Burkholderia ambifaria AMMD

Strain Overview
Organism Name Burkholderia ambifaria AMMD - Assembly GCF_000203915.1
Species Burkholderia ambifaria
Strain AMMD
Subspecific Genetic Lineage
Description/Title Sample from Burkholderia ambifaria AMMD
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Annotated Genes 6530
References
Partial Genes 34
Cross-References
NCBI BioSample Accession SAMN02598309
NCBI Biosample ID 2598309
NCBI Taxonomy ID 339670
GOLD Accession
NCBI Bioprojects
NCBI Sequencing Assay
NCBI Assembly
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 6530
CDS 6439
tRNA 69
pseudo 53
rRNA 18
misc_RNA 2
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2885
Cytoplasmic Membrane 1380
Periplasmic 223
Outer Membrane 154
Extracellular 88
Unknown 1540
Unknown (This protein may have multiple localization sites) 200
Flagellar 19
Fimbrial 8
T3SS 4

Breakdown by COG Category

Feature Count
General function prediction only 682
Transcription 629
Amino acid transport and metabolism 593
Function unknown 490
Energy production and conversion 407
Carbohydrate transport and metabolism 405
Cell wall/membrane/envelope biogenesis 376
Signal transduction mechanisms 284
Lipid transport and metabolism 264
Inorganic ion transport and metabolism 251
Secondary metabolites biosynthesis, transport and catabolism 217
Coenzyme transport and metabolism 208
Translation, ribosomal structure and biogenesis 199
Intracellular trafficking, secretion, and vesicular transport 196
Posttranslational modification, protein turnover, chaperones 194
Replication, recombination and repair 168
Cell motility 125
Nucleotide transport and metabolism 91
Defense mechanisms 60
Cell cycle control, cell division, chromosome partitioning 40
Chromatin structure and dynamics 4
RNA processing and modification 1
Extracellular structures 1
Sample Provider
Name
E-mail johnston@ncbi.nlm.nih.gov
Institution
Date Collected
Geographic Location
Host Information
Host Species Taxonomic Name

Replicons

Name Length GC
Burkholderia ambifaria AMMD chromosome 1, complete sequence. 3556545 bp 66.9%
Replicon details
Burkholderia ambifaria AMMD chromosome 2, complete sequence. 2646969 bp 66.8%
Replicon details
Burkholderia ambifaria AMMD chromosome 3, complete sequence. 1281472 bp 66.5%
Replicon details
Burkholderia cepacia AMMD plasmid 1, complete sequence. 43581 bp 65.8%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

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TAB CSV GBK EMBL GFF3 GFF3 + sequence GTF Orthologs

Download Intergenic Region Annotations

File also contains gene annotations

GTF