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               BURPS1710B_0007               
Key to diagram


View in GBrowse: (?) 20 putative orthologs Acknowledgements for this annotation
Gene Information
Strain Burkholderia pseudomallei 1710b (Tax ID: 320372) Replicon Chromosome_I(3799 genes, 4126292 bp) [ RefSeq ]
Gene name paaA  Alternate Gene Names  
Locus tag BURPS1710B_0007 (View 1 update) GenBank Identifier (GI) 76810093 (Precomputed BLAST results at BLINK )
Genomic location 8346 - 9344 (+) Feature type CDS 
Burkholderia Ortholog Group Explanation of Orthologous Groups
Product Information
Product Name phenylacetate-CoA oxygenase subunit PaaA
Alternate Product Names
Subcellular localization
Unknown (Class 3Explanation of Localization Confidence)
Alternate Annotations and Cross-References
RefSeq YP_331425.1
GI 76810093
Entrez 3691242
GBrowse Click here for a GBrowse View of this and other annotations.
Gene Ontology (GO)
GO Accession GO Term Evidence
Molecular Function
Biological Process
GO:0010124 phenylacetate catabolic process IEA
Cellular Component
COG Predictions
COG PredictionExplanation of COG predictions
COG Accession Description Category
COG3396 COG3396, Uncharacterized conserved protein [Function unknown]. Function unknown
TIGRFAM Prediction
TIGRFAM predictionExplanation of TIGRFAM predictions
Accession Name Function Significance Role Sub Role
TIGR02156 PA_CoA_Oxy1 phenylacetate-CoA oxygenase, PaaG subunit 6.4e-236 Energy metabolism Other
Homology
BLINK Precomputed BLAST results at BLINK
Structure Features
PFAM predictions Explanation of PFAM predictions
Accession Domain Start Stop E-value Release No.
PF05138 PaaA_PaaC, Phenylacetic acid catabolic protein. 49 311 3e-79 23.0
 
Comments
Comments with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA
Sequence data
Upstream 500 BP Region AATCCGGACCATCCTTCGCCAGCCTATCGGCGTGGCGACTGATTGCTATCGGCCGGCAATCAGGGATAAACCGGACCGGAGGGCCAGGCTCGCGACTCGA CGGTATAGCGTAAGCGGCTCGATAGCTCGGCGGTTCGGTGGTTCGGCGGTTCGGCGGCTCGGTGGTTCGGCGGTTCGGCGGTTCGGCGGCTCGGCGGCTC GGCGGTTCGGCGGCTCGGCGGCTCGGCGGCTCGGCGGCTCGGCGGCTCGGCGGCTCGGCAGCTCCCAGCTCGTAGTTTGTCGCGCACGATCCGGCAAGCC CCCCGCACCCGGTACTCCCCGACGAAAGCCCACCACCCGTCGCACGGCACGACACAGCGCATGCGCGACACGACCGCCCGTCCGTGGCAAATCGTCGTCG CTCGCACCGCGAACCTTGCCCATCCGCTAAAATGATATATTAACCGACCGGTCGGTTGGTTTATACTGCGTGAACATTCCACCTGGACGAGAACATCGCC

BLAST search against this genome or other genomes in database
Need more than 500 BP? Try our sequence retrieval tool or view intergenic regions in GBrowse.

DNA Sequence ATGTACACGCAATCCCTCGACATCCCCGGCAACATCGCGCCGATCGATGCCGCCGCCGATTCGCCCGAACAGGCAGGATTCGATGCCGCCATCGCCGCCG ACGGCAAGATCGAACCGCAGGACTGGATGCCCGACGCTTACCGCAAGACGCTCGTGCGGCAGATTTCGCAGCACGCGCACTCGGAAGTCGTCGGCATGCT GCCGGAAGGCAACTGGATCACGCGCGCCCCGAGCCTCAAGCGCAAGGCGATCCTGCTCGCGAAGGTCCAGGACGAAGCCGGTCACGGCCTCTATCTATAT AGCGCCGCGGAAACGCTCGGCGTATCGCGCGATGCGCTGATCGACGCGCTGCACGCGGGCAAAGCCAAGTATTCGAGCATCTTCAATTACCCCACCCTCA CGTGGGCGGATGTCGGCGTGATCGGCTGGCTCGTCGACGGCGCGGCGATCATGAACCAGGTTCCGCTCTGCCGCTGCACGTACGGCCCGTATGCGCGCGC GATGATCCGCGTCTGCAAGGAGGAATCGTTCCATCAGCGGCAAGGCTTCGACGCGCTGCTCGCGATGATGAAGGGCACCGACGCGCAGCGCGCGATGGTC CAGGAAGCCGTGGACCGCTGGTGGTGGCCCGTGCTGATGATGTTCGGGCCGCCCGACGCCGATTCCGTGCACAGCAACCAGTCGGCCAAATGGGGGATCA AGCGGATTTCGAACGACGACCTGCGGCAGAAATTCGTCGACGCGACGGTCGAGCAGGCGAAGGTGCTCGGCGTCACGCTGCCCGATCCGGACCTCAAGTG GAACGACGCCCGCGGCCATTTCGATTACGGCGCGCTCGACTGGGACGAATTCTGGCGCGTCGTCAACGGCGACGGCCCGTGCAACAAGGAGCGCCTCGCG ACCCGCGTGAAGGCTCACGAAAACGGCGCGTGGGTTCGCGACGCCGCGCTCGCGCACGAGGAAAAGCGCCGCCGTCGCGCGCAGCAACAAGCGGCCTAA

BLAST search against this genome or other genomes in database


Downstream 500 BP region Click here to view the nucleotide sequence of the region 500 BP downstream of this gene.

Protein Sequence MYTQSLDIPGNIAPIDAAADSPEQAGFDAAIAADGKIEPQDWMPDAYRKTLVRQISQHAHSEVVGMLPEGNWITRAPSLKRKAILLAKVQDEAGHGLYLY SAAETLGVSRDALIDALHAGKAKYSSIFNYPTLTWADVGVIGWLVDGAAIMNQVPLCRCTYGPYARAMIRVCKEESFHQRQGFDALLAMMKGTDAQRAMV QEAVDRWWWPVLMMFGPPDADSVHSNQSAKWGIKRISNDDLRQKFVDATVEQAKVLGVTLPDPDLKWNDARGHFDYGALDWDEFWRVVNGDGPCNKERLA TRVKAHENGAWVRDAALAHEEKRRRRAQQQAA

BLAST search against this genome or other genomes in database
View precomputed BLAST results against all genomes at NCBI BLINK
Operons/Regulons
Type operon
Genes
GeneProduct
paaA phenylacetate-CoA oxygenase subunit PaaA
paaB phenylacetic acid degradation protein PaaB
paaI phenylacetate-CoA oxygenase, PaaI subunit
paaD phenylacetic acid degradation protein PaaD
paaK phenylacetate-CoA oxygenase/reductase, PaaK subunit
Evidence Computationally Predicted
PubMed 18988623
Cross-Reference DOOR 156250
References
PubMed  
We thank Cystic Fibrosis Foundation Therapeutics, Inc. for critical funding support for the Burkholderia Genome Database.



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Burkholderia Genome Database Version 1.0