Strain Overview | |
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Organism Name | Burkholderia mallei strain_11 |
Species | Burkholderia mallei |
Strain | strain_11 |
Description/Title | Pathogen sample from Burkholderia mallei |
Annotated Genes | 4800 |
Partial Genes | 146 |
Host Information | |
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Host Species Taxonomic Name | |
Host Species Common Name | Homo sapiens |
Geographic Location | |
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Location Name | Turkey |
Isolation Source | unknown |
Latitude/Longitude | unknown |
Sample Provider | |
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Name | Jason Sahl |
jasonsahl@gmail.com | |
Institution | Translational Genomics Research Institute |
Date Collected | 1949 |
Database | Scheme | Sequence Type | Alleles | |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | 188 |
Contig N50 | 60483 |
Assembly Level | Contig |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN02303035 |
NCBI Taxonomy ID | 1382521 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Feature | Count |
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gene | 4800 |
CDS | 4744 |
pseudo | 227 |
tRNA | 51 |
rRNA | 4 |
ncRNA | 1 |
Localization | Count |
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Cytoplasmic | 2054 |
Cytoplasmic Membrane | 975 |
Periplasmic | 161 |
Outer Membrane | 105 |
Extracellular | 75 |
Unknown | 1313 |
Unknown (This protein may have multiple localization sites) | 142 |
Flagellar | 23 |
Fimbrial | 3 |
Host Associated | 2 |
T3SS | 3 |
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |