BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0006[320372] (425 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0007[320372] (332 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0008[320372] (314 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0009[320372] (267 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0010[320372] (206 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0011[320372] (362 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ENSP00000356218 pep:known-ccds chromosome:NCBI36:1:201197620:201... 70 5e-12 ENSP00000299498 pep:known-ccds chromosome:NCBI36:11:7642909:7651... 64 2e-10 ENSP00000354468 pep:known-ccds chromosome:NCBI36:22:41344765:413... 62 7e-10 ENSP00000338461 pep:known-ccds chromosome:NCBI36:22:41344765:413... 62 8e-10 ENSP00000299497 pep:known chromosome:NCBI36:11:7642909:7651397:-... 58 2e-08 ENSP00000285083 pep:known-ccds chromosome:NCBI36:3:16281712:1632... 52 1e-06 >ENSP00000356218 pep:known-ccds chromosome:NCBI36:1:201197620:201203031:-1 gene:ENSG00000159348 transcript:ENST00000367249 CCDS1431.1 Length = 305 Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 58/214 (27%), Positives = 99/214 (46%), Gaps = 35/214 (16%) Query: 41 GQFVTLKAHVDGEETRRSYSICVGTTDYDR---DGELRIGIKRVR-----GGRFSNFAFD 92 G+ + L +DG R Y+ T+D D+ D +++ +K V GG+ S + D Sbjct: 80 GKHIYLSTRIDGSLVIRPYTPV--TSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQY-LD 136 Query: 93 TLKPGHTIDVMTPDGRFFTHLNAGH---------------GKQYVAFAGGSGITPVLAIV 137 +LK G ++ P G T+ GH K+ AGG+GITP+L ++ Sbjct: 137 SLKVGDVVEFRGPSG-LLTYTGKGHFNIQPNKKSPPEPRVAKKLGMIAGGTGITPMLQLI 195 Query: 138 KTTLEL--EPRSTFTLIYGNRSVDSIMFAEELEDLKNRFMQRLALYHVLSDDVQDVELFN 195 + L++ +P F L++ N++ I+ E+LE+L+ R+ R L+ L +D Sbjct: 196 RAILKVPEDPTQCF-LLFANQTEKDIILREDLEELQARYPNRFKLWFTLDHPPKDWAYSK 254 Query: 196 GVLDQAKCAAFLDSLVPAATIDE-AFICGPAPMM 228 G + A + +PA D +CGP PM+ Sbjct: 255 GFV----TADMIREHLPAPGDDVLVLLCGPPPMV 284 >ENSP00000299498 pep:known-ccds chromosome:NCBI36:11:7642909:7651397:-1 gene:ENSG00000166394 transcript:ENST00000299498 CCDS7780.1 Length = 276 Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 56/211 (26%), Positives = 97/211 (45%), Gaps = 29/211 (13%) Query: 41 GQFVTLKAHVDGEETRRSYSICVGTTDYDR---DGELRIGIKRVR-----GGRFSNFAFD 92 G +V L A +D E R+Y+ ++D DR D ++I K V GG+ + + + Sbjct: 51 GNYVQLLAKIDNELVVRAYTPV--SSDDDRGFVDLIIKIYFKNVHPQYPEGGKMTQY-LE 107 Query: 93 TLKPGHTIDVMTPDGRFFTHLNAGHG---------KQYVA-----FAGGSGITPVLAIVK 138 +K G TI P GR F H G K+ +A AGG+GITP+L +++ Sbjct: 108 NMKIGETIFFRGPRGRLFYHGPGNLGIRPDQTSEPKKTLADHLGMIAGGTGITPMLQLIR 167 Query: 139 -TTLELEPRSTFTLIYGNRSVDSIMFAEELEDLKNRFMQRLALYHVLSDDVQDVELFNGV 197 T + R+ +LI+ N++ + I+ +ELE++ + L++ L + +G Sbjct: 168 HITKDPSDRTRMSLIFANQTEEDILVRKELEEIARTHPDQFNLWYTLDRPPIGWKYSSGF 227 Query: 198 LDQAKCAAFLDSLVPAATIDEAFICGPAPMM 228 + + L P A +CGP P++ Sbjct: 228 V---TADMIKEHLPPPAKSTLILVCGPPPLI 255 >ENSP00000354468 pep:known-ccds chromosome:NCBI36:22:41344765:41375349:-1 gene:ENSG00000100243 transcript:ENST00000361740 CCDS14040.1 Length = 278 Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 58/248 (23%), Positives = 107/248 (43%), Gaps = 36/248 (14%) Query: 7 HPLRIRDVRPETADAVTVSFEVPPELRDAYRFTQGQFVTLKAHVDGEETRRSYSICVGTT 66 +PLR+ D + D F +P + GQ + L A +DG R Y+ ++ Sbjct: 20 YPLRLIDREIISHDTRRFRFALP-SPQHILGLPVGQHIYLSARIDGNLVVRPYTPI--SS 76 Query: 67 DYDR---DGELRIGIKRVR-----GGRFSNFAFDTLKPGHTIDVMTPDGRFFTHLNAGHG 118 D D+ D +++ K GG+ S + ++++ G TI+ P G + G G Sbjct: 77 DDDKGFVDLVIKVYFKDTHPKFPAGGKMSQY-LESMQIGDTIEFRGPSGLL---VYQGKG 132 Query: 119 KQYV-----------------AFAGGSGITPVLAIVKTTL-ELEPRSTFTLIYGNRSVDS 160 K + AGG+GITP+L +++ + + + + L++ N++ Sbjct: 133 KFAIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKD 192 Query: 161 IMFAEELEDLKNRFMQRLALYHVLSDDVQDVELFNGVLDQAKCAAFLDSLVPAATIDEAF 220 I+ ELE+L+N+ R L++ L + + G +++ D L P Sbjct: 193 ILLRPELEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIR---DHLPPPEEEPLVL 249 Query: 221 ICGPAPMM 228 +CGP PM+ Sbjct: 250 MCGPPPMI 257 >ENSP00000338461 pep:known-ccds chromosome:NCBI36:22:41344765:41375349:-1 gene:ENSG00000100243 transcript:ENST00000352397 CCDS33658.1 Length = 301 Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 58/248 (23%), Positives = 107/248 (43%), Gaps = 36/248 (14%) Query: 7 HPLRIRDVRPETADAVTVSFEVPPELRDAYRFTQGQFVTLKAHVDGEETRRSYSICVGTT 66 +PLR+ D + D F +P + GQ + L A +DG R Y+ ++ Sbjct: 43 YPLRLIDREIISHDTRRFRFALPSP-QHILGLPVGQHIYLSARIDGNLVVRPYTPI--SS 99 Query: 67 DYDR---DGELRIGIKRVR-----GGRFSNFAFDTLKPGHTIDVMTPDGRFFTHLNAGHG 118 D D+ D +++ K GG+ S + ++++ G TI+ P G + G G Sbjct: 100 DDDKGFVDLVIKVYFKDTHPKFPAGGKMSQY-LESMQIGDTIEFRGPSGLL---VYQGKG 155 Query: 119 KQYV-----------------AFAGGSGITPVLAIVKTTL-ELEPRSTFTLIYGNRSVDS 160 K + AGG+GITP+L +++ + + + + L++ N++ Sbjct: 156 KFAIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKD 215 Query: 161 IMFAEELEDLKNRFMQRLALYHVLSDDVQDVELFNGVLDQAKCAAFLDSLVPAATIDEAF 220 I+ ELE+L+N+ R L++ L + + G +++ D L P Sbjct: 216 ILLRPELEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIR---DHLPPPEEEPLVL 272 Query: 221 ICGPAPMM 228 +CGP PM+ Sbjct: 273 MCGPPPMI 280 >ENSP00000299497 pep:known chromosome:NCBI36:11:7642909:7651397:-1 gene:ENSG00000166394 transcript:ENST00000299497 Length = 237 Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 82/167 (49%), Gaps = 26/167 (15%) Query: 41 GQFVTLKAHVDGEETRRSYSICVGTTDYDR---DGELRIGIKRVR-----GGRFSNFAFD 92 G +V L A +D E R+Y+ ++D DR D ++I K V GG+ + + + Sbjct: 51 GNYVQLLAKIDNELVVRAYTPV--SSDDDRGFVDLIIKIYFKNVHPQYPEGGKMTQY-LE 107 Query: 93 TLKPGHTIDVMTPDGRFFTHLNAGHG---------KQYVA-----FAGGSGITPVLAIVK 138 +K G TI P GR F H G K+ +A AGG+GITP+L +++ Sbjct: 108 NMKIGETIFFRGPRGRLFYHGPGNLGIRPDQTSEPKKTLADHLGMIAGGTGITPMLQLIR 167 Query: 139 -TTLELEPRSTFTLIYGNRSVDSIMFAEELEDLKNRFMQRLALYHVL 184 T + R+ +LI+ N++ + I+ +ELE++ + L++ L Sbjct: 168 HITKDPSDRTRMSLIFANQTEEDILVRKELEEIARTHPDQFNLWYTL 214 >ENSP00000285083 pep:known-ccds chromosome:NCBI36:3:16281712:16320487:1 gene:ENSG00000154814 transcript:ENST00000285083 CCDS2630.1 Length = 312 Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 52/232 (22%), Positives = 94/232 (40%), Gaps = 27/232 (11%) Query: 36 YRFTQGQFVTLKAHVDGEETRRSYSICVGTTDYDRDGELRIGIKRVRGGRFSN-----FA 90 + F GQ+V + G +SIC +++ + + +K ++N + Sbjct: 90 FSFKAGQWVDF--FIPGVSVVGGFSICSSPRLLEQERVIELAVK------YTNHPPALWV 141 Query: 91 FDTLKPGHTIDVMTPDGRFFTHLNAGHGKQYVAFAGGSGITPVLAIVKTTLEL-----EP 145 +T + V FF A + V AGG GI P+L+I++ +L Sbjct: 142 HNTCTLDCEVAVRVGGEFFFDPQPADASRNLVLIAGGVGINPLLSILRHAADLLREQANK 201 Query: 146 RS-----TFTLIYGNRSVDSIMFAEELEDLKNRFMQRLAL-YHVLSDDVQ-DVELFNGVL 198 R+ T L Y ++ ++F + + DL N F +++A HV Q + EL + Sbjct: 202 RNGYEIGTIKLFYSAKNTSELLFKKNILDLVNEFPEKIACSLHVTKQTTQINAELKPYIT 261 Query: 199 DQAKCAAFLDSLVPAATIDEAFICGPAPMMDXXXXXXXXXGVPRERVHVERF 250 + + + T+ +ICGP PM D VP+E + E++ Sbjct: 262 EGRITEKEIRDHISKETL--FYICGPPPMTDFFSKQLENNHVPKEHICFEKW 311 BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0012[320372] (276 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0013[320372] (199 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0014[320372] (255 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0015[320372] (171 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0016[320372] (365 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ENSP00000289004 pep:known-ccds chromosome:NCBI36:12:120761818:12... 116 3e-26 ENSP00000361198 pep:known-ccds chromosome:NCBI36:1:45565164:4556... 83 4e-16 ENSP00000335060 pep:known-ccds chromosome:NCBI36:1:45565132:4556... 83 4e-16 >ENSP00000289004 pep:known-ccds chromosome:NCBI36:12:120761818:120781152:-1 gene:ENSG00000158104 transcript:ENST00000289004 CCDS9224.1 Length = 393 Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 102/351 (29%), Positives = 160/351 (45%), Gaps = 35/351 (9%) Query: 34 RMGFTAVARH------RHKDVTLYRQGDINFIINAEPDSFAQRFAR---LHGPSICAIAF 84 +MGF +A R + +QG I F++++ + + + HG + IAF Sbjct: 39 KMGFEPLAYRGLETGSREVVSHVIKQGKIVFVLSSALNPWNKEMGDHLVKHGDGVKDIAF 98 Query: 85 RVQDAAKAYRHALELGA------WGFDNKTGPMELNIPAIKGIGDSLIYFVDRWRGKNGA 138 V+D + A E GA W +K G ++ + ++ GD+ V++ Sbjct: 99 EVEDCDYIVQKARERGAKIMREPWVEQDKFGKVKFAV--LQTYGDTTHTLVEKMNYIGQF 156 Query: 139 KPGAIGDISIYDVDFEPIPGADPNPAGHGLTYIDHLTHNVHRGRMQEWAEFYERLFNFRE 198 PG + D +P L IDH+ N M +E+Y + F Sbjct: 157 LPGYEAP-AFMDPLLPKLPKC-------SLEMIDHIVGNQPDQEMVSASEWYLKNLQFHR 208 Query: 199 VRYFD---IEGKVTGVKSKAMTSPCGKIRIPINEEG-SDTAGQIQEYLDAYRGEGIQHIA 254 D + + + ++S + + I++PINE QIQEY+D G G+QHIA Sbjct: 209 FWSVDDTQVHTEYSSLRSIVVANYEESIKMPINEPAPGKKKSQIQEYVDYNGGAGVQHIA 268 Query: 255 LGAADIYRAVDGLRAKGVTLLDTIDTYYELVDRRVPNH----GEPLDELRKRKILIDGAH 310 L DI A+ LR +G+ L TYY+ + ++ E +D L + KIL+D Sbjct: 269 LKTEDIITAIRHLRERGLEFLSVPSTYYKQLREKLKTAKIKVKENIDALEELKILVDYDE 328 Query: 311 DDLLLQIFTEN-QIGP-IFFEIIQRKGNQGFGEGNFKALFESIELDQIRRG 359 LLQIFT+ Q P +F E+IQR +QGFG GNF +LF++ E +Q RG Sbjct: 329 KGYLLQIFTKPVQDRPTLFLEVIQRHNHQGFGAGNFNSLFKAFEEEQNLRG 379 >ENSP00000361198 pep:known-ccds chromosome:NCBI36:1:45565164:45566792:1 gene:ENSG00000186603 transcript:ENST00000372125 CCDS519.1 Length = 371 Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 93/378 (24%), Positives = 157/378 (41%), Gaps = 59/378 (15%) Query: 18 IEYTAPDPKALGQLFERM-GFTAVARHRHKDVTLYRQ-----GDINFIINAEPDSFAQRF 71 I + P + L + +R+ GF +A ++V +RQ GD F++N S + Sbjct: 11 IAFHVPAGQPLARNLQRLFGFQPLA---SREVDGWRQLALRSGDAVFLVNEGAGSGEPLY 67 Query: 72 A---RLHGPSICAIAFRVQDAAKAYRHALELGAWGFDNKTGPMELNIPAIKGIGDSLIYF 128 R PS + F V DA A R EL A G P+ ++ + Y Sbjct: 68 GLDPRHAVPSATNLCFDVADAGAATR---ELAALGCSVPVPPVR-----VRDAQGAATYA 119 Query: 129 VDRWRGKNGAKPGAIGDISI-----YDVDFEPIPGADPNPAGHG---LTYIDHLTHNVHR 180 V + P I +++ Y F +PG P + G ++ +DHLT Sbjct: 120 VV-------SSPAGILSLTLLERAGYRGPF--LPGFRPVSSAPGPGWVSRVDHLTLACTP 170 Query: 181 GRMQEWAEFYERLFNFREVRYFDIEGK-----------VTGVKSKAMTSPCGKIRIPINE 229 G ++ F + E + G++ A+ + G I +P Sbjct: 171 GSSPTLLRWFHDCLGFCHLPLSPGEDPELGLEMTAGFGLGGLRLTALQAQPGSI-VPTLV 229 Query: 230 EGSDTAG------QIQEYLDAYRGEGIQHIALGAADIYRAVDGLRAKGVTLLDTIDTYYE 283 G Q++++L ++G G+QH+ L +I A +G+ G L YY+ Sbjct: 230 LAESLPGATTRQDQVEQFLARHKGPGLQHVGLYTPNIVEATEGVATAGGQFLAPPGAYYQ 289 Query: 284 LV--DRRVPNHGEPLDELRKRKILIDGAHDDLLLQIFTENQIG--PIFFEIIQRKGNQGF 339 +R++ G L ++ IL+DG LLQ+FT++ F E+IQR+G GF Sbjct: 290 QPGKERQIRAAGHEPHLLARQGILLDGDKGKFLLQVFTKSLFTEDTFFLELIQRQGATGF 349 Query: 340 GEGNFKALFESIELDQIR 357 G+GN +AL++S++ R Sbjct: 350 GQGNIRALWQSVQEQSAR 367 >ENSP00000335060 pep:known-ccds chromosome:NCBI36:1:45565132:45566934:1 gene:ENSG00000186603 transcript:ENST00000334815 CCDS519.1 Length = 371 Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 93/378 (24%), Positives = 157/378 (41%), Gaps = 59/378 (15%) Query: 18 IEYTAPDPKALGQLFERM-GFTAVARHRHKDVTLYRQ-----GDINFIINAEPDSFAQRF 71 I + P + L + +R+ GF +A ++V +RQ GD F++N S + Sbjct: 11 IAFHVPAGQPLARNLQRLFGFQPLA---SREVDGWRQLALRSGDAVFLVNEGAGSGEPLY 67 Query: 72 A---RLHGPSICAIAFRVQDAAKAYRHALELGAWGFDNKTGPMELNIPAIKGIGDSLIYF 128 R PS + F V DA A R EL A G P+ ++ + Y Sbjct: 68 GLDPRHAVPSATNLCFDVADAGAATR---ELAALGCSVPVPPVR-----VRDAQGAATYA 119 Query: 129 VDRWRGKNGAKPGAIGDISI-----YDVDFEPIPGADPNPAGHG---LTYIDHLTHNVHR 180 V + P I +++ Y F +PG P + G ++ +DHLT Sbjct: 120 VV-------SSPAGILSLTLLERAGYRGPF--LPGFRPVSSAPGPGWVSRVDHLTLACTP 170 Query: 181 GRMQEWAEFYERLFNFREVRYFDIEGK-----------VTGVKSKAMTSPCGKIRIPINE 229 G ++ F + E + G++ A+ + G I +P Sbjct: 171 GSSPTLLRWFHDCLGFCHLPLSPGEDPELGLEMTAGFGLGGLRLTALQAQPGSI-VPTLV 229 Query: 230 EGSDTAG------QIQEYLDAYRGEGIQHIALGAADIYRAVDGLRAKGVTLLDTIDTYYE 283 G Q++++L ++G G+QH+ L +I A +G+ G L YY+ Sbjct: 230 LAESLPGATTRQDQVEQFLARHKGPGLQHVGLYTPNIVEATEGVATAGGQFLAPPGAYYQ 289 Query: 284 LV--DRRVPNHGEPLDELRKRKILIDGAHDDLLLQIFTENQIG--PIFFEIIQRKGNQGF 339 +R++ G L ++ IL+DG LLQ+FT++ F E+IQR+G GF Sbjct: 290 QPGKERQIRAAGHEPHLLARQGILLDGDKGKFLLQVFTKSLFTEDTFFLELIQRQGATGF 349 Query: 340 GEGNFKALFESIELDQIR 357 G+GN +AL++S++ R Sbjct: 350 GQGNIRALWQSVQEQSAR 367 BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0017[320372] (65 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0018[320372] (1193 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0019[320372] (773 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ENSP00000358719 pep:known-ccds chromosome:NCBI36:6:83976827:8419... 90 8e-18 ENSP00000352657 pep:known-ccds chromosome:NCBI36:11:85829798:860... 84 7e-16 ENSP00000321070 pep:known-ccds chromosome:NCBI36:18:46659433:467... 71 4e-12 ENSP00000372384 pep:known chromosome:NCBI36:18:46659433:46728256... 68 4e-11 >ENSP00000358719 pep:known-ccds chromosome:NCBI36:6:83976827:84197509:-1 gene:ENSG00000065833 transcript:ENST00000369705 CCDS34492.1 Length = 572 Score = 90.1 bits (222), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 99/356 (27%), Positives = 154/356 (43%), Gaps = 62/356 (17%) Query: 86 VVTNGTAVLGLGNIG---------------------PLAAKPVMEGKGC----LFKK--F 118 VVT+G +LGLG++G P PV+ G L K + Sbjct: 149 VVTDGERILGLGDLGCNGMGIPVGKLALYTACGGMNPQECLPVILDVGTENEELLKDPLY 208 Query: 119 AGIDVFDIELAESDP--DKLVEAIAMLEPTLGGINLEDIKAPECFYIEQKLRERMKIPVF 176 G+ + +E D D+ +EA++ I ED F + K R + F Sbjct: 209 IGLRQRRVRGSEYDDFLDEFMEAVSSKYGMNCLIQFEDFANVNAFRLLNKYRNQY--CTF 266 Query: 177 HDDQHGTAIIASAAILNGLKVVGKDLSSVKLVCSGAGAAAIACLDLLV----KLGLSK-- 230 +DD GTA +A A +L L++ LS ++ GAG AA+ L+V K GL K Sbjct: 267 NDDIQGTASVAVAGLLAALRITKNKLSDQTILFQGAGEAALGIAHLIVMALEKEGLPKEK 326 Query: 231 --SNVLVADSKGVIYEGRGNLDPSKQRYAATTGARTLADAIAGA---DVFLGCSS-AGVL 284 + + DSKG+I +GR +L K+++A +AI +G ++ G Sbjct: 327 AIKKIWLVDSKGLIVKGRASLTQEKEKFAHEHEEMKNLEAIVQEIKPTALIGVAAIGGAF 386 Query: 285 KQDMVKTMA---DRPLILALANP--EPEIRPEDA-KAVRPDAIVAT-----------GRS 327 + ++K MA +RP+I AL+NP + E E K + AI A+ G++ Sbjct: 387 SEQILKDMAAFNERPIIFALSNPTSKAECSAEQCYKITKGRAIFASGSPFDPVTLPNGQT 446 Query: 328 DYPNQVNNVLCFPFIFRGALDVGATTITEEMKLACVRAIAELAQETDQSEEVAKAY 383 YP Q NN FP + G + G IT+ + L IA+ Q +D+ E + Y Sbjct: 447 LYPGQGNNSYVFPGVALGVVACGLRQITDNIFLTTAEVIAQ--QVSDKHLEEGRLY 500 >ENSP00000352657 pep:known-ccds chromosome:NCBI36:11:85829798:86061075:-1 gene:ENSG00000151376 transcript:ENST00000359636 CCDS8277.1 Length = 604 Score = 84.0 bits (206), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 96/352 (27%), Positives = 148/352 (42%), Gaps = 64/352 (18%) Query: 86 VVTNGTAVLGLGNIGPLA-AKPVMEGKGCLFKKFAGID-------VFDI----ELAESDP 133 VVT+G +LGLG++G PV GK L+ G++ + D+ E DP Sbjct: 184 VVTDGERILGLGDLGCYGMGIPV--GKLALYTACGGVNPQQCLPVLLDVGTNNEELLRDP 241 Query: 134 ---------------DKLVEAIAMLEPTLGGIN----LEDIKAPECFYIEQKLRERMKIP 174 D L++ GIN ED F + K R K Sbjct: 242 LYIGLKHQRVHGKAYDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRLLNKYRN--KYC 299 Query: 175 VFHDDQHGTAIIASAAILNGLKVVGKDLSSVKLVCSGAGAAAIACLDLLV----KLGLSK 230 +F+DD GTA +A A IL L++ LS+ V GAG AA+ LLV K G+ K Sbjct: 300 MFNDDIQGTASVAVAGILAALRITKNKLSNHVFVFQGAGEAAMGIAHLLVMALEKEGVPK 359 Query: 231 S----NVLVADSKGVIYEGRGNLDPSKQRYAATT-GARTLADAI--AGADVFLGCSS-AG 282 + + + DSKG+I +GR +L+ K+ +A +L + + +G ++ AG Sbjct: 360 AEATRKIWMVDSKGLIVKGRSHLNHEKEMFAQDHPEVNSLEEVVRLVKPTAIIGVAAIAG 419 Query: 283 VLKQDMVKTMA---DRPLILALANPEPEIRPEDAKAVR--------------PDAIVATG 325 + +++ MA +RP+I AL+NP + K R + G Sbjct: 420 AFTEQILRDMASFHERPIIFALSNPTSKAECTAEKCYRVTEGRGIFASGSPFKSVTLEDG 479 Query: 326 RSDYPNQVNNVLCFPFIFRGALDVGATTITEEMKLACVRAIAELAQETDQSE 377 ++ P Q NN FP + G + G I +E+ L IA+ E S+ Sbjct: 480 KTFIPGQGNNAYVFPGVALGVIAGGIRHIPDEIFLLTAEQIAQEVSEQHLSQ 531 >ENSP00000321070 pep:known-ccds chromosome:NCBI36:18:46659433:46728256:1 gene:ENSG00000082212 transcript:ENST00000321341 CCDS11948.1 Length = 584 Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 96/359 (26%), Positives = 152/359 (42%), Gaps = 69/359 (19%) Query: 86 VVTNGTAVLGLGNIGPLAAKPVMEGKGCLFKKFAGI---------------------DVF 124 VVT+G +LGLG++G + + GK CL+ AGI D F Sbjct: 159 VVTDGERILGLGDLG-VYGMGIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNIALLKDPF 217 Query: 125 DIELAESDP---------DKLVEAIAMLEPTLGGINLEDIKAPECFYIEQKLRERMKIPV 175 + L + D+ ++AI I ED F +K RE K Sbjct: 218 YMGLYQKRDRTQQYDDLIDEFMKAITDRYGRNTLIQFEDFGNHNAFRFLRKYRE--KYCT 275 Query: 176 FHDDQHGTAIIASAAILNGLKVVGKDLSSVKLVCSGAGAAAIACLDL----LVKLGLS-- 229 F+DD GTA +A A +L KV+ K +S K++ GAG AA+ +L +V+ GLS Sbjct: 276 FNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQ 335 Query: 230 --KSNVLVADSKGVIYEGRGNLDPSKQRYAATTGARTLADAIAGA------DVFLGCSSA 281 + + + D G++ +GR S Q + ++ D A +G + A Sbjct: 336 EAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNILKPSTIIGVAGA 395 Query: 282 G-VLKQDMVKTMA---DRPLILALANP--EPEIRPEDAKAVRPDAI------------VA 323 G + D+++ MA +RP+I AL+NP + E E+A + + Sbjct: 396 GRLFTPDVIRAMASINERPVIFALSNPTAQAECTAEEAYTLTEGRCLFASGSPFGPVKLT 455 Query: 324 TGRSDYPNQVNNVLCFPFIFRGALDVGATTITEEMKLACVRAIAELAQETDQSEEVAKA 382 GR P Q NNV FP + + I++ + L +A+ +Q TD EE+A+ Sbjct: 456 DGRVFTPGQGNNVYIFPGVALAVILCNTRHISDSVFLEAAKALT--SQLTD--EELAQG 510 >ENSP00000372384 pep:known chromosome:NCBI36:18:46659433:46728256:1 gene:ENSG00000082212 transcript:ENST00000382927 Length = 479 Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 87/317 (27%), Positives = 133/317 (41%), Gaps = 65/317 (20%) Query: 86 VVTNGTAVLGLGNIGPLAAKPVMEGKGCLFKKFAGI---------------------DVF 124 VVT+G +LGLG++G + + GK CL+ AGI D F Sbjct: 159 VVTDGERILGLGDLG-VYGMGIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNIALLKDPF 217 Query: 125 DIELAESDP---------DKLVEAIAMLEPTLGGINLEDIKAPECFYIEQKLRERMKIPV 175 + L + D+ ++AI I ED F +K RE K Sbjct: 218 YMGLYQKRDRTQQYDDLIDEFMKAITDRYGRNTLIQFEDFGNHNAFRFLRKYRE--KYCT 275 Query: 176 FHDDQHGTAIIASAAILNGLKVVGKDLSSVKLVCSGAGAAAIACLDL----LVKLGLS-- 229 F+DD GTA +A A +L KV+ K +S K++ GAG AA+ +L +V+ GLS Sbjct: 276 FNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQ 335 Query: 230 --KSNVLVADSKGVIYEGRGNLDPSKQRYAATTGARTLADAIAGA------DVFLGCSSA 281 + + + D G++ +GR S Q + ++ D A +G + A Sbjct: 336 EAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNILKPSTIIGVAGA 395 Query: 282 G-VLKQDMVKTMA---DRPLILALANP--EPEIRPEDAKAVRPDAI------------VA 323 G + D+++ MA +RP+I AL+NP + E E+A + + Sbjct: 396 GRLFTPDVIRAMASINERPVIFALSNPTAQAECTAEEAYTLTEGRCLFASGSPFGPVKLT 455 Query: 324 TGRSDYPNQVNNVLCFP 340 GR P Q NNV FP Sbjct: 456 DGRVFTPGQGNNVYIFP 472 BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0020[320372] (228 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ENSP00000232607 pep:known-ccds chromosome:NCBI36:3:125931903:125... 87 2e-17 >ENSP00000232607 pep:known-ccds chromosome:NCBI36:3:125931903:125946318:1 gene:ENSG00000114491 transcript:ENST00000232607 CCDS3029.1 Length = 480 Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 58/207 (28%), Positives = 97/207 (46%), Gaps = 7/207 (3%) Query: 17 LLEVQAVHFNADKPFIFTSGWASPVYIDCRKLISFPRVRRGLMEMAEATILRDVGFEQID 76 L +VQA F F+ SG +SP+YID R ++S PR+ + ++ T ++ G D Sbjct: 15 LYDVQAFKFG---DFVLKSGLSSPIYIDLRGIVSRPRLLSQVADILFQTA-QNAGI-SFD 69 Query: 77 AVAGGETAGIPFAAWIADRMMLPMQYVRKKPKGFGRNAQIEGYLEEGSRVLLVEDLTTDS 136 V G +P A I +PM RK+ K +G +EG + G L++ED+ T Sbjct: 70 TVCGVPYTALPLATVICSTNQIPMLIRRKETKDYGTKRLVEGTINPGETCLIIEDVVTSG 129 Query: 137 RSKINFVNALRTAGAKVNHCFVLFHYDIFKESVSVLKDIDVDLHALATWWDVLRVAKASG 196 S + V L+ G KV VL D + L+ + LH++ T +L + + Sbjct: 130 SSVLETVEVLQKEGLKVTDAIVLL--DREQGGKDKLQAHGIRLHSVCTLSKMLEILEQQK 187 Query: 197 YFETKTLDEVEKFLHAPAEWSAAHGGA 223 + +T+ V++F+ +A H G+ Sbjct: 188 KVDAETVGRVKRFIQENVFVAANHNGS 214 BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0021[320372] (198 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0022[320372] (264 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0023[320372] (314 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0024[320372] (457 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0025[320372] (416 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0026[320372] (276 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0027[320372] (312 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0028[320372] (422 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0029[320372] (222 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0030[320372] (603 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ENSP00000322716 pep:known-ccds chromosome:NCBI36:16:4793208:4837... 86 1e-16 ENSP00000371413 pep:known chromosome:NCBI36:16:4793208:4837294:-... 86 2e-16 >ENSP00000322716 pep:known-ccds chromosome:NCBI36:16:4793208:4837294:-1 gene:ENSG00000140632 transcript:ENST00000321919 CCDS10524.1 Length = 553 Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 70/283 (24%), Positives = 114/283 (40%), Gaps = 5/283 (1%) Query: 314 DMDIGFIGAGEMGSAIAGNLLKAGHRVRVWNRSAERVAPLVALGAQQVATVADAFAG-DA 372 D IGF+G G MGS I NLLK GH V VWNR+AE+ + GA+ T A+ + D Sbjct: 267 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDI 326 Query: 373 VFSMLX--XXXXXXXXXXXXLLEQAPRGLIHVNMATISVXXXXXXXXXXXXXXIHYVAAP 430 F+ + +L+ G +V+M+T+ ++ AP Sbjct: 327 TFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAP 386 Query: 431 VMGRPHVXXXXXXXXXXXXXXEAIDRMQPAFDAIGQRTWRLGSLPQHANAVKIAANFTIA 490 V G + + F A+G+ ++ LG + A + I N Sbjct: 387 VSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLI-VNMVQG 445 Query: 491 SAIETMGEAGALLAAHGVAMNDYLDVITNSVFPGPVYQGYGAMIAESRYEPALFKARLGL 550 S + T+ E L G + LD++ I + ++P + + Sbjct: 446 SFMATIAEGLTLAHVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYI-Q 504 Query: 551 KDVRLALEAGDALSVPLPVASVVRDSLIEAVAHGHGDKDFAVL 593 KD+RLA+ GDA++ P P+A+ + A A D D + + Sbjct: 505 KDLRLAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAV 547 >ENSP00000371413 pep:known chromosome:NCBI36:16:4793208:4837294:-1 gene:ENSG00000140632 transcript:ENST00000381983 Length = 536 Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 70/283 (24%), Positives = 114/283 (40%), Gaps = 5/283 (1%) Query: 314 DMDIGFIGAGEMGSAIAGNLLKAGHRVRVWNRSAERVAPLVALGAQQVATVADAFAG-DA 372 D IGF+G G MGS I NLLK GH V VWNR+AE+ + GA+ T A+ + D Sbjct: 250 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDI 309 Query: 373 VFSMLX--XXXXXXXXXXXXLLEQAPRGLIHVNMATISVXXXXXXXXXXXXXXIHYVAAP 430 F+ + +L+ G +V+M+T+ ++ AP Sbjct: 310 TFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAP 369 Query: 431 VMGRPHVXXXXXXXXXXXXXXEAIDRMQPAFDAIGQRTWRLGSLPQHANAVKIAANFTIA 490 V G + + F A+G+ ++ LG + A + I N Sbjct: 370 VSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLI-VNMVQG 428 Query: 491 SAIETMGEAGALLAAHGVAMNDYLDVITNSVFPGPVYQGYGAMIAESRYEPALFKARLGL 550 S + T+ E L G + LD++ I + ++P + + Sbjct: 429 SFMATIAEGLTLAHVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYI-Q 487 Query: 551 KDVRLALEAGDALSVPLPVASVVRDSLIEAVAHGHGDKDFAVL 593 KD+RLA+ GDA++ P P+A+ + A A D D + + Sbjct: 488 KDLRLAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAV 530 BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0031[320372] (251 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0032[320372] (225 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0033[320372] (71 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0034[320372] (135 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0035[320372] (105 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0036[320372] (468 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ENSP00000231706 pep:known-ccds chromosome:NCBI36:3:171667255:171... 70 5e-12 ENSP00000004531 pep:known-ccds chromosome:NCBI36:8:17445206:1747... 65 2e-10 ENSP00000250265 pep:known-ccds chromosome:NCBI36:8:17440685:1747... 62 1e-09 ENSP00000370128 pep:known-ccds chromosome:NCBI36:13:28981547:290... 54 3e-07 ENSP00000298085 pep:known-ccds chromosome:NCBI36:X:70062163:7006... 54 4e-07 ENSP00000363417 pep:known-ccds chromosome:NCBI36:X:70062157:7006... 54 4e-07 ENSP00000297524 pep:known-ccds chromosome:NCBI36:8:87295413:8731... 50 5e-06 >ENSP00000231706 pep:known-ccds chromosome:NCBI36:3:171667255:171786552:-1 gene:ENSG00000013293 transcript:ENST00000231706 CCDS33892.1 Length = 771 Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 79/342 (23%), Positives = 137/342 (40%), Gaps = 33/342 (9%) Query: 22 IALGAAIGVGLFLGSA-NAIKMAGPGIILSYIIGGAVIFVIMRALGEMAVHEP-VAGSFS 79 + +G+ +G G+++ S A +MAGPG+I+S+II + E V P GS Sbjct: 61 LGVGSCVGTGMYVVSGLVAKEMAGPGVIVSFIIAAVASILSGVCYAEFGVRVPKTTGSAY 120 Query: 80 RYARNYLGPLAGYLTGWNYWFLWLVTCIAEITAVG-IYMGIWFPDVPRWIWALAALATMG 138 Y+ +G + GWN +L+ A +A+ ++ + + RW+ ++G Sbjct: 121 TYSYVTVGEFVAFFIGWNLILEYLIGTAAGASALSSMFDSLANHTISRWM-----ADSVG 175 Query: 139 SVNLLTVKAYGEFEFWFALIKXXXXXXXXXXXXXXXXXXXXNHGVPMGISNL-------- 190 ++N L G+ E + + + + NL Sbjct: 176 TLNGL-----GKGEESYPDLLALLIAVIVTIIVALGVKNSIGFNNVLNVLNLAVWVFIMI 230 Query: 191 ----------WAHGGFFPNGAQGVLMSMQMVMFAYLGVEMIGLTAGEAANPQKTIPGAIN 240 WA G F P+G GVL +A++G ++I T EA NP +IP AI Sbjct: 231 AGLFFINGKYWAEGQFLPHGWSGVLQGAATCFYAFIGFDIIATTGEEAKNPNTSIPYAIT 290 Query: 241 SVFWRILLFYGGALFVILSIYPWNEIGTQGSPFVMTFERLGIKTAAGIINFVVLTAALSS 300 + L Y ++ + P+ I T+ SP + F G A ++ + S Sbjct: 291 ASLVICLTAYVSVSVILTLMVPYYTIDTE-SPLMEMFVAHGFYAAKFVVAIGSVAGLTVS 349 Query: 301 CNGGIFSTGRMLYNLAQQGHAPRTFGETTA-SGVPRRAILVS 341 G +F R++Y +A G R ++ + P A +VS Sbjct: 350 LLGSLFPMPRVIYAMAGDGLLFRFLAHVSSYTETPVVACIVS 391 >ENSP00000004531 pep:known-ccds chromosome:NCBI36:8:17445206:17472296:1 gene:ENSG00000003989 transcript:ENST00000004531 CCDS34852.1 Length = 658 Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/187 (27%), Positives = 89/187 (47%), Gaps = 9/187 (4%) Query: 188 SNLWAHGGFFPNGAQGVLMSMQMVMFAYLGVEMIGLTAGEAANPQKTIP-GAINSVFWRI 246 ++++ GGF P G G L +A++G + I T E NPQK IP G + S+ Sbjct: 241 TSIYGAGGFMPYGFTGTLAGAATCFYAFVGFDCIATTGEEVRNPQKAIPIGIVTSLLVCF 300 Query: 247 LLFYG--GALFVILSIYPWNEIGTQGSPFVMTFERLGIKTAAGIINFVVLTAALSSCNGG 304 + ++G AL +++ Y +E SP + FE +G A ++ L A +S G Sbjct: 301 MAYFGVSAALTLMMPYYLLDE----KSPLPVAFEYVGWGPAKYVVAAGSLCALSTSLLGS 356 Query: 305 IFSTGRMLYNLAQQGHAPRTFGETTASGVPRRAILVSMAALLVGVLLNYLVPEKVFVWVT 364 IF R++Y +A+ G + + + + I+ ++++ V L+ +L K V + Sbjct: 357 IFPMPRVIYAMAEDGLLFKCLAQINSKT--KTPIIATLSSGAVAALMAFLFDLKALVDMM 414 Query: 365 SISTFGA 371 SI T A Sbjct: 415 SIGTLMA 421 >ENSP00000250265 pep:known-ccds chromosome:NCBI36:8:17440685:17472296:1 gene:ENSG00000003989 transcript:ENST00000250265 CCDS6002.1 Length = 657 Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 51/187 (27%), Positives = 87/187 (46%), Gaps = 10/187 (5%) Query: 188 SNLWAHGGFFPNGAQGVLMSMQMVMFAYLGVEMIGLTAGEAANPQKTIP-GAINSVFWRI 246 ++++ GGF P G G L +A++G + I T E NPQK IP G + S+ Sbjct: 241 TSIYGAGGFMPYGFTGTLAGAATCFYAFVGFDCIATTGEEVRNPQKAIPIGIVTSLLVCF 300 Query: 247 LLFYG--GALFVILSIYPWNEIGTQGSPFVMTFERLGIKTAAGIINFVVLTAALSSCNGG 304 + ++G AL +++ Y +E SP + FE +G A ++ L A +S G Sbjct: 301 MAYFGVSAALTLMMPYYLLDE----KSPLPVAFEYVGWGPAKYVVAAGSLCALSTSLLGS 356 Query: 305 IFSTGRMLYNLAQQGHAPRTFGETTASGVPRRAILVSMAALLVGVLLNYLVPEKVFVWVT 364 +F R+L+ +A+ G R + P + ++ A ++ L+ +L K V + Sbjct: 357 MFPLPRILFAMARDGLLFRFLARVSKRQSP---VAATLTAGVISALMAFLFDLKALVDMM 413 Query: 365 SISTFGA 371 SI T A Sbjct: 414 SIGTLMA 420 >ENSP00000370128 pep:known-ccds chromosome:NCBI36:13:28981547:29067721:-1 gene:ENSG00000139514 transcript:ENST00000380752 CCDS9333.1 Length = 629 Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 3/176 (1%) Query: 194 GGFFPNGAQGVLMSMQMVMFAYLGVEMIGLTAGEAANPQKTIPGAINSVFWRILLFYGGA 253 GGF P G GVL +A++G + I T E NPQK IP I + + Y G Sbjct: 245 GGFMPFGFSGVLSGAATCFYAFVGFDCIATTGEEVKNPQKAIPVGIVASLLICFIAYFGV 304 Query: 254 LFVILSIYPWNEIGTQGSPFVMTFERLGIKTAAGIINFVVLTAALSSCNGGIFSTGRMLY 313 + + P+ + SP F+ +G + A + L A +S G +F R++Y Sbjct: 305 SAALTLMMPYFCLDNN-SPLPDAFKHVGWEGAKYAVAVGSLCALSASLLGSMFPMPRVIY 363 Query: 314 NLAQQGHAPRTFGETTASGVPRRAILVSMAALLVGVLLNYLVPEKVFVWVTSISTF 369 +A+ G + + I+ ++A+ V ++ +L K V + SI T Sbjct: 364 AMAEDGLLFKFLANVNDR--TKTPIIATLASGAVAAVMAFLFDLKDLVDLMSIGTL 417 Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 1/105 (0%) Query: 1 MQKGHSETDLHRGLGQRQMRLIALGAAIGVGLF-LGSANAIKMAGPGIILSYIIGGAVIF 59 + ET L R L + + +G+ +G G++ L A A + AGP I++S++I Sbjct: 19 VDCSREETRLSRCLNTFDLVALGVGSTLGAGVYVLAGAVARENAGPAIVISFLIAALASV 78 Query: 60 VIMRALGEMAVHEPVAGSFSRYARNYLGPLAGYLTGWNYWFLWLV 104 + GE P GS Y+ +G L ++TGWN +++ Sbjct: 79 LAGLCYGEFGARVPKTGSAYLYSYVTVGELWAFITGWNLILSYII 123 >ENSP00000298085 pep:known-ccds chromosome:NCBI36:X:70062163:70067700:-1 gene:ENSG00000165349 transcript:ENST00000298085 CCDS14404.1 Length = 619 Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 67/149 (44%), Gaps = 2/149 (1%) Query: 194 GGFFPNGAQGVLMSMQMVMFAYLGVEMIGLTAGEAANPQKTIPGAINSVFWRILLFYGGA 253 GGF P G +G+L +A++G + I T EA NPQ++IP I L Y Sbjct: 243 GGFVPFGFEGILRGAATCFYAFVGFDCIATTGEEAQNPQRSIPMGIVISLSVCFLAYFAV 302 Query: 254 LFVILSIYPWNEIGTQGSPFVMTFERLGIKTAAGIINFVVLTAALSSCNGGIFSTGRMLY 313 + + P+ ++ + SP F +G A ++ L A +S G +F R++Y Sbjct: 303 SSALTLMMPYYQLQPE-SPLPEAFLYIGWAPARYVVAVGSLCALSTSLLGSMFPMPRVIY 361 Query: 314 NLAQQGHAPRTFGET-TASGVPRRAILVS 341 +A+ G R T + P A +VS Sbjct: 362 AMAEDGLLFRVLARIHTGTRTPIIATVVS 390 >ENSP00000363417 pep:known-ccds chromosome:NCBI36:X:70062157:70067671:-1 gene:ENSG00000165349 transcript:ENST00000374299 CCDS14404.1 Length = 619 Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 67/149 (44%), Gaps = 2/149 (1%) Query: 194 GGFFPNGAQGVLMSMQMVMFAYLGVEMIGLTAGEAANPQKTIPGAINSVFWRILLFYGGA 253 GGF P G +G+L +A++G + I T EA NPQ++IP I L Y Sbjct: 243 GGFVPFGFEGILRGAATCFYAFVGFDCIATTGEEAQNPQRSIPMGIVISLSVCFLAYFAV 302 Query: 254 LFVILSIYPWNEIGTQGSPFVMTFERLGIKTAAGIINFVVLTAALSSCNGGIFSTGRMLY 313 + + P+ ++ + SP F +G A ++ L A +S G +F R++Y Sbjct: 303 SSALTLMMPYYQLQPE-SPLPEAFLYIGWAPARYVVAVGSLCALSTSLLGSMFPMPRVIY 361 Query: 314 NLAQQGHAPRTFGET-TASGVPRRAILVS 341 +A+ G R T + P A +VS Sbjct: 362 AMAEDGLLFRVLARIHTGTRTPIIATVVS 390 >ENSP00000297524 pep:known-ccds chromosome:NCBI36:8:87295413:87311720:-1 gene:ENSG00000164893 transcript:ENST00000297524 CCDS34917.1 Length = 470 Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 75/350 (21%), Positives = 133/350 (38%), Gaps = 36/350 (10%) Query: 28 IGVGLFLGSANAIKMAGPGIILSYII-GGAVIFVIMRAL--GEMAVHEPVAGSFSRYARN 84 IG G+F+ + + + +S + G I + L E+++ P +G+ + + Sbjct: 27 IGAGIFVSPKGVLAYSCMNVGVSLCVWAGCAILAMTSTLCSAEISISFPCSGAQYYFLKR 86 Query: 85 YLGPLAGYLTGWNYWFLW------LVTCIAEITAVGIYMGIWFPDVPRWIWALAALATMG 138 Y G +L W FL +AE + + P +P+ ALA L +G Sbjct: 87 YFGSTVAFLNLWTSLFLGSGVVAGQALLLAEYSIQPFFPSCSVPKLPKKCLALAMLWIVG 146 Query: 139 SVNLLTVKAYGEFEFWFALIKXXXXXXXXXXXXXXXXXXXXNHGVPMGISNLWAHGGFFP 198 + VK + +++K GV I + F Sbjct: 147 ILTSRGVKEVTWLQIASSVLKVSILSFISLT------------GVVFLIRGKKENVERFQ 194 Query: 199 NGAQGVLMSMQMVM-------FAYLGVEMIGLTAGEAANPQKTIPGAINSVFWRILLFYG 251 N L + ++ FAY G L AGE P+ TIP I + + + Y Sbjct: 195 NAFDAELPDISHLIQAIFQGYFAYSGGACFTLIAGELKKPRTTIPKCIFTALPLVTVVYL 254 Query: 252 GALFVILSIYPWNEIGTQGSPFVMTFERLGIKTAAGIINFVVLTAALSSCNGGIFSTGRM 311 L++ EI + + +T+ + A I+ F + T+ S+ IF + R Sbjct: 255 LVNISYLTVLTPREILSSDA-VAITWADRAFPSLAWIMPFAISTSLFSNLLISIFKSSRP 313 Query: 312 LYNLAQQGHAPRTFGETTASGVPRRAILV-----SMAALLVGV--LLNYL 354 +Y +Q+G P F + P A+L+ S+A +L + L+NY+ Sbjct: 314 IYLASQEGQLPLLFNTLNSHSSPFTAVLLLVTLGSLAIILTSLIDLINYI 363 BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0038[320372] (228 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0039[320372] (266 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0040[320372] (192 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0041[320372] (160 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0042[320372] (295 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0043[320372] (211 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0044[320372] (214 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ENSP00000292147 pep:known-ccds chromosome:NCBI36:19:48702712:487... 76 3e-14 ENSP00000273077 pep:known-ccds chromosome:NCBI36:2:218843457:218... 59 3e-09 ENSP00000258362 pep:known-ccds chromosome:NCBI36:2:218896235:218... 59 3e-09 ENSP00000276590 pep:known-ccds chromosome:NCBI36:8:71712045:7174... 55 5e-08 ENSP00000314776 pep:known-ccds chromosome:NCBI36:5:89789783:8980... 51 8e-07 ENSP00000341952 pep:novel chromosome:NCBI36:16:716937:719457:1 g... 51 1e-06 ENSP00000374353 pep:known-ccds chromosome:NCBI36:16:717511:71945... 50 1e-06 ENSP00000374352 pep:known-ccds chromosome:NCBI36:16:717511:71945... 50 1e-06 ENSP00000374350 pep:known-ccds chromosome:NCBI36:16:717511:71916... 50 2e-06 ENSP00000374351 pep:known-ccds chromosome:NCBI36:16:717511:71916... 50 2e-06 >ENSP00000292147 pep:known-ccds chromosome:NCBI36:19:48702712:48723236:-1 gene:ENSG00000105755 transcript:ENST00000292147 CCDS12622.1 Length = 254 Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 42/105 (40%), Positives = 52/105 (49%), Gaps = 4/105 (3%) Query: 106 EPDRWLADGDTLAFGEETLEVYHCPGHTPGHVVFFSRAHRLAIVGDVLFAGSIGRTDFPR 165 + D + DGD++ FG LE PGHTPG V F H +A GD L GRTDF + Sbjct: 109 QADLHIEDGDSIRFGRFALETRASPGHTPGCVTFVLNDHSMAFTGDALLIRGCGRTDFQQ 168 Query: 166 GNHADLIRSIREKLWPLGDDVTFVPGHG----PVSTFGDERRTNP 206 G L S+ EK++ L D P H VST +ER NP Sbjct: 169 GCAKTLYHSVHEKIFTLPGDCLIYPAHDYHGFTVSTVEEERTLNP 213 >ENSP00000273077 pep:known-ccds chromosome:NCBI36:2:218843457:218919756:1 gene:ENSG00000127838 transcript:ENST00000273077 CCDS2411.1 Length = 385 Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 52/196 (26%), Positives = 80/196 (40%), Gaps = 29/196 (14%) Query: 3 VTLIPVTPFQQNCSLLVCEKTGRAAV-VDPGGDLELIEQEVARQHVQVEKVLLTHGHVDH 61 V ++P+ N S L+ + + AV VDP D ++ + ++ V + +L TH H DH Sbjct: 119 VKVLPIPVLSDNYSYLIIDTQAQLAVAVDPS-DPRAVQASIEKEGVTLVAILCTHKHWDH 177 Query: 62 CAGAKRLAAHYGVPIEGPHEDERFWIEKLPMQSERFGFPAAEAFEPDRWLADGDTLAFGE 121 G + L+ H D R +G P L D ++ G Sbjct: 178 SGGNRDLSRR--------HRDCRV-----------YGSPQDGIPYLTHPLCHQDVVSVGR 218 Query: 122 ETLEVYHCPGHTPGHVVFF-----SRAHRLAIVGDVLFAGSIGRTDFPRGNHADLIRSIR 176 + PGHT GH+V+ + GD+LF GRT GN ++ S+ Sbjct: 219 LQIRALATPGHTQGHLVYLLDGEPYKGPSCLFSGDLLFLSGCGRTF--EGNAETMLSSL- 275 Query: 177 EKLWPLGDDVTFVPGH 192 + + LGDD PGH Sbjct: 276 DTVLGLGDDTLLWPGH 291 >ENSP00000258362 pep:known-ccds chromosome:NCBI36:2:218896235:218919756:1 gene:ENSG00000127838 transcript:ENST00000258362 CCDS2413.1 Length = 361 Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 52/196 (26%), Positives = 80/196 (40%), Gaps = 29/196 (14%) Query: 3 VTLIPVTPFQQNCSLLVCEKTGRAAV-VDPGGDLELIEQEVARQHVQVEKVLLTHGHVDH 61 V ++P+ N S L+ + + AV VDP D ++ + ++ V + +L TH H DH Sbjct: 95 VKVLPIPVLSDNYSYLIIDTQAQLAVAVDPS-DPRAVQASIEKEGVTLVAILCTHKHWDH 153 Query: 62 CAGAKRLAAHYGVPIEGPHEDERFWIEKLPMQSERFGFPAAEAFEPDRWLADGDTLAFGE 121 G + L+ H D R +G P L D ++ G Sbjct: 154 SGGNRDLSRR--------HRDCRV-----------YGSPQDGIPYLTHPLCHQDVVSVGR 194 Query: 122 ETLEVYHCPGHTPGHVVFF-----SRAHRLAIVGDVLFAGSIGRTDFPRGNHADLIRSIR 176 + PGHT GH+V+ + GD+LF GRT GN ++ S+ Sbjct: 195 LQIRALATPGHTQGHLVYLLDGEPYKGPSCLFSGDLLFLSGCGRTF--EGNAETMLSSL- 251 Query: 177 EKLWPLGDDVTFVPGH 192 + + LGDD PGH Sbjct: 252 DTVLGLGDDTLLWPGH 267 >ENSP00000276590 pep:known-ccds chromosome:NCBI36:8:71712045:71743946:-1 gene:ENSG00000147592 transcript:ENST00000276590 CCDS6208.1 Length = 288 Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 14/161 (8%) Query: 35 LELIEQEVARQHVQVEKVLLTHGHVDHCAGAKRLAAHYGVPIEGPHEDERFWIEKLPMQS 94 + ++Q + + ++++++TH H DH G G + + D + I+KLP Sbjct: 56 ISCLKQALTEFNTAIQEIVVTHWHRDHSGGI-------GDICKSINNDTTYCIKKLPRNP 108 Query: 95 ERFGFPAAEAFEPDRWLADGDTLAFGEETLEVYHCPGHTPGHVVFFSRAHRLAIVGDVLF 154 +R + +L DGD + TL V + PGHT H+ GD + Sbjct: 109 QREEI-IGNGEQQYVYLKDGDVIKTEGATLRVLYTPGHTDDHMALLLEEENAIFSGDCIL 167 Query: 155 AGSIGRTDFPRGNHADLIRSIREKLWPLGDDVTFVPGHGPV 195 G T F + D + S++E L + D+ + PGHGPV Sbjct: 168 GE--GTTVFE--DLYDYMNSLKE-LLKIKADIIY-PGHGPV 202 >ENSP00000314776 pep:known-ccds chromosome:NCBI36:5:89789783:89805865:-1 gene:ENSG00000176055 transcript:ENST00000316610 CCDS4067.1 Length = 279 Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 72/163 (44%), Gaps = 20/163 (12%) Query: 55 THGHVDHCAGA---KRLAAHYG---VPIEGPHEDERFWIE-----KLPMQSERFGFPAAE 103 TH H DH G R+A H+ G + + W+ + P R + Sbjct: 82 THVHFDHSGGLYQFDRVAVHHAEAEALARGDNFETVTWLSDSEVVRTPSPGWRARQFRVQ 141 Query: 104 AFEPDRWLADGDTLAFGEETLEVYHCPGHTPGHVVFFSRAHRLAIVGDVLFAGSIGRTDF 163 A +P L DGD + G+ L V H PGH+ G + + ++ GDV++ GS+ D+ Sbjct: 142 AVQPTLILQDGDVINLGDRQLTVMHMPGHSRGSICLHDKDRKILFSGDVVYDGSL--IDW 199 Query: 164 -PRGNHADLIRSIREKLWPLGDD---VTFVPGHGPVSTFGDER 202 P +D + + E+L L D +PGH +TFG ER Sbjct: 200 LPYSRISDYVGTC-ERLIELVDRGLVEKVLPGH--FNTFGAER 239 >ENSP00000341952 pep:novel chromosome:NCBI36:16:716937:719457:1 gene:ENSG00000103253 transcript:ENST00000341413 Length = 291 Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 50/142 (35%), Positives = 62/142 (43%), Gaps = 26/142 (18%) Query: 1 MKVTLIPVTPFQQNCSLLVCEKTGRAAV-VDPGGDLELIEQEVARQHVQVEKVLLTHGHV 59 MKV +IPV + N LV E+ R AV VD L+E V R+ V + VL TH H Sbjct: 1 MKVKVIPV--LEDNYMYLVIEELTREAVAVDVAVPKRLLEI-VGREGVSLTAVLTTHHHW 57 Query: 60 DHCAGAKRLA-AHYGVPIEGPHEDERFWIEKLPMQSERFGFPAAEAFEPDRWLADGDTLA 118 DH G LA G+ + G DER F R LA G+ L Sbjct: 58 DHARGNPELARLRPGLAVLG--ADERI-------------------FSLTRRLAHGEELR 96 Query: 119 FGEETLEVYHCPGHTPGHVVFF 140 FG + PGHT GH+ +F Sbjct: 97 FGAIHVRCLLTPGHTAGHMSYF 118 >ENSP00000374353 pep:known-ccds chromosome:NCBI36:16:717511:719457:1 gene:ENSG00000103253 transcript:ENST00000389703 CCDS32354.1 Length = 282 Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 50/142 (35%), Positives = 62/142 (43%), Gaps = 26/142 (18%) Query: 1 MKVTLIPVTPFQQNCSLLVCEKTGRAAV-VDPGGDLELIEQEVARQHVQVEKVLLTHGHV 59 MKV +IPV + N LV E+ R AV VD L+E V R+ V + VL TH H Sbjct: 1 MKVKVIPV--LEDNYMYLVIEELTREAVAVDVAVPKRLLEI-VGREGVSLTAVLTTHHHW 57 Query: 60 DHCAGAKRLA-AHYGVPIEGPHEDERFWIEKLPMQSERFGFPAAEAFEPDRWLADGDTLA 118 DH G LA G+ + G DER F R LA G+ L Sbjct: 58 DHARGNPELARLRPGLAVLG--ADERI-------------------FSLTRRLAHGEELR 96 Query: 119 FGEETLEVYHCPGHTPGHVVFF 140 FG + PGHT GH+ +F Sbjct: 97 FGAIHVRCLLTPGHTAGHMSYF 118 >ENSP00000374352 pep:known-ccds chromosome:NCBI36:16:717511:719457:1 gene:ENSG00000103253 transcript:ENST00000389702 CCDS32354.1 Length = 282 Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 50/142 (35%), Positives = 62/142 (43%), Gaps = 26/142 (18%) Query: 1 MKVTLIPVTPFQQNCSLLVCEKTGRAAV-VDPGGDLELIEQEVARQHVQVEKVLLTHGHV 59 MKV +IPV + N LV E+ R AV VD L+E V R+ V + VL TH H Sbjct: 1 MKVKVIPV--LEDNYMYLVIEELTREAVAVDVAVPKRLLEI-VGREGVSLTAVLTTHHHW 57 Query: 60 DHCAGAKRLA-AHYGVPIEGPHEDERFWIEKLPMQSERFGFPAAEAFEPDRWLADGDTLA 118 DH G LA G+ + G DER F R LA G+ L Sbjct: 58 DHARGNPELARLRPGLAVLG--ADERI-------------------FSLTRRLAHGEELR 96 Query: 119 FGEETLEVYHCPGHTPGHVVFF 140 FG + PGHT GH+ +F Sbjct: 97 FGAIHVRCLLTPGHTAGHMSYF 118 >ENSP00000374350 pep:known-ccds chromosome:NCBI36:16:717511:719169:1 gene:ENSG00000103253 transcript:ENST00000389700 CCDS32355.1 Length = 290 Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/142 (35%), Positives = 62/142 (43%), Gaps = 26/142 (18%) Query: 1 MKVTLIPVTPFQQNCSLLVCEKTGRAAV-VDPGGDLELIEQEVARQHVQVEKVLLTHGHV 59 MKV +IPV + N LV E+ R AV VD L+E V R+ V + VL TH H Sbjct: 1 MKVKVIPV--LEDNYMYLVIEELTREAVAVDVAVPKRLLEI-VGREGVSLTAVLTTHHHW 57 Query: 60 DHCAGAKRLA-AHYGVPIEGPHEDERFWIEKLPMQSERFGFPAAEAFEPDRWLADGDTLA 118 DH G LA G+ + G DER F R LA G+ L Sbjct: 58 DHARGNPELARLRPGLAVLG--ADERI-------------------FSLTRRLAHGEELR 96 Query: 119 FGEETLEVYHCPGHTPGHVVFF 140 FG + PGHT GH+ +F Sbjct: 97 FGAIHVRCLLTPGHTAGHMSYF 118 >ENSP00000374351 pep:known-ccds chromosome:NCBI36:16:717511:719169:1 gene:ENSG00000103253 transcript:ENST00000389701 CCDS32355.1 Length = 290 Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/142 (35%), Positives = 62/142 (43%), Gaps = 26/142 (18%) Query: 1 MKVTLIPVTPFQQNCSLLVCEKTGRAAV-VDPGGDLELIEQEVARQHVQVEKVLLTHGHV 59 MKV +IPV + N LV E+ R AV VD L+E V R+ V + VL TH H Sbjct: 1 MKVKVIPV--LEDNYMYLVIEELTREAVAVDVAVPKRLLEI-VGREGVSLTAVLTTHHHW 57 Query: 60 DHCAGAKRLA-AHYGVPIEGPHEDERFWIEKLPMQSERFGFPAAEAFEPDRWLADGDTLA 118 DH G LA G+ + G DER F R LA G+ L Sbjct: 58 DHARGNPELARLRPGLAVLG--ADERI-------------------FSLTRRLAHGEELR 96 Query: 119 FGEETLEVYHCPGHTPGHVVFF 140 FG + PGHT GH+ +F Sbjct: 97 FGAIHVRCLLTPGHTAGHMSYF 118 BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0045[320372] (458 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0046[320372] (152 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0047[320372] (396 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0048[320372] (125 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0049[320372] (288 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0050[320372] (372 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0051[320372] (380 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0052[320372] (366 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0053[320372] (230 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0054[320372] (496 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ENSP00000364035 pep:known-ccds chromosome:NCBI36:X:57329864:5753... 80 4e-15 ENSP00000243167 pep:known-ccds chromosome:NCBI36:1:46632524:4665... 54 5e-07 >ENSP00000364035 pep:known-ccds chromosome:NCBI36:X:57329864:57532354:1 gene:ENSG00000165591 transcript:ENST00000374900 CCDS14375.1 Length = 532 Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 61/199 (30%), Positives = 89/199 (44%), Gaps = 17/199 (8%) Query: 15 LAQLVAQREVSARELLDAAIGRAQALNPAINAIVLNDYAAARERAAS------------G 62 LA+L+ QR+V +++ A I R + +NP IN IV + A + A + Sbjct: 56 LAKLIRQRKVKCIDVVQAYINRIKDVNPMINGIVKYRFEEAMKEAHAVDQKLAEKQEDEA 115 Query: 63 TLAG--PLAGVPYLVKDLGSAVAGLPLSLGSRHYRHHVPAEDSPLIVRTKAAGLNIFGKT 120 TL P GVP VK+ + G+P S G + R + D+ ++ K AG G T Sbjct: 116 TLENKWPFLGVPLTVKE-AFQLQGMPNSSGLMNRRDAIAKTDATVVALLKGAGAIPLGIT 174 Query: 121 NTPELGQMPYTESALLGVCRNPWNLDHTPXXXXXXXXXXXXXXIVPLAHASDGGGSIRIP 180 N EL + + + G NP++L H + SD GGSIR+P Sbjct: 175 NCSELCMWYESSNKIYGRSNNPYDLQHIVGGSSGGEGCTLAAACSVIGVGSDIGGSIRMP 234 Query: 181 ASCCGLFGFKPSRDPALTP 199 A G+FG KPS P + P Sbjct: 235 AFFNGIFGHKPS--PGVVP 251 >ENSP00000243167 pep:known-ccds chromosome:NCBI36:1:46632524:46652104:1 gene:ENSG00000117480 transcript:ENST00000243167 CCDS535.1 Length = 579 Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 58/206 (28%), Positives = 88/206 (42%), Gaps = 15/206 (7%) Query: 17 QLVAQREVSARELLDAAIGRAQALNPAINAIVLNDYAAARERAASGTLAGPLAGVPYLVK 76 Q + RE++ +L +G+A +N N + + A + + G L GVP +K Sbjct: 84 QKLHSRELAPEAVLFTYVGKAWEVNKGTNCVT-SYLADCETQLSQAPRQGLLYGVPVSLK 142 Query: 77 DLGS-----AVAGLPLSLGSRHYRHHVPAE-DSPLIVRTKAAGLNIFGKTNTPELGQMPY 130 + + + GL L+ G VPAE DS ++ K G F TN P+ Sbjct: 143 ECFTYKGQDSTLGLSLNEG-------VPAECDSVVVHVLKLQGAVPFVHTNVPQSMFSYD 195 Query: 131 TESALLGVCRNPWNLDHTPXXXXXXXXXXXXXXIVPLAHASDGGGSIRIPASCCGLFGFK 190 + L G NPW +P PL +D GGSIR P+S CG+ G K Sbjct: 196 CSNPLFGQTVNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSSFCGICGLK 255 Query: 191 PSRDPALTPWPVPGEIVVEHAVSRSV 216 P+ + L+ + G + + AV SV Sbjct: 256 PTGN-RLSKSGLKGCVYGQEAVRLSV 280 BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0055[320372] (276 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ENSP00000365775 pep:known-ccds chromosome:NCBI36:1:11769247:1178... 192 4e-49 ENSP00000365777 pep:known-ccds chromosome:NCBI36:1:11768367:1178... 192 4e-49 ENSP00000365767 pep:known chromosome:NCBI36:1:11773324:11786158:... 192 5e-49 ENSP00000365770 pep:known chromosome:NCBI36:1:11770938:11788057:... 192 5e-49 >ENSP00000365775 pep:known-ccds chromosome:NCBI36:1:11769247:11788702:-1 gene:ENSG00000177000 transcript:ENST00000376590 CCDS137.1 Length = 656 Score = 192 bits (487), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 109/280 (38%), Positives = 162/280 (57%), Gaps = 10/280 (3%) Query: 6 LSFEFFPPKTAEGVDKLRATRAQLAPLKPKFVSVTF---GAGGSTQQGTLDTVLD--MQK 60 S EFFPP+TAEG L + ++A P ++ VT+ G GS ++ + + + Sbjct: 60 FSLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWHPAGDPGSDKETSSMMIASTAVNY 119 Query: 61 AGLEAAPHLSCIGSSKDSLRAILDQYRSHGIRHIVALRGDLPSG---MGEVGELRYASEL 117 GLE H++C + + L + + G+++I+ALRGD P G E G YA +L Sbjct: 120 CGLETILHMTCCRQRLEEITGHLHKAKQLGLKNIMALRGD-PIGDQWEEEEGGFNYAVDL 178 Query: 118 VSFIRAEHGDWFRIEVAAYPEYHPQARSPKADLENFARKVKAGANAAITQYFYNADAYFR 177 V IR+E GD+F I VA YP+ HP+A S +ADL++ KV AGA+ ITQ F+ AD +FR Sbjct: 179 VKHIRSEFGDYFDICVAGYPKGHPEAGSFEADLKHLKEKVSAGADFIITQLFFEADTFFR 238 Query: 178 FVDDAAKLGVDVPVVPGIMPITNFSQLMRFSEMCGAEVPRWVARRLESFGDDKDSIRAFG 237 FV +G+ P+VPGI PI + L + ++ EVP+ + +E D+ +IR +G Sbjct: 239 FVKACTDMGITCPIVPGIFPIQGYHSLRQLVKLSKLEVPQEIKDVIEPIKDNDAAIRNYG 298 Query: 238 ADVVTGLCRRLIDAG-VPGLHFYTLNGAAATKTVCERLGL 276 ++ LC+ L+ +G VPGLHFYTLN AT V +RLG+ Sbjct: 299 IELAVSLCQELLASGLVPGLHFYTLNREMATTEVLKRLGM 338 >ENSP00000365777 pep:known-ccds chromosome:NCBI36:1:11768367:11785889:-1 gene:ENSG00000177000 transcript:ENST00000376592 CCDS137.1 Length = 656 Score = 192 bits (487), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 109/280 (38%), Positives = 162/280 (57%), Gaps = 10/280 (3%) Query: 6 LSFEFFPPKTAEGVDKLRATRAQLAPLKPKFVSVTF---GAGGSTQQGTLDTVLD--MQK 60 S EFFPP+TAEG L + ++A P ++ VT+ G GS ++ + + + Sbjct: 60 FSLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWHPAGDPGSDKETSSMMIASTAVNY 119 Query: 61 AGLEAAPHLSCIGSSKDSLRAILDQYRSHGIRHIVALRGDLPSG---MGEVGELRYASEL 117 GLE H++C + + L + + G+++I+ALRGD P G E G YA +L Sbjct: 120 CGLETILHMTCCRQRLEEITGHLHKAKQLGLKNIMALRGD-PIGDQWEEEEGGFNYAVDL 178 Query: 118 VSFIRAEHGDWFRIEVAAYPEYHPQARSPKADLENFARKVKAGANAAITQYFYNADAYFR 177 V IR+E GD+F I VA YP+ HP+A S +ADL++ KV AGA+ ITQ F+ AD +FR Sbjct: 179 VKHIRSEFGDYFDICVAGYPKGHPEAGSFEADLKHLKEKVSAGADFIITQLFFEADTFFR 238 Query: 178 FVDDAAKLGVDVPVVPGIMPITNFSQLMRFSEMCGAEVPRWVARRLESFGDDKDSIRAFG 237 FV +G+ P+VPGI PI + L + ++ EVP+ + +E D+ +IR +G Sbjct: 239 FVKACTDMGITCPIVPGIFPIQGYHSLRQLVKLSKLEVPQEIKDVIEPIKDNDAAIRNYG 298 Query: 238 ADVVTGLCRRLIDAG-VPGLHFYTLNGAAATKTVCERLGL 276 ++ LC+ L+ +G VPGLHFYTLN AT V +RLG+ Sbjct: 299 IELAVSLCQELLASGLVPGLHFYTLNREMATTEVLKRLGM 338 >ENSP00000365767 pep:known chromosome:NCBI36:1:11773324:11786158:-1 gene:ENSG00000177000 transcript:ENST00000376583 Length = 697 Score = 192 bits (487), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 109/280 (38%), Positives = 162/280 (57%), Gaps = 10/280 (3%) Query: 6 LSFEFFPPKTAEGVDKLRATRAQLAPLKPKFVSVTF---GAGGSTQQGTLDTVLD--MQK 60 S EFFPP+TAEG L + ++A P ++ VT+ G GS ++ + + + Sbjct: 101 FSLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWHPAGDPGSDKETSSMMIASTAVNY 160 Query: 61 AGLEAAPHLSCIGSSKDSLRAILDQYRSHGIRHIVALRGDLPSG---MGEVGELRYASEL 117 GLE H++C + + L + + G+++I+ALRGD P G E G YA +L Sbjct: 161 CGLETILHMTCCRQRLEEITGHLHKAKQLGLKNIMALRGD-PIGDQWEEEEGGFNYAVDL 219 Query: 118 VSFIRAEHGDWFRIEVAAYPEYHPQARSPKADLENFARKVKAGANAAITQYFYNADAYFR 177 V IR+E GD+F I VA YP+ HP+A S +ADL++ KV AGA+ ITQ F+ AD +FR Sbjct: 220 VKHIRSEFGDYFDICVAGYPKGHPEAGSFEADLKHLKEKVSAGADFIITQLFFEADTFFR 279 Query: 178 FVDDAAKLGVDVPVVPGIMPITNFSQLMRFSEMCGAEVPRWVARRLESFGDDKDSIRAFG 237 FV +G+ P+VPGI PI + L + ++ EVP+ + +E D+ +IR +G Sbjct: 280 FVKACTDMGITCPIVPGIFPIQGYHSLRQLVKLSKLEVPQEIKDVIEPIKDNDAAIRNYG 339 Query: 238 ADVVTGLCRRLIDAG-VPGLHFYTLNGAAATKTVCERLGL 276 ++ LC+ L+ +G VPGLHFYTLN AT V +RLG+ Sbjct: 340 IELAVSLCQELLASGLVPGLHFYTLNREMATTEVLKRLGM 379 >ENSP00000365770 pep:known chromosome:NCBI36:1:11770938:11788057:-1 gene:ENSG00000177000 transcript:ENST00000376585 Length = 697 Score = 192 bits (487), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 109/280 (38%), Positives = 162/280 (57%), Gaps = 10/280 (3%) Query: 6 LSFEFFPPKTAEGVDKLRATRAQLAPLKPKFVSVTF---GAGGSTQQGTLDTVLD--MQK 60 S EFFPP+TAEG L + ++A P ++ VT+ G GS ++ + + + Sbjct: 101 FSLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWHPAGDPGSDKETSSMMIASTAVNY 160 Query: 61 AGLEAAPHLSCIGSSKDSLRAILDQYRSHGIRHIVALRGDLPSG---MGEVGELRYASEL 117 GLE H++C + + L + + G+++I+ALRGD P G E G YA +L Sbjct: 161 CGLETILHMTCCRQRLEEITGHLHKAKQLGLKNIMALRGD-PIGDQWEEEEGGFNYAVDL 219 Query: 118 VSFIRAEHGDWFRIEVAAYPEYHPQARSPKADLENFARKVKAGANAAITQYFYNADAYFR 177 V IR+E GD+F I VA YP+ HP+A S +ADL++ KV AGA+ ITQ F+ AD +FR Sbjct: 220 VKHIRSEFGDYFDICVAGYPKGHPEAGSFEADLKHLKEKVSAGADFIITQLFFEADTFFR 279 Query: 178 FVDDAAKLGVDVPVVPGIMPITNFSQLMRFSEMCGAEVPRWVARRLESFGDDKDSIRAFG 237 FV +G+ P+VPGI PI + L + ++ EVP+ + +E D+ +IR +G Sbjct: 280 FVKACTDMGITCPIVPGIFPIQGYHSLRQLVKLSKLEVPQEIKDVIEPIKDNDAAIRNYG 339 Query: 238 ADVVTGLCRRLIDAG-VPGLHFYTLNGAAATKTVCERLGL 276 ++ LC+ L+ +G VPGLHFYTLN AT V +RLG+ Sbjct: 340 IELAVSLCQELLASGLVPGLHFYTLNREMATTEVLKRLGM 379 BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0056[320372] (117 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0057[320372] (473 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ENSP00000217426 pep:known-ccds chromosome:NCBI36:20:32331737:323... 527 e-149 ENSP00000315931 pep:known-ccds chromosome:NCBI36:7:128652100:128... 472 e-133 ENSP00000358814 pep:known-ccds chromosome:NCBI36:1:110328831:110... 458 e-129 ENSP00000352092 pep:known chromosome:NCBI36:1:110348276:11036653... 457 e-128 ENSP00000367886 pep:novel chromosome:NCBI36:7:128804617:12885728... 448 e-126 ENSP00000364079 pep:novel chromosome:NCBI36:20:32331737:32354784... 348 1e-95 >ENSP00000217426 pep:known-ccds chromosome:NCBI36:20:32331737:32354811:-1 gene:ENSG00000101444 transcript:ENST00000217426 CCDS13233.1 Length = 432 Score = 527 bits (1357), Expect = e-149, Method: Compositional matrix adjust. Identities = 276/462 (59%), Positives = 331/462 (71%), Gaps = 38/462 (8%) Query: 14 YVVADIALAGWGRKELNIAETEMPGLVQIRDEYKAQQPLKGARIAGSLHMTIQTGVLIET 73 Y VADI LA WGRK L+IAE EMPGL+++R+ Y A +PLKGARIAG LHMT++T VLIET Sbjct: 7 YKVADIGLAAWGRKALDIAENEMPGLMRMRERYSASKPLKGARIAGCLHMTVETAVLIET 66 Query: 74 LKALGADVRWASCNIFSTQDHAAAAIVEAGTPVFAFKGESLDEYWEFSHRIFEWPNGEFA 133 L LGA+V+W+SCNIFSTQDHAAAAI +AG PV+A+KGE+ +EY + + +G Sbjct: 67 LVTLGAEVQWSSCNIFSTQDHAAAAIAKAGIPVYAWKGETDEEYLWCIEQTLYFKDGPL- 125 Query: 134 NMILDDGGDATLLLILGSKAEKDRSVIARPTNEEEVALFKSIERHLEIDGSWYSKRLAHI 193 NMILDDGGD T L+ H + Y + L I Sbjct: 126 NMILDDGGDLTNLI------------------------------HTK-----YPQLLPGI 150 Query: 194 KGVTEETTTGVHRLYQMEKDGRLPFPAFNVNDSVTKSKFDNLYGCRESLVDGIKRATDVM 253 +G++EETTTGVH LY+M +G L PA NVNDSVTKSKFDNLYGCRESL+DGIKRATDVM Sbjct: 151 RGISEETTTGVHNLYKMMANGILKVPAINVNDSVTKSKFDNLYGCRESLIDGIKRATDVM 210 Query: 254 IAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRVVTMEYAADKAD 313 IAGK+AVVAGYGDVGKGCAQ+LRG GA V +TEIDPI ALQAAMEGY V TM+ A + + Sbjct: 211 IAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACQEGN 270 Query: 314 IFVTATGNYHVINHDHMKAMRHNAIVCNIGHFDSEIDVASTRQYQWE--NIKPQVDHIIF 371 IFVT TG +I H + M+ +AIVCNIGHFD EIDV + E NIKPQVD Sbjct: 271 IFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRYRL 330 Query: 372 PDGKRVILLAEGRLVNLGCATGHPSFVMSNSFTNQTLAQIELFTRGGEYANKVYVLPKHL 431 +G+R+ILLAEGRLVNLGCA GHPSFVMSNSFTNQ +AQIEL+T +Y V+ LPK L Sbjct: 331 KNGRRIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVMAQIELWTHPDKYPVGVHFLPKKL 390 Query: 432 DEKVARLHLARIGAQLSELSDDQAAYIGVSKAGPFKPDHYRY 473 DE VA HL ++ +L++L++ QA Y+G+S GPFKPDHYRY Sbjct: 391 DEAVAEAHLGKLNVKLTKLTEKQAQYLGMSCDGPFKPDHYRY 432 >ENSP00000315931 pep:known-ccds chromosome:NCBI36:7:128652100:128857287:1 gene:ENSG00000158467 transcript:ENST00000325006 CCDS5812.1 Length = 611 Score = 472 bits (1214), Expect = e-133, Method: Compositional matrix adjust. Identities = 234/470 (49%), Positives = 312/470 (66%), Gaps = 40/470 (8%) Query: 7 DSHSAQDYVVADIALAGWGRKELNIAETEMPGLVQIRDEYKAQQPLKGARIAGSLHMTIQ 66 +S + D+ V +I A +GR+E+ IAE EMP L+ +R + ++PL GA+I G H+T Q Sbjct: 179 NSKGSSDFCVKNIKQAEFGRREIEIAEQEMPALMALRKRAQGEKPLAGAKIVGCTHITAQ 238 Query: 67 TGVLIETLKALGADVRWASCNIFSTQDHAAAAIVEAGTPVFAFKGESLDEYWEFSHRIFE 126 T VL+ETL ALGA RWA+CNI+ST + AAA+ E+G PVFA+KGES D++W R Sbjct: 239 TAVLMETLGALGAQCRWAACNIYSTLNEVAAALAESGFPVFAWKGESEDDFWWCIDRCVN 298 Query: 127 WPNGEFANMILDDGGDATLLLILGSKAEKDRSVIARPTNEEEVALFKSIERHLEIDGSWY 186 G NMILDDGGD T + +K Y Sbjct: 299 V-EGWQPNMILDDGGDLTHWI------------------------YKK-----------Y 322 Query: 187 SKRLAHIKGVTEETTTGVHRLYQMEKDGRLPFPAFNVNDSVTKSKFDNLYGCRESLVDGI 246 IKG+ EE+ TGVHRLYQ+ K G+L PA NVNDSVTK KFDNLY CRES++DG+ Sbjct: 323 PNMFKKIKGIVEESVTGVHRLYQLSKAGKLCVPAMNVNDSVTKQKFDNLYCCRESILDGL 382 Query: 247 KRATDVMIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRVVTME 306 KR TD+M GK VV GYG+VGKGC +L+ +G+ V+VTEIDPICALQA M+G+R+V + Sbjct: 383 KRTTDMMFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRLVKLN 442 Query: 307 YAADKADIFVTATGNYHVINHDHMKAMRHNAIVCNIGHFDSEIDVASTR--QYQWENIKP 364 + DI +T TGN +V+ +H+ M+++ IVCN+GH ++EIDVAS R + WE ++ Sbjct: 443 EVIRQVDIVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDVASLRTPELTWERVRS 502 Query: 365 QVDHIIFPDGKRVILLAEGRLVNLGCATGHPSFVMSNSFTNQTLAQIELFTRG-GEYANK 423 QVDH+I+PDGKR++LLAEGRL+NL C+T P+FV+S + T Q LA IEL+ G Y Sbjct: 503 QVDHVIWPDGKRIVLLAEGRLLNLSCST-VPTFVLSITATTQALALIELYNAPEGRYKQD 561 Query: 424 VYVLPKHLDEKVARLHLARIGAQLSELSDDQAAYIGVSKAGPFKPDHYRY 473 VY+LPK +DE VA LHL A L+EL+D+QA Y+G++K GPFKP++YRY Sbjct: 562 VYLLPKKMDEYVASLHLPTFDAHLTELTDEQAKYLGLNKNGPFKPNYYRY 611 >ENSP00000358814 pep:known-ccds chromosome:NCBI36:1:110328831:110367880:1 gene:ENSG00000168710 transcript:ENST00000369799 CCDS818.1 Length = 530 Score = 458 bits (1178), Expect = e-129, Method: Compositional matrix adjust. Identities = 235/470 (50%), Positives = 312/470 (66%), Gaps = 40/470 (8%) Query: 7 DSHSAQDYVVADIALAGWGRKELNIAETEMPGLVQIRDEYKAQQPLKGARIAGSLHMTIQ 66 +S + ++ V +I A +GR+E+ IAE +M L+ +R + ++PL GA+I G H+T Q Sbjct: 98 NSKGSSNFCVKNIKQAEFGRREIEIAEQDMSALISLRKRAQGEKPLAGAKIVGCTHITAQ 157 Query: 67 TGVLIETLKALGADVRWASCNIFSTQDHAAAAIVEAGTPVFAFKGESLDEYWEFSHRIFE 126 T VLIETL ALGA RW++CNI+STQ+ AAA+ EAG VFA+KGES D++W R Sbjct: 158 TAVLIETLCALGAQCRWSACNIYSTQNEVAAALAEAGVAVFAWKGESEDDFWWCIDRCVN 217 Query: 127 WPNGEFANMILDDGGDATLLLILGSKAEKDRSVIARPTNEEEVALFKSIERHLEIDGSWY 186 +G ANMILDDGGD T + +K Y Sbjct: 218 M-DGWQANMILDDGGDLTHWV------------------------YKK-----------Y 241 Query: 187 SKRLAHIKGVTEETTTGVHRLYQMEKDGRLPFPAFNVNDSVTKSKFDNLYGCRESLVDGI 246 I+G+ EE+ TGVHRLYQ+ K G+L PA NVNDSVTK KFDNLY CRES++DG+ Sbjct: 242 PNVFKKIRGIVEESVTGVHRLYQLSKAGKLCVPAMNVNDSVTKQKFDNLYCCRESILDGL 301 Query: 247 KRATDVMIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRVVTME 306 KR TDVM GK VV GYG+VGKGC +L+ LGA V++TEIDPICALQA M+G+RVV + Sbjct: 302 KRTTDVMFGGKQVVVCGYGEVGKGCCAALKALGAIVYITEIDPICALQACMDGFRVVKLN 361 Query: 307 YAADKADIFVTATGNYHVINHDHMKAMRHNAIVCNIGHFDSEIDVASTR--QYQWENIKP 364 + D+ +T TGN +V+ +H+ M+++ IVCN+GH ++EIDV S R + WE ++ Sbjct: 362 EVIRQVDVVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDVTSLRTPELTWERVRS 421 Query: 365 QVDHIIFPDGKRVILLAEGRLVNLGCATGHPSFVMSNSFTNQTLAQIELFTRG-GEYANK 423 QVDH+I+PDGKRV+LLAEGRL+NL C+T P+FV+S + T Q LA IEL+ G Y Sbjct: 422 QVDHVIWPDGKRVVLLAEGRLLNLSCST-VPTFVLSITATTQALALIELYNAPEGRYKQD 480 Query: 424 VYVLPKHLDEKVARLHLARIGAQLSELSDDQAAYIGVSKAGPFKPDHYRY 473 VY+LPK +DE VA LHL A L+EL+DDQA Y+G++K GPFKP++YRY Sbjct: 481 VYLLPKKMDEYVASLHLPSFDAHLTELTDDQAKYLGLNKNGPFKPNYYRY 530 >ENSP00000352092 pep:known chromosome:NCBI36:1:110348276:110366534:1 gene:ENSG00000168710 transcript:ENST00000359172 Length = 483 Score = 457 bits (1176), Expect = e-128, Method: Compositional matrix adjust. Identities = 235/470 (50%), Positives = 312/470 (66%), Gaps = 40/470 (8%) Query: 7 DSHSAQDYVVADIALAGWGRKELNIAETEMPGLVQIRDEYKAQQPLKGARIAGSLHMTIQ 66 +S + ++ V +I A +GR+E+ IAE +M L+ +R + ++PL GA+I G H+T Q Sbjct: 51 NSKGSSNFCVKNIKQAEFGRREIEIAEQDMSALISLRKRAQGEKPLAGAKIVGCTHITAQ 110 Query: 67 TGVLIETLKALGADVRWASCNIFSTQDHAAAAIVEAGTPVFAFKGESLDEYWEFSHRIFE 126 T VLIETL ALGA RW++CNI+STQ+ AAA+ EAG VFA+KGES D++W R Sbjct: 111 TAVLIETLCALGAQCRWSACNIYSTQNEVAAALAEAGVAVFAWKGESEDDFWWCIDRCVN 170 Query: 127 WPNGEFANMILDDGGDATLLLILGSKAEKDRSVIARPTNEEEVALFKSIERHLEIDGSWY 186 +G ANMILDDGGD T + +K Y Sbjct: 171 M-DGWQANMILDDGGDLTHWV------------------------YKK-----------Y 194 Query: 187 SKRLAHIKGVTEETTTGVHRLYQMEKDGRLPFPAFNVNDSVTKSKFDNLYGCRESLVDGI 246 I+G+ EE+ TGVHRLYQ+ K G+L PA NVNDSVTK KFDNLY CRES++DG+ Sbjct: 195 PNVFKKIRGIVEESVTGVHRLYQLSKAGKLCVPAMNVNDSVTKQKFDNLYCCRESILDGL 254 Query: 247 KRATDVMIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRVVTME 306 KR TDVM GK VV GYG+VGKGC +L+ LGA V++TEIDPICALQA M+G+RVV + Sbjct: 255 KRTTDVMFGGKQVVVCGYGEVGKGCCAALKALGAIVYITEIDPICALQACMDGFRVVKLN 314 Query: 307 YAADKADIFVTATGNYHVINHDHMKAMRHNAIVCNIGHFDSEIDVASTR--QYQWENIKP 364 + D+ +T TGN +V+ +H+ M+++ IVCN+GH ++EIDV S R + WE ++ Sbjct: 315 EVIRQVDVVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDVTSLRTPELTWERVRS 374 Query: 365 QVDHIIFPDGKRVILLAEGRLVNLGCATGHPSFVMSNSFTNQTLAQIELFTRG-GEYANK 423 QVDH+I+PDGKRV+LLAEGRL+NL C+T P+FV+S + T Q LA IEL+ G Y Sbjct: 375 QVDHVIWPDGKRVVLLAEGRLLNLSCST-VPTFVLSITATTQALALIELYNAPEGRYKQD 433 Query: 424 VYVLPKHLDEKVARLHLARIGAQLSELSDDQAAYIGVSKAGPFKPDHYRY 473 VY+LPK +DE VA LHL A L+EL+DDQA Y+G++K GPFKP++YRY Sbjct: 434 VYLLPKKMDEYVASLHLPSFDAHLTELTDDQAKYLGLNKNGPFKPNYYRY 483 >ENSP00000367886 pep:novel chromosome:NCBI36:7:128804617:128857287:1 gene:ENSG00000158467 transcript:ENST00000378622 Length = 404 Score = 448 bits (1153), Expect = e-126, Method: Compositional matrix adjust. Identities = 222/441 (50%), Positives = 293/441 (66%), Gaps = 40/441 (9%) Query: 36 MPGLVQIRDEYKAQQPLKGARIAGSLHMTIQTGVLIETLKALGADVRWASCNIFSTQDHA 95 MP L+ +R + ++PL GA+I G H+T QT VL+ETL ALGA RWA+CNI+ST + Sbjct: 1 MPALMALRKRAQGEKPLAGAKIVGCTHITAQTAVLMETLGALGAQCRWAACNIYSTLNEV 60 Query: 96 AAAIVEAGTPVFAFKGESLDEYWEFSHRIFEWPNGEFANMILDDGGDATLLLILGSKAEK 155 AAA+ E+G PVFA+KGES D++W R G NMILDDGGD T + Sbjct: 61 AAALAESGFPVFAWKGESEDDFWWCIDRCVN-VEGWQPNMILDDGGDLTHWI-------- 111 Query: 156 DRSVIARPTNEEEVALFKSIERHLEIDGSWYSKRLAHIKGVTEETTTGVHRLYQMEKDGR 215 +K Y IKG+ EE+ TGVHRLYQ+ K G+ Sbjct: 112 ----------------YKK-----------YPNMFKKIKGIVEESVTGVHRLYQLSKAGK 144 Query: 216 LPFPAFNVNDSVTKSKFDNLYGCRESLVDGIKRATDVMIAGKIAVVAGYGDVGKGCAQSL 275 L PA NVNDSVTK KFDNLY CRES++DG+KR TD+M GK VV GYG+VGKGC +L Sbjct: 145 LCVPAMNVNDSVTKQKFDNLYCCRESILDGLKRTTDMMFGGKQVVVCGYGEVGKGCCAAL 204 Query: 276 RGLGATVWVTEIDPICALQAAMEGYRVVTMEYAADKADIFVTATGNYHVINHDHMKAMRH 335 + +G+ V+VTEIDPICALQA M+G+R+V + + DI +T TGN +V+ +H+ M++ Sbjct: 205 KAMGSIVYVTEIDPICALQACMDGFRLVKLNEVIRQVDIVITCTGNKNVVTREHLDRMKN 264 Query: 336 NAIVCNIGHFDSEIDVASTR--QYQWENIKPQVDHIIFPDGKRVILLAEGRLVNLGCATG 393 + IVCN+GH ++EIDVAS R + WE ++ QVDH+I+PDGKR++LLAEGRL+NL C+T Sbjct: 265 SCIVCNMGHSNTEIDVASLRTPELTWERVRSQVDHVIWPDGKRIVLLAEGRLLNLSCST- 323 Query: 394 HPSFVMSNSFTNQTLAQIELFTRG-GEYANKVYVLPKHLDEKVARLHLARIGAQLSELSD 452 P+FV+S + T Q LA IEL+ G Y VY+LPK +DE VA LHL A L+EL+D Sbjct: 324 VPTFVLSITATTQALALIELYNAPEGRYKQDVYLLPKKMDEYVASLHLPTFDAHLTELTD 383 Query: 453 DQAAYIGVSKAGPFKPDHYRY 473 +QA Y+G++K GPFKP++YRY Sbjct: 384 EQAKYLGLNKNGPFKPNYYRY 404 >ENSP00000364079 pep:novel chromosome:NCBI36:20:32331737:32354784:-1 gene:ENSG00000101444 transcript:ENST00000331585 Length = 285 Score = 348 bits (892), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 187/312 (59%), Positives = 222/312 (71%), Gaps = 36/312 (11%) Query: 14 YVVADIALAGWGRKELNIAETEMPGLVQIRDEYKAQQPLKGARIAGSLHMTIQTGVLIET 73 Y VADI LA WGRK L+IAE EMPGL+++R+ Y A +PLKGARIAG LHMT++T VLIET Sbjct: 7 YKVADIGLAAWGRKALDIAENEMPGLMRMRERYSASKPLKGARIAGCLHMTVETAVLIET 66 Query: 74 LKALGADVRWASCNIFSTQDHAAAAIVEAGTPVFAFKGESLDEYWEFSHRIFEWPNGEFA 133 L LGA+V+W+SCNIFSTQDHAAAAI +AG PV+A+KGE+ +EY + + +G Sbjct: 67 LVTLGAEVQWSSCNIFSTQDHAAAAIAKAGIPVYAWKGETDEEYLWCIEQTLYFKDGPL- 125 Query: 134 NMILDDGGDATLLLILGSKAEKDRSVIARPTNEEEVALFKSIERHLEIDGSWYSKRLAHI 193 NMILDDGGD T L+ H + Y + L I Sbjct: 126 NMILDDGGDLTNLI------------------------------HTK-----YPQLLPGI 150 Query: 194 KGVTEETTTGVHRLYQMEKDGRLPFPAFNVNDSVTKSKFDNLYGCRESLVDGIKRATDVM 253 +G++EETTTGVH LY+M +G L PA NVNDSVTKSKFDNLYGCRESL+DGIKRATDVM Sbjct: 151 RGISEETTTGVHNLYKMMANGILKVPAINVNDSVTKSKFDNLYGCRESLIDGIKRATDVM 210 Query: 254 IAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRVVTMEYAADKAD 313 IAGK+AVVAGYGDVGKGCAQ+LRG GA V +TEIDPI ALQAAMEGY V TM+ A + + Sbjct: 211 IAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACQEGN 270 Query: 314 IFVTATGNYHVI 325 IFVT TG +I Sbjct: 271 IFVTTTGCIDII 282 BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0058[320372] (243 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0059[320372] (540 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0060[320372] (270 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0061[320372] (583 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ENSP00000216774 pep:known-ccds chromosome:NCBI36:14:34521988:345... 57 5e-08 ENSP00000374469 pep:known-ccds chromosome:NCBI36:11:125639021:12... 53 1e-06 ENSP00000374470 pep:known-ccds chromosome:NCBI36:11:125639021:12... 53 1e-06 ENSP00000328023 pep:novel chromosome:NCBI36:11:125638052:1256439... 53 1e-06 >ENSP00000216774 pep:known-ccds chromosome:NCBI36:14:34521988:34568522:1 gene:ENSG00000100883 transcript:ENST00000216774 CCDS9652.1 Length = 504 Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 49/202 (24%), Positives = 95/202 (47%), Gaps = 17/202 (8%) Query: 348 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH 407 V +G G GKTTT +KLA + K L+ D++R G +QL+ +P + Sbjct: 103 VIMFVGLQGSGKTTTCSKLAYYYQRK--GWKTCLICADTFRAGAFDQLKQNATKARIPFY 160 Query: 408 AVKDGGDLQLALAE----LRNKH--MVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLL 461 D + +E +N++ ++++DT G +++ ++ +++ + A P + + Sbjct: 161 GSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYV 220 Query: 462 LNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASNLGGVLDTVIRYKLPVH 521 ++A S G +A++ D+A I+TKLD + GG L V K P+ Sbjct: 221 MDA-SIGQACEAQAKAFKDKV--------DVASVIVTKLDGHAKGGGALSAVAATKSPII 271 Query: 522 YVSTGQKVPENLYVATKKFLLK 543 ++ TG+ + + T+ F+ K Sbjct: 272 FIGTGEHIDDFEPFKTQPFISK 293 >ENSP00000374469 pep:known-ccds chromosome:NCBI36:11:125639021:125643909:-1 gene:ENSG00000182934 transcript:ENST00000389819 CCDS31717.1 Length = 638 Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 59/205 (28%), Positives = 92/205 (44%), Gaps = 23/205 (11%) Query: 344 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG 403 +R V G GVGK+T AK++ ++ G S V + D++R G EQLR + L Sbjct: 416 QRPYVVTFCGVNGVGKSTNLAKISF-WLLENGFS-VLIAACDTFRAGAVEQLRTHTRRLS 473 Query: 404 VPVHAVKDGGD--LQL---------------ALAELRNK--HMVLIDTIGMSQRDRTVSD 444 K GG +QL A+A RN+ +VL+DT G Q + + Sbjct: 474 ALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMT 533 Query: 445 QIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLA-GCILTKLDEA 503 +A L +TP L + A + ++++V+ R+ A A P L G +LTK D Sbjct: 534 ALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTI 593 Query: 504 SN-LGGVLDTVIRYKLPVHYVSTGQ 527 + +G + P+ +V TGQ Sbjct: 594 DDKVGAAISMTYITSKPIVFVGTGQ 618 >ENSP00000374470 pep:known-ccds chromosome:NCBI36:11:125639021:125643909:-1 gene:ENSG00000182934 transcript:ENST00000389820 CCDS31717.1 Length = 638 Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 59/205 (28%), Positives = 92/205 (44%), Gaps = 23/205 (11%) Query: 344 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG 403 +R V G GVGK+T AK++ ++ G S V + D++R G EQLR + L Sbjct: 416 QRPYVVTFCGVNGVGKSTNLAKISF-WLLENGFS-VLIAACDTFRAGAVEQLRTHTRRLS 473 Query: 404 VPVHAVKDGGD--LQL---------------ALAELRNK--HMVLIDTIGMSQRDRTVSD 444 K GG +QL A+A RN+ +VL+DT G Q + + Sbjct: 474 ALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMT 533 Query: 445 QIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLA-GCILTKLDEA 503 +A L +TP L + A + ++++V+ R+ A A P L G +LTK D Sbjct: 534 ALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTI 593 Query: 504 SN-LGGVLDTVIRYKLPVHYVSTGQ 527 + +G + P+ +V TGQ Sbjct: 594 DDKVGAAISMTYITSKPIVFVGTGQ 618 >ENSP00000328023 pep:novel chromosome:NCBI36:11:125638052:125643993:-1 gene:ENSG00000182934 transcript:ENST00000332118 Length = 640 Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 59/205 (28%), Positives = 92/205 (44%), Gaps = 23/205 (11%) Query: 344 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG 403 +R V G GVGK+T AK++ ++ G S V + D++R G EQLR + L Sbjct: 418 QRPYVVTFCGVNGVGKSTNLAKISF-WLLENGFS-VLIAACDTFRAGAVEQLRTHTRRLS 475 Query: 404 VPVHAVKDGGD--LQL---------------ALAELRNK--HMVLIDTIGMSQRDRTVSD 444 K GG +QL A+A RN+ +VL+DT G Q + + Sbjct: 476 ALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMT 535 Query: 445 QIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLA-GCILTKLDEA 503 +A L +TP L + A + ++++V+ R+ A A P L G +LTK D Sbjct: 536 ALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTI 595 Query: 504 SN-LGGVLDTVIRYKLPVHYVSTGQ 527 + +G + P+ +V TGQ Sbjct: 596 DDKVGAAISMTYITSKPIVFVGTGQ 620 BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0062[320372] (700 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0063[320372] (405 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0064[320372] (166 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0065[320372] (458 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0066[320372] (434 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0067[320372] (516 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0068[320372] (167 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0069[320372] (242 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0070[320372] (188 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0071[320372] (364 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0072[320372] (234 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0073[320372] (314 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0074[320372] (673 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0076[320372] (1007 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0075[320372] (175 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0077[320372] (765 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BURPS1710b_0078[320372] (126 letters) Database: Homo_