Burkholderia gladioli BSR3

Strain Overview
Organism Name Burkholderia gladioli BSR3
Species Burkholderia gladioli
Strain BSR3
Description/Title Sample from Burkholderia gladioli BSR3
Annotated Genes 7726
Partial Genes
Host Information
Host Species Taxonomic Name Oryza sativa
Host Species Common Name rice
Host Species Taxonomy ID 4530
Geographic Location
Location Name South Korea
Isolation Source diseased rice sheath
Sample Provider
Name
E-mail johnston@ncbi.nlm.nih.gov
Institution NCBI
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000194745.1
Assembly Status latest
Scaffolds
Contigs
Contig N50
Assembly Level Gapless Chromosome
Percent GC
Cross-References
NCBI BioSample Accession SAMN02603164
NCBI Taxonomy ID 999541
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Burkholderia gladioli BSR3 chromosome 1, complete sequence.
Burkholderia gladioli BSR3 chromosome 2, complete sequence.
Burkholderia gladioli BSR3 plasmid bgla_1p, complete sequence.
Burkholderia gladioli BSR3 plasmid bgla_2p, complete sequence.
Burkholderia gladioli BSR3 plasmid bgla_3p, complete sequence.
Burkholderia gladioli BSR3 plasmid bgla_4p, complete sequence.

Annotated Features

Feature Count
gene 7757
CDS 7399
tRNA 68
pseudo 34
rRNA 15

Subcellular Localization

Localization Count
Cytoplasmic 3258
Cytoplasmic Membrane 1523
Periplasmic 206
Outer Membrane 189
Extracellular 108
Unknown 1867
Unknown (This protein may have multiple localization sites) 247
Flagellar 17
Fimbrial 8
Host Associated 1
T3SS 2

Breakdown by COG Category

Feature Count
General function prediction only 796
Transcription 716
Amino acid transport and metabolism 594
Function unknown 472
Carbohydrate transport and metabolism 447
Cell wall/membrane/envelope biogenesis 439
Energy production and conversion 385
Signal transduction mechanisms 324
Lipid transport and metabolism 285
Inorganic ion transport and metabolism 280
Replication, recombination and repair 267
Secondary metabolites biosynthesis, transport and catabolism 228
Coenzyme transport and metabolism 217
Intracellular trafficking, secretion, and vesicular transport 207
Posttranslational modification, protein turnover, chaperones 203
Translation, ribosomal structure and biogenesis 200
Cell motility 148
Nucleotide transport and metabolism 108
Defense mechanisms 71
Cell cycle control, cell division, chromosome partitioning 46
Chromatin structure and dynamics 3
RNA processing and modification 1

Replicons

6 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF