Strain Overview | |
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Organism Name | Burkholderia cenocepacia PT15 |
Species | Burkholderia cenocepacia |
Strain | PT15 |
Description/Title | Sample from Burkholderia cenocepacia PT15 |
Annotated Genes | 7179 |
Partial Genes | 782 |
Host Information | |
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Host Species Taxonomic Name |
Geographic Location |
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Sample Provider | |
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Name | |
Institution | Macquarie University, Department of Chemistry and Biomolecular scieces |
Date Collected |
Database | Scheme | Sequence Type | Alleles | |||||||
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PubMLST | bcc | 39 |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | 516 |
Contig N50 | 26568 |
Assembly Level | Contig |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN02769654 |
NCBI Taxonomy ID | 1167689 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Feature | Count |
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gene | 7179 |
CDS | 7048 |
pseudo | 72 |
tRNA | 52 |
rRNA | 6 |
ncRNA | 1 |
Localization | Count |
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Cytoplasmic | 3009 |
Cytoplasmic Membrane | 1555 |
Periplasmic | 241 |
Outer Membrane | 172 |
Extracellular | 89 |
Unknown | 1831 |
Unknown (This protein may have multiple localization sites) | 203 |
Flagellar | 12 |
Fimbrial | 1 |
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |