contact us | site map | view my clipboard |

Add this annotation to your clipboard
               Bxe_A0007               
Key to diagram


View in GBrowse: (?) 19 putative orthologs Acknowledgements for this annotation
Gene Information
Strain Burkholderia xenovorans LB400 (Tax ID: 266265) Replicon Chromosome1(4609 genes, 4895836 bp) [ RefSeq ]
Gene name   Alternate Gene Names  
Locus tag Bxe_A0007 (View 1 update) GenBank Identifier (GI) 91785766 (Precomputed BLAST results at BLINK )
Genomic location 4838896 - 4840398 (+) Feature type CDS 
Burkholderia Ortholog Group Explanation of Orthologous Groups
Product Information
Product Name Periplasmic Sensor Signal Transduction Histidine Kinase
Alternate Product Names
Subcellular localization
Alternate Annotations and Cross-References
RefSeq YP_560972.1
GI 91785766
Entrez 4006420
GBrowse Click here for a GBrowse View of this and other annotations.
COG Predictions
COG PredictionExplanation of COG predictions
COG Accession Description Category
COG0642 BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]. Signal transduction mechanisms
TIGRFAM Prediction
TIGRFAM predictionExplanation of TIGRFAM predictions
Accession Name Function Significance Role Sub Role
TIGR01386 cztS_silS_copS heavy metal sensor kinase 5.8e-16 No Data No Data
Homology
BLINK Precomputed BLAST results at BLINK
Structure Features
PFAM predictions Explanation of PFAM predictions
Accession Domain Start Stop E-value Release No.
PF08521 2CSK_N, Two-component sensor kinase N-terminal. 20 161 2e-28 23.0
PF00512 HisKA, His Kinase A (phosphoacceptor) domain. 238 302 1e-08 23.0
PF02518 HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. 353 472 5e-24 23.0
 
Sequence data
Upstream 500 BP Region TGATGCGCCGCAGCGGTCCGCACGGCGACATGCCGCGTCCTGAAGTGTCGCTGGGCGGTGTGCGCCTGTCCGGCGTCGATCGCCGCATTTTCAACGACGA CAAGCCGCTCGAACTCTCGCCGCGTGAATTCGCGGTGCTCGAAATGCTGCTGCTGCGTCATGGCCGCGTGGTCAGCAAGGCGCAACTGCAAGACCATCTG ACGCATTTCGGCGGCGATCTCGGCGACACCGCGATCGAAGTCTACGTGCACCGGGTCCGTAAAAAACTGGAAAGCTGCCGTGTCGAGATCGTCACGGTGC GTGGCTTCGGTTATCTGTTGCAGGAAATCCGCCAGGCCGCATAATCGTCATGAAGGCCGCGAATCCCATCGCGGCCTGACGGCGCCGGGCCGGCGCCGCG CACTCGTTGCGCAAGTCGCCGGCATCCGGCGAAACTTTGTGGTGCTTGCGCCGTCGTCCTGCGGTGCTCGCGCCGCTGCCTTTTTCCCGCGCGTTCGATC

BLAST search against this genome or other genomes in database
Need more than 500 BP? Try our sequence retrieval tool or view intergenic regions in GBrowse.

DNA Sequence ATGCCCCAGCTGGCCGCCAATAGTCTGCGCCGCACGCTGCTGCGGCGCCTCGCCGCTCCCCTTTCGCTGCTCGCGCTGATGAGCGGCCTGATCGCTTACT GGCTGGCGTGGCAGTACACGCAGCACGTGGTCGACCGTTCGCTCGCCGATCTCGCCACCGCGATCTCCAAACAGATCCAGATTGCCGGCCCGAACGCCAA AGTCACCGTGCCGCCGCTCGCGCAAGCCATGTTCTCGGACCCGGTGGAGCACCTCGTCTACCGGATCAGCAATGGCGAAACCGAAATTGCCGGCGATCAC AATCTTCCGCTGCAAGGCACGAGCGTGCGGCGCATGCATTACGCGTACGTCTTCGAAACGCAGCATCAGGGCGTGACGGTGCGCGTGGCGCAGGTGCGGG TCGATCAGCCGACCGGCAATCCGATCGTCGTCGAAGTTGGCCAGCCGGTGCACCACCGGTTTCGTATCGCCGCCGAATTTCTGGTCGCGATCATGATGCC GTTGCTGTTGCTGCTGCTGGCGGGTTGGGTGATCGTGTGGCGCGTGGTCAATCAGCAGCTCAATCCGCTGACCGATCTCGCGGACTCGCTGAACCGGCAA ACCCACACGTCGCTCGAACCGGTCGATGAAACCTACGTACCGGTTGAAATCCGGCCGCTGACCGGCGCGCTGAACGCGCTGCTCGGACGTCTGAAAACGG CGCTCGACGGCCAGCGCAAATTTATCGCCGACGCCGCGCACCAGCTGCGCACCCCGCTCACCGCTGTCAAGCTGCATGCGGAACAGGCGGCCGTCGCGCG CGACCCGCAACAGACGCTGGCCGCGGTGCGTGAGCTACGCGCCGCAGCCGACCGCGCCGTGCGGCTGTCGAATCAACTGCTTTCGCTCGCGCGCGCCGAG CCGGGTGAACAGGCGGCCCGCTTCGTCAACGTCGACATGGCCGCGCTCGCGTTCGACACCGGCGCGGAATGGGTGCCGCGTGCGTTGACGTTCCACGTCG ACCTCGGTTTCCAGCGTCTGGACGACCCGAGCAACGGCCATCCTTTGATGGCGCGCGGCAATCCCGTGCTGCTGCACGAAGTGATCGCCAATCTGCTGGA TAACGCGCTCAAGTATGTGCCGCCGTCGCGCTTCGATGGTGGCCGCATTACGGTGACAGTGTCGCAAACGGTGATCGACGAGCTGCGCATGGCGGAGATC GTCGTTGAAGACAACGGGCCGGGCGTGCCGCGCAATCAGCAAGCCGATCTCTTCAAACGGTTTTTCCGCGGCGACGGCCAGACGGATGCGGGCGTGGATA GCGGCGCCGGTCTCGGCCTCGCTATCGTTCACGACATCATGGTGCTGCATCACGGCAGCGTGCATTACGAAGACGCACCGGAAGGCGGCGCACGTTTCAT CGTGCGTATTCCGCTCGTATCGGTCAGTGTGCTGAGCGAGGTGGAAGCCGAACCACGCCGGCCGGTAAAAAAATCGGCGCACTCGGCGCCGATGGATATC TGA

BLAST search against this genome or other genomes in database


Downstream 500 BP region Click here to view the nucleotide sequence of the region 500 BP downstream of this gene.

Protein Sequence MPQLAANSLRRTLLRRLAAPLSLLALMSGLIAYWLAWQYTQHVVDRSLADLATAISKQIQIAGPNAKVTVPPLAQAMFSDPVEHLVYRISNGETEIAGDH NLPLQGTSVRRMHYAYVFETQHQGVTVRVAQVRVDQPTGNPIVVEVGQPVHHRFRIAAEFLVAIMMPLLLLLLAGWVIVWRVVNQQLNPLTDLADSLNRQ THTSLEPVDETYVPVEIRPLTGALNALLGRLKTALDGQRKFIADAAHQLRTPLTAVKLHAEQAAVARDPQQTLAAVRELRAAADRAVRLSNQLLSLARAE PGEQAARFVNVDMAALAFDTGAEWVPRALTFHVDLGFQRLDDPSNGHPLMARGNPVLLHEVIANLLDNALKYVPPSRFDGGRITVTVSQTVIDELRMAEI VVEDNGPGVPRNQQADLFKRFFRGDGQTDAGVDSGAGLGLAIVHDIMVLHHGSVHYEDAPEGGARFIVRIPLVSVSVLSEVEAEPRRPVKKSAHSAPMDI

BLAST search against this genome or other genomes in database
View precomputed BLAST results against all genomes at NCBI BLINK
References
PubMed  
We thank Cystic Fibrosis Foundation Therapeutics, Inc. for critical funding support for the Burkholderia Genome Database.



| What's New | Cystic Fibrosis | Burkholderia cenocepacia complex | Overview of Database | Who is involved? | Links to More Analyses | Site Map | Acknowledgements | Contact Us

Burkholderia Genome Database Version 1.0