Burkholderia cenocepacia AU 1054, BCEN_RS14830

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003700 DNA binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00344
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0005622 intracellular
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00344
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF13404
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00344
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF13404 AsnC-type helix-turn-helix domain IPR000485 AsnC-type HTH domain 4 45 1.1E-11
SMART SM00344 IPR019888 Transcription regulator AsnC-type 4 113 7.9E-31
SUPERFAMILY SSF46785 IPR011991 Winged helix-turn-helix DNA-binding domain 3 63 2.04E-14
Gene3D G3DSA:3.30.70.920 56 154 4.1E-29
PRINTS PR00033 AsnC bacterial regulatory protein HTH signature IPR000485 AsnC-type HTH domain 20 31 2.4E-9
PRINTS PR00033 AsnC bacterial regulatory protein HTH signature IPR000485 AsnC-type HTH domain 4 20 2.4E-9
PRINTS PR00033 AsnC bacterial regulatory protein HTH signature IPR000485 AsnC-type HTH domain 31 50 2.4E-9
SUPERFAMILY SSF54909 IPR011008 Dimeric alpha-beta barrel 64 153 5.63E-21
ProSiteProfiles PS50956 AsnC-type HTH domain profile. IPR000485 AsnC-type HTH domain 4 65 32.092
Pfam PF01037 Lrp/AsnC ligand binding domain IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain 73 143 8.8E-22
Gene3D G3DSA:1.10.10.10 IPR011991 Winged helix-turn-helix DNA-binding domain 1 55 8.9E-14

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.