Strain Overview | |
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Organism Name | Burkholderia pseudomallei MSHR1153 |
Species | Burkholderia pseudomallei |
Strain | MSHR1153 |
Description/Title | Microbe sample from Burkholderia pseudomallei MSHR1153 |
Annotated Genes | 6243 |
Partial Genes | 79 |
Host Information | |
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Host Species Taxonomic Name | Homo sapiens |
Host Species Common Name | human |
Host Species Taxonomy ID | 9606 |
Geographic Location | |
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Location Name | Australia |
Isolation Source | clinical isolate |
Sample Provider | |
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Name | Hajnalka Daligault |
hajkis@lanl.gov | |
Institution | Los Alamos National Laboratory |
Date Collected | unknown |
Database | Scheme | Sequence Type | Alleles | |||||||
---|---|---|---|---|---|---|---|---|---|---|
PubMLST | bpseudomallei | 117 |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | 2 |
Contig N50 | 4032226 |
Assembly Level | Chromosome with gaps |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN03008919 |
NCBI Taxonomy ID | 1437000 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Feature | Count |
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gene | 6243 |
CDS | 6072 |
pseudo | 98 |
tRNA | 60 |
rRNA | 12 |
ncRNA | 1 |
Localization | Count |
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Cytoplasmic | 2519 |
Cytoplasmic Membrane | 1224 |
Periplasmic | 200 |
Outer Membrane | 136 |
Extracellular | 102 |
Unknown | 1747 |
Unknown (This protein may have multiple localization sites) | 183 |
Flagellar | 33 |
Fimbrial | 7 |
T3SS | 5 |
Name | Length | GC | |
---|---|---|---|
Burkholderia pseudomallei MSHR1153 chromosome 1, complete sequence. | 4032226 bp | 67.9% |
Replicon details
|
Burkholderia pseudomallei MSHR1153 chromosome 2. | 3280677 bp | 68.2% |
Replicon details
|
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |