Burkholderia vietnamiensis G4, Bcep1808_2350 (ecfD)

Gene Feature Overview

Strain	Burkholderia vietnamiensis G4 GCF_000016205.1|latest
Locus Tag	Bcep1808_2350
NCBI Locus Tag	BCEP1808_RS11875
Name	ecfD
Replicon	chromosome 1
Genomic location	2610096 - 2610659 (+ strand)

Cross-References

RefSeq	WP_011885548.1
GI	134296449
Entrez	4954091
GI	134296449
INSDC	ABO55349.1
NCBI Locus Tag	BCEP1808_RS11875
NCBI Old Locus Tag	Bcep1808_2350
RefSeq	WP_011885548.1
UniParc	UPI00003A61E7
UniProtKB Acc	A4JGE6
UniProtKB ID	A4JGE6_BURVG
UniRef100	UniRef100_A4JGE6
UniRef50	UniRef50_Q0KCU5
UniRef90	UniRef90_A0A071M5F0

Product

Feature Type	CDS
Coding Frame	1
Product Name	RNA polymerase factor sigma-70 Product Name Confidence: Class 1
Synonyms	sigma factor 70 EcfD
Evidence for Translation
Charge (pH 7)	-10.85
Kyte-Doolittle Hydrophobicity Value	-0.455
Molecular Weight (kDa)	21126.4
Isoelectric Point (pI)	4.61

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 167 genera

Orthologs/Comparative Genomics

Burkholderia Ortholog Group	BG002152 (654 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: Bcep1808_2350 Search term: ecfD Search term: RNA polymerase factor sigma-70

Human Homologs

References