Burkholderia pseudomallei K96243, BPSL3318 (rpsU)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Burkholderia pseudomallei K96243 - Assembly GCF_000011545.1
GCF_000011545.1|latest
Locus Tag
BPSL3318
Name
rpsU
Replicon chromosome 1
Genomic location 3936905 - 3937117 (- strand)

Cross-References

RefSeq YP_109914.1
GI 53720928
Entrez 3094653
GI 53720928
INSDC AAC34679.1
NCBI Locus Tag BPSL3318
RefSeq YP_109914.1,GeneID
UniParc UPI000000324C
UniProtKB Acc P0DML1
UniProtKB ID RS211_BURPS
UniRef100 UniRef100_Q3JY47
UniRef50 UniRef50_Q3JY47
UniRef90 UniRef90_Q3JY47

Product

Feature Type CDS
Coding Frame 1
Product Name
30S ribosomal protein S21
Synonyms
Evidence for Translation
Charge (pH 7) 14.46
Kyte-Doolittle Hydrophobicity Value -0.829
Molecular Weight (kDa) 8362.9
Isoelectric Point (pI) 11.99

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Extracellular Class 1
quantitative mass spectrometry evidence
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 322 genera

Orthologs/Comparative Genomics

Burkholderia Ortholog Group BG000149 (653 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: BPSL3318
Search term: rpsU

Human Homologs

References

Quantitative proteomic analysis of Burkholderia pseudomallei Bsa type III secretion system effectors using hypersecreting mutants.
Vander Broek CW, Chalmers KJ, Stevens MP, Stevens JM
Mol Cell Proteomics 2015 Apr;14(4):905-16
PubMed ID: 25635268