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               Bcen_0007               
Key to diagram


View in GBrowse: (?) 19 putative orthologs Acknowledgements for this annotation
Gene Information
Strain Burkholderia cenocepacia AU 1054 (Tax ID: 331271) Replicon Chromosome1(3054 genes, 3294563 bp) [ RefSeq ]
Gene name   Alternate Gene Names  
Locus tag Bcen_0007 (View 1 update) GenBank Identifier (GI) 107021569 (Precomputed BLAST results at BLINK )
Genomic location 7982 - 7488 (-) Feature type CDS 
Burkholderia Ortholog Group Explanation of Orthologous Groups
Product Information
Product Name Lytic transglycosylase, catalytic
Alternate Product Names
Subcellular localization
Periplasmic (Class 3Explanation of Localization Confidence)
Alternate Annotations and Cross-References
RefSeq YP_619896.1
GI 107021569
Entrez 4091877
GBrowse Click here for a GBrowse View of this and other annotations.
COG Predictions
COG PredictionExplanation of COG predictions
COG Accession Description Category
COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) [Cell envelope biogenesis, outer membrane]. Cell envelope biogenesis, outer membrane
Homology
BLINK Precomputed BLAST results at BLINK
Structure Features
PFAM predictions Explanation of PFAM predictions
Accession Domain Start Stop E-value Release No.
PF01464 SLT, Transglycosylase SLT domain. 25 138 6e-17 23.0
PF00062 Lys, C-type lysozyme/alpha-lactalbumin family. 44 73 9e-05 23.0
 
Comments
Comments PFAM: Lytic transglycosylase, catalytic
PFAM: Lytic transglycosylase, catalytic; KEGG: bur:Bcep18194_A3245 lytic transglycosylase
Sequence data
Upstream 500 BP Region TTTCGCGACCTGGTCGATATCCGCATTCACGAAATTGAGCGTGACCTGAGCGTAGGCGGCCTGCGAGACGATGATGCCTGCCACGAGCAGGGTCGTGGCG ATACGCCGCATAACGAAGCGATTTCTTGTCATGGATGAATGGGTCGATGCCGGCTCAGGCCACTTCCGGCGGTAGTGCTGGGATCCAAGTCCGAAAGAGG CGACATTAGCAGTTTTTCATGTCCGAAATATCACATTGATCCGAAGACTGTCTCACATACGACAGGTATCCGACGAATCGTATGCAAGATGTAAGGATAG GTGTAACCCTCCGCACGCCGGCCCTCTCCCTGGTTTTCGCGATGAACCGACACGGAAATGCGGTATAACCGGGCTGCCGTATTCCTGCCTGTCGCAATCT GACGGTCTGCCGGTATGATACGGGCGGCGCGTTTCTCGTCGCACTAATAACAGGCACGGGTTTTCCCGAGCTTCGCGCAATTTCCTTTCGTTTCCGCACG

BLAST search against this genome or other genomes in database
Need more than 500 BP? Try our sequence retrieval tool or view intergenic regions in GBrowse.

DNA Sequence ATGAACAGACGGTTCGCTTCGATCGCGTTGATCGCCGCCGGCGCGTGGTTCGCCAGCGGCAACGCACGCGCCGACTGTTTCGACGAAGCGGCCAAATATC AGCAGGTCAATCCGCTGATCCTGCGCGCGATCGCGTGGCAGGAATCGCGCAACCGGCCCGAGGCGCTGAACAAGAACACGAACGGCTCGGTCGACTACGG CCTGATGCAGATCAATTCGATTCACCTGCCGACGCTGTCGCGCTACGGGATCGGCCGCGACACGCTGATGGAACCGTGCAAGAACGTGTACATCGCCGCG TGGCATCTCAAGCAGAAGATGAACCGCTACGGCAACACGTGGCAGGCGGTCGGCGCCTATCATTCGGAAACGCCGTCGCTGCGCGACAAGTACGCGCGGC AGATCGCCGGCATCCTGACGCAATGGAAGCTGCTGCCGCCCGCGCAGACCACTCAGGCCGCCCAGGCCGCTCAAGCGCCTCAAGCCGCTCAGTGA

BLAST search against this genome or other genomes in database


Downstream 500 BP region Click here to view the nucleotide sequence of the region 500 BP downstream of this gene.

Protein Sequence MNRRFASIALIAAGAWFASGNARADCFDEAAKYQQVNPLILRAIAWQESRNRPEALNKNTNGSVDYGLMQINSIHLPTLSRYGIGRDTLMEPCKNVYIAA WHLKQKMNRYGNTWQAVGAYHSETPSLRDKYARQIAGILTQWKLLPPAQTTQAAQAAQAPQAAQ

BLAST search against this genome or other genomes in database
View precomputed BLAST results against all genomes at NCBI BLINK
Operons/Regulons
Type operon
Genes
GeneProduct
Bcen_0006 cobalamin synthesis protein, P47K
Bcen_0007 Lytic transglycosylase, catalytic
Evidence Computationally Predicted
PubMed 18988623
Cross-Reference DOOR 213915
References
PubMed  
We thank Cystic Fibrosis Foundation Therapeutics, Inc. for critical funding support for the Burkholderia Genome Database.



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Burkholderia Genome Database Version 1.0