Strain Overview | |
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Organism Name | Burkholderia ambifaria MEX-5 |
Species | Burkholderia ambifaria |
Strain | MEX-5 |
Description/Title | Generic sample from Burkholderia ambifaria MEX-5 |
Annotated Genes | 7228 |
Partial Genes | 1020 |
Host Information | |
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Host Species Taxonomic Name |
Geographic Location |
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Sample Provider | |
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Name | |
Institution | Joint Genome Institute, U.S. Department of Energy |
Date Collected |
Database | Scheme | Sequence Type | Alleles | |||||||
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PubMLST | bcc | 743 |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | 706 |
Contig N50 | 20649 |
Assembly Level | Contig |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN00000044 |
NCBI Taxonomy ID | 396597 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Feature | Count |
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gene | 7228 |
CDS | 6976 |
pseudo | 193 |
tRNA | 52 |
rRNA | 5 |
ncRNA | 2 |
Localization | Count |
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Cytoplasmic | 2913 |
Cytoplasmic Membrane | 1436 |
Periplasmic | 229 |
Outer Membrane | 160 |
Extracellular | 95 |
Unknown | 1973 |
Unknown (This protein may have multiple localization sites) | 179 |
Flagellar | 4 |
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |