Burkholderia cenocepacia J2315, pBCA025 (traF)

Gene Feature Overview

Strain	Burkholderia cenocepacia J2315 GCF_000009485.1|latest
Locus Tag	pBCA025
NCBI Locus Tag	QU43_RS72660
Name	traF
Replicon	plasmid pBCJ2315
Genomic location	32664 - 33497 (- strand)

Cross-References

RefSeq	WP_006487410.1
GI	206479950
Entrez	6926417
GI	206479950
INSDC	CAR57732.1
NCBI Locus Tag	QU43_RS72660
NCBI Old Locus Tag	pBCA025
RefSeq	WP_006487410.1,GeneID
UniParc	UPI00017BB2DC
UniProtKB Acc	B4EQG1
UniProtKB ID	B4EQG1_BURCJ
UniRef100	UniRef100_A0A0D1BUI2
UniRef50	UniRef50_C5ANK3
UniRef90	UniRef90_A0A0A5AJ28

Product

Feature Type	CDS
Coding Frame	1
Product Name	putative TraF conjugative transfer protein
Synonyms
Evidence for Translation
Charge (pH 7)	-5.68
Kyte-Doolittle Hydrophobicity Value	-0.293
Molecular Weight (kDa)	30465.1
Isoelectric Point (pI)	5.33

Subcellular localization

Individual Mappings	Localization Confidence PMID Periplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 49 genera

Orthologs/Comparative Genomics

Burkholderia Ortholog Group	BG007443 (40 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: pBCA025 Search term: traF Search term: putative TraF conjugative transfer protein

Human Homologs

References