| Strain Overview | |
|---|---|
| Organism Name | Burkholderia dolosa PC543 |
| Species | Burkholderia dolosa |
| Strain | PC543 |
| Description/Title | Sample from Burkholderia dolosa PC543 |
| Annotated Genes | 5620 |
| Partial Genes | 254 |
| Host Information | |
|---|---|
| Host Species Taxonomic Name | Homo sapiens |
| Host Species Common Name | human |
| Host Species Taxonomy ID | 9606 |
| Host Species Disease | cystic fibrosis |
| Geographic Location | |
|---|---|
| Location Name | USA |
| Isolation Source | airway |
| Database | Scheme | Sequence Type | Alleles | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| PubMLST | bcc | 472 |
|
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| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||||||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | 64 |
| Contig N50 | 196616 |
| Assembly Level | Chromosome |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN02470544 |
| NCBI Taxonomy ID | 1385930 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 5620 |
| CDS | 5461 |
| pseudo | 93 |
| tRNA | 61 |
| ncRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2352 |
| Cytoplasmic Membrane | 1159 |
| Periplasmic | 191 |
| Outer Membrane | 134 |
| Extracellular | 88 |
| Unknown | 1389 |
| Unknown (This protein may have multiple localization sites) | 150 |
| Flagellar | 20 |
| Fimbrial | 3 |
| T3SS | 2 |
| Name | Length | GC | |
|---|---|---|---|
| Burkholderia dolosa PC543 chromosome 1, whole genome shotgun sequence. | 3314966 bp | 66.9% |
Replicon details
|
| Burkholderia dolosa PC543 chromosome 2, whole genome shotgun sequence. | 2159136 bp | 67.3% |
Replicon details
|
| Burkholderia dolosa PC543 chromosome 3, whole genome shotgun sequence. | 823866 bp | 67.0% |
Replicon details
|
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |