Strain Overview | |
---|---|
Organism Name | Burkholderia pseudomallei MSHR3965 |
Species | Burkholderia pseudomallei |
Strain | MSHR3965 |
Description/Title | Microbe sample from Burkholderia pseudomallei MSHR3965 |
Annotated Genes | 6295 |
Partial Genes | 68 |
Host Information | |
---|---|
Host Species Taxonomic Name |
Geographic Location | |
---|---|
Location Name | Australia |
Isolation Source | environmental sample |
Latitude/Longitude | 12.7900970 S 132.1780710 E |
Sample Provider | |
---|---|
Name | Hajnalka Daligault |
hajkis@lanl.gov | |
Institution | Los Alamos National Laboratory |
Date Collected | unknown |
Database | Scheme | Sequence Type | Alleles | |||||||
---|---|---|---|---|---|---|---|---|---|---|
PubMLST | bpseudomallei | 846 |
|
|||||||
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
---|---|
Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | 2 |
Contig N50 | 3968047 |
Assembly Level | Chromosome with gaps |
Percent GC |
Cross-References | |
---|---|
NCBI BioSample Accession | SAMN02951657 |
NCBI Taxonomy ID | 1435372 |
NCBI Bioprojects |
Related Data | |
---|---|
Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Feature | Count |
---|---|
gene | 6295 |
CDS | 6136 |
pseudo | 86 |
tRNA | 60 |
rRNA | 12 |
ncRNA | 1 |
Localization | Count |
---|---|
Cytoplasmic | 2547 |
Cytoplasmic Membrane | 1237 |
Periplasmic | 199 |
Outer Membrane | 143 |
Extracellular | 101 |
Unknown | 1766 |
Unknown (This protein may have multiple localization sites) | 174 |
Flagellar | 33 |
Fimbrial | 7 |
T3SS | 4 |
Name | Length | GC | |
---|---|---|---|
Burkholderia pseudomallei MSHR3965 chromosome 1. | 3968347 bp | 68.0% |
Replicon details
|
Burkholderia pseudomallei MSHR3965 chromosome 2, complete sequence. | 3312394 bp | 68.1% |
Replicon details
|
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |