| Strain Overview | |
|---|---|
| Organism Name | Burkholderia cenocepacia DDS 22E-1 |
| Species | Burkholderia cenocepacia |
| Strain | DDS 22E-1 |
| Description/Title | Microbe sample from Burkholderia cenocepacia |
| Annotated Genes | 7045 |
| Partial Genes | 229 |
| Host Information | |
|---|---|
| Host Species Taxonomic Name |
| Geographic Location | |
|---|---|
| Location Name | Australia |
| Isolation Source | aerosol |
| Sample Provider | |
|---|---|
| Name | Hajnalka Daligault |
| hajkis@lanl.gov | |
| Institution | Los Alamos National Laboratory |
| Date Collected | 2005 |
| Database | Scheme | Sequence Type | Alleles | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| PubMLST | bcc | 808 |
|
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| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||||||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | |
| Contig N50 | |
| Assembly Level | Complete Genome |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN02796386 |
| NCBI Taxonomy ID | 95486 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 7045 |
| CDS | 6915 |
| tRNA | 70 |
| pseudo | 41 |
| rRNA | 18 |
| ncRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 3088 |
| Cytoplasmic Membrane | 1511 |
| Periplasmic | 243 |
| Outer Membrane | 188 |
| Extracellular | 79 |
| Unknown | 1619 |
| Unknown (This protein may have multiple localization sites) | 192 |
| Flagellar | 23 |
| Fimbrial | 7 |
| T3SS | 2 |
| Name | Length | GC | |
|---|---|---|---|
| Burkholderia cenocepacia strain DDS 22E-1 chromosome 1, complete sequence. | 3668832 bp | 67.2% |
Replicon details
|
| Burkholderia cenocepacia strain DDS 22E-1 chromosome 2, complete sequence. | 3209624 bp | 66.8% |
Replicon details
|
| Burkholderia cenocepacia strain DDS 22E-1 chromosome 3, complete sequence. | 1166794 bp | 66.7% |
Replicon details
|
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |