Strain Overview | |
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Organism Name | Burkholderia cepacia RB-39 |
Species | Burkholderia cepacia |
Strain | RB-39 |
Description/Title | Genome sequencing of Burkholderia cepacia strain RB-39 |
Annotated Genes | 7954 |
Partial Genes | 309 |
Host Information | |
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Host Species Taxonomic Name |
Geographic Location | |
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Location Name | Malaysia |
Isolation Source | Soil |
Sample Provider | |
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Name | Robson Ee |
robsonee@live.com | |
Institution | University of Malaya |
Date Collected | 05-Dec-2012 |
Database | Scheme | Sequence Type | Alleles | |||||||
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PubMLST | bcc | 1618 |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | 25 |
Contig N50 | 560408 |
Assembly Level | Contig |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN02892978 |
NCBI Taxonomy ID | 292 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Feature | Count |
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gene | 7954 |
CDS | 7808 |
tRNA | 69 |
pseudo | 58 |
rRNA | 18 |
ncRNA | 1 |
Localization | Count |
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Cytoplasmic | 3427 |
Cytoplasmic Membrane | 1657 |
Periplasmic | 259 |
Outer Membrane | 186 |
Extracellular | 105 |
Unknown | 1961 |
Unknown (This protein may have multiple localization sites) | 218 |
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |