Burkholderia vietnamiensis G4

Strain Overview
Organism Name Burkholderia vietnamiensis G4
Species Burkholderia vietnamiensis
Strain G4
Description/Title Sample from Burkholderia vietnamiensis G4
Annotated Genes 7639
Partial Genes
Host Information
Host Species Taxonomic Name
Geographic Location
Location Name USA: Florida
Environmental Feature (?) holding pond
Environmental Material (?) water
Sample Provider
Name P.H.Pritchard
E-mail
Institution U.S. Environmental Protection Agency
Date Collected 1986

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 60
lepA
12		 atpD
27		 gyrB
16		 recA
48		 phaC
11		 trpB
17		 gltB
20
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000016205.1
Assembly Status latest
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMN02598263
NCBI Taxonomy ID 269482
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Burkholderia vietnamiensis G4 chromosome 1, complete sequence.
Burkholderia vietnamiensis G4 chromosome 2, complete sequence.
Burkholderia vietnamiensis G4 chromosome 3, complete sequence.
Burkholderia vietnamiensis G4 plasmid pBVIE01, complete sequence.
Burkholderia vietnamiensis G4 plasmid pBVIE02, complete sequence.
Burkholderia vietnamiensis G4 plasmid pBVIE03, complete sequence.
Burkholderia vietnamiensis G4 plasmid pBVIE04, complete sequence.
Burkholderia vietnamiensis G4 plasmid pBVIE05, complete sequence.

Annotated Features

Feature Count
gene 7861
CDS 7605
tRNA 67
pseudo 25
rRNA 18
ncRNA 2
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 3281
Cytoplasmic Membrane 1434
Periplasmic 213
Outer Membrane 130
Extracellular 107
Unknown 2610
Unknown (This protein may have multiple localization sites) 195
Flagellar 24
Fimbrial 13
Host Associated 1
T3SS 2

Replicons

8 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF Orthologs