| Strain Overview | |
|---|---|
| Organism Name | Burkholderia cepacia DWS 37UF10B-2 |
| Species | Burkholderia cepacia |
| Strain | DWS 37UF10B-2 |
| Description/Title | Microbe sample from Burkholderia cepacia |
| Annotated Genes | 6388 |
| Partial Genes | 123 |
| Host Information | |
|---|---|
| Host Species Taxonomic Name |
| Geographic Location | |
|---|---|
| Location Name | missing |
| Isolation Source | soil |
| Sample Provider | |
|---|---|
| Name | Hajnalka Daligault |
| hajkis@lanl.gov | |
| Institution | Los Alamos National Laboratory |
| Date Collected | missing |
| Database | Scheme | Sequence Type | Alleles | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| PubMLST | bcc | 810 |
|
|||||||
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||||||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | 5 |
| Contigs | 6 |
| Contig N50 | 2068068 |
| Assembly Level | Scaffold |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN02796019 |
| NCBI Taxonomy ID | 292 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 6388 |
| CDS | 6261 |
| pseudo | 59 |
| tRNA | 59 |
| rRNA | 7 |
| ncRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2724 |
| Cytoplasmic Membrane | 1375 |
| Periplasmic | 223 |
| Outer Membrane | 158 |
| Extracellular | 92 |
| Unknown | 1511 |
| Unknown (This protein may have multiple localization sites) | 186 |
| Flagellar | 1 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |