| Strain Overview | |
|---|---|
| Organism Name | Burkholderia cepacia GG4 |
| Species | Burkholderia cepacia |
| Strain | GG4 |
| Description/Title | Sample from Burkholderia cepacia GG4 |
| Annotated Genes | 5829 |
| Partial Genes |
| Host Information | |
|---|---|
| Host Species Taxonomic Name | Zingiber officinale |
| Host Species Common Name | ginger |
| Host Species Taxonomy ID | 94328 |
| Geographic Location | |
|---|---|
| Location Name | Malaysia |
| Isolation Source | ginger rhizosphere |
| Environmental Material (?) | soil |
| Sample Provider | |
|---|---|
| Name | |
| johnston@ncbi.nlm.nih.gov | |
| Institution | NCBI |
| Date Collected |
| Database | Scheme | Sequence Type | Alleles | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| PubMLST | bcc | - |
|
|||||||
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||||||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | |
| Contig N50 | |
| Assembly Level | Complete Genome |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN02604072 |
| NCBI Taxonomy ID | 1009846 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Genome Browsers* | |
|---|---|
| Burkholderia cepacia GG4 chromosome 1, complete sequence. | |
| Burkholderia cepacia GG4 chromosome 2, complete sequence. |
| Feature | Count |
|---|---|
| gene | 5903 |
| CDS | 5816 |
| tRNA | 58 |
| pseudo | 14 |
| rRNA | 8 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2543 |
| Cytoplasmic Membrane | 1252 |
| Periplasmic | 215 |
| Outer Membrane | 124 |
| Extracellular | 58 |
| Unknown | 1465 |
| Unknown (This protein may have multiple localization sites) | 162 |
| Flagellar | 20 |
| Fimbrial | 6 |
| Feature | Count |
|---|---|
| General function prediction only | 598 |
| Amino acid transport and metabolism | 577 |
| Transcription | 563 |
| Function unknown | 449 |
| Energy production and conversion | 372 |
| Cell wall/membrane/envelope biogenesis | 335 |
| Carbohydrate transport and metabolism | 306 |
| Lipid transport and metabolism | 252 |
| Signal transduction mechanisms | 250 |
| Inorganic ion transport and metabolism | 233 |
| Coenzyme transport and metabolism | 195 |
| Secondary metabolites biosynthesis, transport and catabolism | 185 |
| Translation, ribosomal structure and biogenesis | 184 |
| Posttranslational modification, protein turnover, chaperones | 168 |
| Intracellular trafficking, secretion, and vesicular transport | 140 |
| Replication, recombination and repair | 130 |
| Cell motility | 112 |
| Nucleotide transport and metabolism | 95 |
| Defense mechanisms | 60 |
| Cell cycle control, cell division, chromosome partitioning | 38 |
| Chromatin structure and dynamics | 4 |
| Extracellular structures | 1 |
| RNA processing and modification | 1 |
| Name | Length | GC | |
|---|---|---|---|
| Burkholderia cepacia GG4 chromosome 1, complete sequence. | 3463655 bp | 66.9% |
Replicon details
|
| Burkholderia cepacia GG4 chromosome 2, complete sequence. | 3003666 bp | 66.5% |
Replicon details
|
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |