Burkholderia cenocepacia J2315, BCAL1688 (orbS)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:1900704 regulation of siderophore biosynthetic process
IMP
Inferred from Mutant Phenotype
Term mapped from: Geoff Winsor, Brinkman Lab
ECO:0000315
mutant phenotype evidence used in manual assertion
16672617 Reviewed by curator
Biological Process GO:0033212 iron import into cell
IMP
Inferred from Mutant Phenotype
ECO:0000315
mutant phenotype evidence used in manual assertion
16672617 Reviewed by curator
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF88946
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006352 DNA-templated transcription, initiation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF88946
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF88946
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF88946 IPR013325 RNA polymerase sigma factor, region 2 43 131 8.63E-13
SUPERFAMILY SSF88659 IPR013324 RNA polymerase sigma factor, region 3/4-like 129 203 5.23E-11
Gene3D G3DSA:1.10.10.10 IPR036388 Winged helix-like DNA-binding domain superfamily 119 205 4.1E-8
Gene3D G3DSA:1.10.1740.10 33 116 5.7E-7
TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family IPR014284 RNA polymerase sigma-70 like domain 51 201 4.2E-19
Pfam PF04542 Sigma-70 region 2 IPR007627 RNA polymerase sigma-70 region 2 51 113 5.7E-12

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.