Burkholderia ambifaria MC40-6

Strain Overview
Organism Name Burkholderia ambifaria MC40-6
Species Burkholderia ambifaria
Strain MC40-6
Subspecific Genetic Lineage
Description/Title Sample from Burkholderia ambifaria MC40-6
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Annotated Genes 6760
References
Partial Genes
Cross-References
NCBI BioSample Accession SAMN02598385
NCBI Biosample ID 2598385
NCBI Taxonomy ID 398577
GOLD Accession
NCBI Bioprojects
NCBI Sequencing Assay
NCBI Assembly
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 6886
CDS 6690
tRNA 68
rRNA 18
pseudo 14
ncRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2931
Cytoplasmic Membrane 1431
Periplasmic 223
Outer Membrane 166
Extracellular 107
Unknown 2017
Unknown (This protein may have multiple localization sites) 198
Flagellar 21
Fimbrial 24
Host Associated 1
T3SS 4
S-layer 2

Breakdown by COG Category

Feature Count
General function prediction only 674
Transcription 612
Amino acid transport and metabolism 574
Function unknown 527
Energy production and conversion 400
Carbohydrate transport and metabolism 398
Cell wall/membrane/envelope biogenesis 392
Signal transduction mechanisms 300
Lipid transport and metabolism 256
Inorganic ion transport and metabolism 247
Coenzyme transport and metabolism 210
Intracellular trafficking, secretion, and vesicular transport 198
Secondary metabolites biosynthesis, transport and catabolism 198
Translation, ribosomal structure and biogenesis 196
Posttranslational modification, protein turnover, chaperones 190
Replication, recombination and repair 167
Cell motility 139
Nucleotide transport and metabolism 94
Defense mechanisms 59
Cell cycle control, cell division, chromosome partitioning 40
Chromatin structure and dynamics 3
RNA processing and modification 1
Extracellular structures 1
Sample Provider
Name
E-mail
Institution
Date Collected
Geographic Location
Host Information
Host Species Taxonomic Name

Replicons

Name Length GC
Burkholderia ambifaria MC40-6 chromosome 1, complete sequence. 3443583 bp 66.9%
Replicon details
Burkholderia ambifaria MC40-6 chromosome 2, complete sequence. 2769414 bp 66.5%
Replicon details
Burkholderia ambifaria MC40-6 chromosome 3, complete sequence. 1127947 bp 65.9%
Replicon details
Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence. 301592 bp 61.2%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

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TAB CSV GBK EMBL GFF3 GFF3 + sequence GTF Orthologs

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File also contains gene annotations

GTF