Strain Overview | |
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Organism Name | Burkholderia thailandensis E264 ATCC 700388 |
Species | Burkholderia thailandensis |
Strain | E264 ATCC 700388 |
Description/Title | Sample from Burkholderia thailandensis E264 |
Annotated Genes | 5712 |
Partial Genes |
Host Information | |
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Host Species Taxonomic Name |
Geographic Location |
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Sample Provider | |
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Name | |
johnston@ncbi.nlm.nih.gov | |
Institution | NCBI |
Date Collected |
Database | Scheme | Sequence Type | Alleles | |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | |
Contig N50 | |
Assembly Level | Complete Genome |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN02604021 |
NCBI Taxonomy ID | 271848 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Genome Browsers* | |
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Burkholderia thailandensis E264 chromosome I, complete sequence. | |
Burkholderia thailandensis E264 chromosome II, complete sequence. |
Feature | Count |
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gene | 5713 |
CDS | 5633 |
tRNA | 58 |
rRNA | 12 |
pseudo | 8 |
ncRNA | 2 |
Localization | Count |
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Cytoplasmic | 2494 |
Cytoplasmic Membrane | 1153 |
Periplasmic | 179 |
Outer Membrane | 130 |
Extracellular | 104 |
Unknown | 1650 |
Unknown (This protein may have multiple localization sites) | 155 |
Flagellar | 38 |
Fimbrial | 6 |
Host Associated | 4 |
T3SS | 4 |
Feature | Count |
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General function prediction only | 506 |
Function unknown | 454 |
Amino acid transport and metabolism | 448 |
Transcription | 431 |
Cell wall/membrane/envelope biogenesis | 328 |
Energy production and conversion | 314 |
Carbohydrate transport and metabolism | 296 |
Signal transduction mechanisms | 239 |
Replication, recombination and repair | 230 |
Inorganic ion transport and metabolism | 225 |
Lipid transport and metabolism | 223 |
Coenzyme transport and metabolism | 199 |
Secondary metabolites biosynthesis, transport and catabolism | 190 |
Translation, ribosomal structure and biogenesis | 179 |
Posttranslational modification, protein turnover, chaperones | 172 |
Intracellular trafficking, secretion, and vesicular transport | 169 |
Cell motility | 153 |
Nucleotide transport and metabolism | 92 |
Defense mechanisms | 66 |
Cell cycle control, cell division, chromosome partitioning | 34 |
Chromatin structure and dynamics | 4 |
Extracellular structures | 3 |
RNA processing and modification | 1 |
Name | Length | GC | |
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Burkholderia thailandensis E264 chromosome I, complete sequence. | 3809201 bp | 67.3% |
Replicon details
|
Burkholderia thailandensis E264 chromosome II, complete sequence. | 2914771 bp | 68.1% |
Replicon details
|
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |