Burkholderia pseudomallei MSHR3965

Strain Overview
Organism Name Burkholderia pseudomallei MSHR3965
Species Burkholderia pseudomallei
Strain MSHR3965
Description/Title Microbe sample from Burkholderia pseudomallei MSHR3965
Annotated Genes 6295
Partial Genes 68
Host Information
Host Species Taxonomic Name
Geographic Location
Location Name Australia
Isolation Source environmental sample
Latitude/Longitude 12.7900970 S 132.1780710 E
Sample Provider
Name Hajnalka Daligault
E-mail hajkis@lanl.gov
Institution Los Alamos National Laboratory
Date Collected unknown

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bpseudomallei 846
ndh
1
lepA
4
narK
2
gmhD
3
gltB
1
lipA
42
ace
1
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs 2
Contig N50 3968047
Assembly Level Chromosome with gaps
Percent GC
Cross-References
NCBI BioSample Accession SAMN02951657
NCBI Taxonomy ID 1435372
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 6295
CDS 6136
pseudo 86
tRNA 60
rRNA 12
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2547
Cytoplasmic Membrane 1237
Periplasmic 199
Outer Membrane 143
Extracellular 101
Unknown 1766
Unknown (This protein may have multiple localization sites) 174
Flagellar 33
Fimbrial 7
T3SS 4

Replicons

Name Length GC
Burkholderia pseudomallei MSHR3965 chromosome 1. 3968347 bp 68.0%
Replicon details
Burkholderia pseudomallei MSHR3965 chromosome 2, complete sequence. 3312394 bp 68.1%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF