Burkholderia cepacia LMG 16656

Strain Overview
Organism Name Burkholderia cepacia LMG 16656
Species Burkholderia cepacia
Strain LMG 16656
Description/Title Microbe sample Burkholderia cepacia LMG 16656
Annotated Genes 7257
Partial Genes 74
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name United Kingdom: Edinburgh
Isolation Source sputum from cystic fibrosis patient
Sample Provider
Name Shannon Johnson
E-mail shannonj@lanl.gov
Institution Los Alamos National Laboratory
Date Collected 1989

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 28
recA
14		 gltB
11		 phaC
6		 lepA
11		 gyrB
9		 trpB
12		 atpD
15
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000877315.1
Assembly Status latest
Scaffolds
Contigs 5
Contig N50 4098853
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03144973
NCBI Taxonomy ID 292
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 7257
CDS 7118
tRNA 75
pseudo 38
rRNA 24
ncRNA 2

Subcellular Localization

Localization Count
Cytoplasmic 3107
Cytoplasmic Membrane 1523
Periplasmic 237
Outer Membrane 162
Extracellular 103
Unknown 2034
Unknown (This protein may have multiple localization sites) 201
Flagellar 15
Fimbrial 4
T3SS 1

Replicons

5 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF