Burkholderia ambifaria MEX-5

Strain Overview
Organism Name Burkholderia ambifaria MEX-5
Species Burkholderia ambifaria
Strain MEX-5
Description/Title Generic sample from Burkholderia ambifaria MEX-5
Annotated Genes 7228
Partial Genes 1020
Host Information
Host Species Taxonomic Name
Geographic Location
Sample Provider
Name
E-mail
Institution Joint Genome Institute, U.S. Department of Energy
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 743
phaC
284
lepA
378
atpD
311
trpB
367
recA
331
gyrB
538
gltB
357
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs 706
Contig N50 20649
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN00000044
NCBI Taxonomy ID 396597
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 7228
CDS 6976
pseudo 193
tRNA 52
rRNA 5
ncRNA 2

Subcellular Localization

Localization Count
Cytoplasmic 2913
Cytoplasmic Membrane 1436
Periplasmic 229
Outer Membrane 160
Extracellular 95
Unknown 1973
Unknown (This protein may have multiple localization sites) 179
Flagellar 4

Replicons

706 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF