | 3837469 bp | 67.7% |
Replicon details
|
Burkholderia pseudomallei MSHR435 chromosome 2, whole genome shotgun sequence. | 3295773 bp | 68.2% |
Replicon details
|
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |