Burkholderia vietnamiensis G4, Bcep1808_1046 (ecfA1)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Burkholderia vietnamiensis G4
GCF_000016205.1|latest
Locus Tag
Bcep1808_1046
NCBI Locus TagBCEP1808_RS05275
Name
ecfA1
Replicon chromosome 1
Genomic location 1130662 - 1131261 (+ strand)

Cross-References

RefSeq WP_011883961.1
GI 134295157
Entrez 4952752
GI 134295157
INSDC ABO54057.1
NCBI Locus Tag BCEP1808_RS05275
NCBI Old Locus Tag Bcep1808_1046
RefSeq WP_011883961.1
UniParc UPI00003A5F87
UniProtKB Acc A4JCQ4
UniProtKB ID A4JCQ4_BURVG
UniRef100 UniRef100_A4JCQ4
UniRef50 UniRef50_D0ZSY9
UniRef90 UniRef90_Q2SXU1

Product

Feature Type CDS
Coding Frame 1
Product Name
RNA polymerase sigma factor RpoE
Product Name Confidence: Class 1
Synonyms sigma factor 70 EcfA1
Evidence for Translation
Charge (pH 7) -2.79
Kyte-Doolittle Hydrophobicity Value -0.386
Molecular Weight (kDa) 22636.6
Isoelectric Point (pI) 5.21

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 496 genera

Orthologs/Comparative Genomics

Burkholderia Ortholog Group BG000968 (655 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: Bcep1808_1046
Search term: ecfA1

Human Homologs

References

Architecture of Burkholderia cepacia complex sigma70 gene family: evidence of alternative primary and clade-specific factors, and genomic instability.
Menard A, de Los Santos PE, Graindorge A, Cournoyer B
BMC Genomics 2007 Sep 4;8:308
PubMed ID: 17784948