| Strain Overview | |
|---|---|
| Organism Name | Burkholderia cenocepacia BC7 |
| Species | Burkholderia cenocepacia |
| Strain | BC7 |
| Description/Title | Generic sample from Burkholderia cenocepacia BC7 |
| Annotated Genes | 7376 |
| Partial Genes | 497 |
| Host Information | |
|---|---|
| Host Species Taxonomic Name |
| Geographic Location |
|---|
| Sample Provider | |
|---|---|
| Name | |
| Institution | J. Craig Venter Institute |
| Date Collected |
| Database | Scheme | Sequence Type | Alleles | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| PubMLST | bcc | 28 |
|
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| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||||||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | 295 |
| Contig N50 | 57358 |
| Assembly Level | Contig |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN00255225 |
| NCBI Taxonomy ID | 985077 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 7376 |
| CDS | 7200 |
| pseudo | 79 |
| tRNA | 69 |
| rRNA | 22 |
| ncRNA | 6 |
| Localization | Count |
|---|---|
| Cytoplasmic | 3115 |
| Cytoplasmic Membrane | 1538 |
| Periplasmic | 240 |
| Outer Membrane | 160 |
| Extracellular | 106 |
| Unknown | 2075 |
| Unknown (This protein may have multiple localization sites) | 192 |
| Flagellar | 15 |
| Fimbrial | 4 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |