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               BMA10247_0007               
Key to diagram


View in GBrowse: (?) 17 putative orthologs Acknowledgements for this annotation
Gene Information
Strain Burkholderia mallei NCTC 10247 (Tax ID: 320389) Replicon Chromosome_I(3558 genes, 3495687 bp) [ RefSeq ]
Gene name   Alternate Gene Names  
Locus tag BMA10247_0007 (View 1 update) GenBank Identifier (GI) 126449251 (Precomputed BLAST results at BLINK )
Genomic location 8156 - 7791 (-) Feature type CDS 
Burkholderia Ortholog Group Explanation of Orthologous Groups
Product Information
Product Name TonB domain-containing protein
Alternate Product Names
Subcellular localization
Periplasmic (Class 3Explanation of Localization Confidence)
Alternate Annotations and Cross-References
RefSeq YP_001079589.1
GI 126449251
Entrez 4894311
GBrowse Click here for a GBrowse View of this and other annotations.
Gene Ontology (GO)
GO Accession GO Term Evidence
Molecular Function
GO:0015570 energizer of outer membrane receptor-mediated transport activity IEA
Biological Process
GO:0006810 transport IEA
Cellular Component
COG Predictions
COG PredictionExplanation of COG predictions
COG Accession Description Category
COG0810 TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]. Cell envelope biogenesis, outer membrane
TIGRFAM Prediction
TIGRFAM predictionExplanation of TIGRFAM predictions
Accession Name Function Significance Role Sub Role
TIGR01352 tonB_Cterm TonB family C-terminal domain 8e-12 Transport and binding proteins Cations and iron carrying compounds
Homology
BLINK Precomputed BLAST results at BLINK
Structure Features
PFAM predictions Explanation of PFAM predictions  
Comments
Comments identified by match to protein family HMM TIGR01352
Sequence data
Upstream 500 BP Region ACCGGCAACGTCGCCGGCCTGCTGCAATTCTGCGTCAAGAACGACTATCTCGGCGACGGCGGCGCGTCGTCGATCAAGGACGCGCTGATGAGCAAGCTGG GCGCGGGCGTCACGTCGGACAGCACGTATGCGAGCGGCGCGAGCGGGATTCTCGATGCCGGCAACGGCCGCACGCTCGACCTGAGCGGCGGGCAGAGCTT CAAGCAGCAACTGACGAAGCAGGTGTGCGACAAGGTGTTGTCGCAAGCGAAGGCGCTGTTGTAAGCACGGCCGGCGGGCGGCGTGCCGTCGTCGGCGGAA CGGGCGGCGCGGCTCGATGCGCGCGTCGTCGCTGCGACGACGCACGTCGGTGAACGCCGGGACCGCGCAAGGCGCGCCGCGCCGGCGTTCGGCGCGAACC AAACATCGGCGAACAAAACGGGGGGCGGAATCGCATGGCGGCGCGCGACGCGCATGCCGTCGATTCACGCGATGGATGCTGTAGTCGGACCACAACGAAC

BLAST search against this genome or other genomes in database
Need more than 500 BP? Try our sequence retrieval tool or view intergenic regions in GBrowse.

DNA Sequence ATGAAGACCTACTCGACGTACCTGGCGCTTCCTCTTGCCGCGTCGCTGCTTGCAGGCTGCGCGGCGTTCGCGCCGCGCGATGCGGCGAAGCTCGAATGCA CGATGCCGGTCGCGGCGTATCCGGAGAATGCGAAGCCGCTCGAGCGCCGGGCGACTGTGCTCGTGCGCGCGATGATCACGGCGTCGGGCAACGCGGAGAA CGTCACGGTGACGACGAGCAGCCGGAACGCCGCGGCTGACCGCGCAGCCGTCGATGCGATGTCGAGGATCGCGTGCTCGCAGACTCCCGCGCGCGGCGGC GAGCCGTATCCGTTCACGCTGACGCGGCCGTTCGTGTTCGAGCCGCGCGCGAAGGCGCCGCGGTGA

BLAST search against this genome or other genomes in database


Downstream 500 BP region Click here to view the nucleotide sequence of the region 500 BP downstream of this gene.

Protein Sequence MKTYSTYLALPLAASLLAGCAAFAPRDAAKLECTMPVAAYPENAKPLERRATVLVRAMITASGNAENVTVTTSSRNAAADRAAVDAMSRIACSQTPARGG EPYPFTLTRPFVFEPRAKAPR

BLAST search against this genome or other genomes in database
View precomputed BLAST results against all genomes at NCBI BLINK
Operons/Regulons
Type operon
Genes
GeneProduct
BMA10247_0007 TonB domain-containing protein
BMA10247_0008 hypothetical protein
BMA10247_0009 hypothetical protein
Evidence Computationally Predicted
PubMed 18988623
Cross-Reference DOOR 303824
References
PubMed  
We thank Cystic Fibrosis Foundation Therapeutics, Inc. for critical funding support for the Burkholderia Genome Database.



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Burkholderia Genome Database Version 1.0