Burkholderia mallei strain_11

Strain Overview
Organism Name Burkholderia mallei strain_11
Species Burkholderia mallei
Strain strain_11
Description/Title Pathogen sample from Burkholderia mallei
Annotated Genes 4800
Partial Genes 146
Host Information
Host Species Taxonomic Name
Host Species Common Name Homo sapiens
Geographic Location
Location Name Turkey
Isolation Source unknown
Latitude/Longitude unknown
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Translational Genomics Research Institute
Date Collected 1949

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs 188
Contig N50 60483
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN02303035
NCBI Taxonomy ID 1382521
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 4800
CDS 4744
pseudo 227
tRNA 51
rRNA 4
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2054
Cytoplasmic Membrane 975
Periplasmic 161
Outer Membrane 105
Extracellular 75
Unknown 1313
Unknown (This protein may have multiple localization sites) 142
Flagellar 23
Fimbrial 3
Host Associated 2
T3SS 3

Replicons

188 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF