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               BMASAVP1_0007               
Key to diagram


View in GBrowse: (?) 162 putative orthologs Acknowledgements for this annotation
Gene Information
Strain Burkholderia mallei SAVP1 (Tax ID: 320388) Replicon Chromosome_II(1763 genes, 1734922 bp) [ RefSeq ]
Gene name   Alternate Gene Names  
Locus tag BMASAVP1_0007 (View 1 update) GenBank Identifier (GI) 121597921 (Precomputed BLAST results at BLINK )
Genomic location 7189 - 6926 (-) Feature type CDS 
Burkholderia Ortholog Group Explanation of Orthologous Groups
BG005996 
Possible inparalog involved.
Orthology uncertain because more than one top BLASTp hit was identified.
Product Information
Product Name IS407A, transposase OrfA
Alternate Product Names
Subcellular localization
Unknown (Class 3Explanation of Localization Confidence)
Alternate Annotations and Cross-References
RefSeq YP_989624.1
GI 121597921
Entrez 4676948
GBrowse Click here for a GBrowse View of this and other annotations.
COG Predictions
Homology
BLINK Precomputed BLAST results at BLINK
Structure Features
PFAM predictions Explanation of PFAM predictions
Accession Domain Start Stop E-value Release No.
PF01527 Transposase_8, Transposase. 2 79 1e-14 23.0
 
Comments
Comments identified by match to protein family HMM PF01527
Sequence data
Upstream 500 BP Region GCGTCTTGCCCTGCGCGAACGCGGCGGGGGACAAGGCGAGCGCCGTCAGCGCGGCGGCGGTGACCCAAACGATCGTTGTTTTCGTGTTCATCGCGAGTTC TCCTTCGAGTGGATCCCTGTCGGACGACAGTTGCCTCTACTTTGAACGCCGGGCGGTACGCAACCATGAGCGTGCGATGACAAATCCGTCATCTGCGCGC GGTGCGGCATCGGCCGCGCGCGCGGACGCTTCGATGACGAGAATTTCATGTTCGCGTCAGCGTGGCGCTGCGGCAATGCCGTAGCATCTGCATTCCAAGA TCGCCGATCAGACGAGATTGGACCGAGGTGCTTGGTTCCCCTCGAGCACGCGAGGCGCATTGGCACCAGCAGGTGCTATCGCACTTTGGCCGGACAGCTC CCCCTGTCCGGCCTTTTTTTGCGGCGCGCGCCTGACCTGCCCCCTACAAACAGGGCCAGCCGGAGTCTAGTAAAGTTCGTTTTCGGAGAAGAAGACGAAC

BLAST search against this genome or other genomes in database
Need more than 500 BP? Try our sequence retrieval tool or view intergenic regions in GBrowse.

DNA Sequence ATGAAGAAGCGCTTTACGGAACAGCAAATCATCGGGTTTCTGAAGGAAGCCGAGGCCGGTATGCCGGTCAAGGAACTGTGCAGGAAGCATGGGTTCAGTG ACGCGTCGTTCTACACCTGGCGCGCGAAGTTCGGCGGCATGGAAGTCTCGGAAGCCCGCCGGCTCAAGGGCCTCGAGGTGGAGAATGCCCGACTGAAGAA ACTGCTGGCCGAAGCAATGCTCGATATGGAAGCGTTGAAGGTTGTCGTCAAGGGAAAGCCCTGA

BLAST search against this genome or other genomes in database


Downstream 500 BP region Click here to view the nucleotide sequence of the region 500 BP downstream of this gene.

Protein Sequence MKKRFTEQQIIGFLKEAEAGMPVKELCRKHGFSDASFYTWRAKFGGMEVSEARRLKGLEVENARLKKLLAEAMLDMEALKVVVKGKP

BLAST search against this genome or other genomes in database
View precomputed BLAST results against all genomes at NCBI BLINK
Operons/Regulons
Type operon
Genes
GeneProduct
BMASAVP1_0006 IS407A, transposase OrfB
BMASAVP1_0007 IS407A, transposase OrfA
Evidence Computationally Predicted
PubMed 18988623
Cross-Reference DOOR 285305
References
PubMed  
We thank Cystic Fibrosis Foundation Therapeutics, Inc. for critical funding support for the Burkholderia Genome Database.



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Burkholderia Genome Database Version 1.0