BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BMA10247_A0001[320389] (41 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BMA10247_A0002[320389] (395 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BMA10247_A0003[320389] (347 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BMA10247_A0004[320389] (126 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BMA10247_A0005[320389] (202 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BMA10247_A0006[320389] (399 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ENSP00000248924 pep:known-ccds chromosome:NCBI36:22:36533891:365... 435 e-122 ENSP00000364116 pep:known-ccds chromosome:NCBI36:X:55052213:5507... 233 3e-61 ENSP00000337131 pep:known-ccds chromosome:NCBI36:X:55052213:5507... 233 3e-61 ENSP00000332369 pep:known-ccds chromosome:NCBI36:X:55052213:5507... 233 3e-61 ENSP00000309259 pep:known-ccds chromosome:NCBI36:3:52207156:5222... 204 1e-52 ENSP00000371110 pep:known chromosome:NCBI36:22:36533891:36543129... 193 2e-49 ENSP00000367436 pep:known chromosome:NCBI36:20:12937642:13093118... 186 4e-47 ENSP00000216484 pep:known-ccds chromosome:NCBI36:14:77043025:771... 180 3e-45 ENSP00000262554 pep:known-ccds chromosome:NCBI36:9:93833248:9391... 122 9e-28 >ENSP00000248924 pep:known-ccds chromosome:NCBI36:22:36533891:36543129:1 gene:ENSG00000100116 transcript:ENST00000248924 CCDS13957.1 Length = 419 Score = 435 bits (1119), Expect = e-122, Method: Compositional matrix adjust. Identities = 220/392 (56%), Positives = 279/392 (71%), Gaps = 5/392 (1%) Query: 9 LRGTLEQIRADGFYKTEREIASPQAADIRLAGGTH-VLNFCANNYLGLADDSRLIAAAQA 67 L G LE IR G +K+ER I S Q IR+ G + +LNFCANNYLGL+ +I A Sbjct: 31 LEGELEGIRGAGTWKSERVITSRQGPHIRVDGVSGGILNFCANNYLGLSSHPEVIQAGLQ 90 Query: 68 ALEQDGFGMASVRFICGTQTVHKQLEAALSAFLKTDDCILYSSCFDANGGLFETLLDEND 127 ALE+ G G++SVRFICGTQ++HK LEA ++ F + +D ILY SC+DAN GLFE LL D Sbjct: 91 ALEEFGAGLSSVRFICGTQSIHKNLEAKIARFHQREDAILYPSCYDANAGLFEALLTPED 150 Query: 128 AIISDELNHASIIDGIRLSKARRFRYKNNDLADLEAKLREADAAGARFKLIATDGVFSMD 187 A++SDELNHASIIDGIRL KA ++RY++ D+ADLEAKL+EA R +L+ATDG FSMD Sbjct: 151 AVLSDELNHASIIDGIRLCKAHKYRYRHLDMADLEAKLQEAQK--HRLRLVATDGAFSMD 208 Query: 188 GIIANLKGVCDLADRYGALVMVDDSHAVGFIGEHGRGTPEYCGVEGRVDIVTGTLGKALG 247 G IA L+ +C LA RYGALV +D+ HA GF+G GRGT E GV +V I+ TLGKALG Sbjct: 209 GDIAPLQEICCLASRYGALVFMDECHATGFLGPTGRGTDELLGVMDQVTIINSTLGKALG 268 Query: 248 GASGGYVAARREIVELLRQRSRPYLFSNTLTPSIAAASLKVLELLASDEGACLRERVRAN 307 GASGGY +V LLRQR+RPYLFSN+L P++ + K L+LL + + + A Sbjct: 269 GASGGYTTGPGPLVSLLRQRARPYLFSNSLPPAVVGCASKALDLLMGSN--TIVQSMAAK 326 Query: 308 GAHFREKMSAAGFALVPGEHPIIPVMLGDAQVASKMADALLAEGVYVIGFSFPVVPRGRA 367 FR KM AAGF + HPI PVMLGDA++AS+MAD +L G++VIGFS+PVVP+G+A Sbjct: 327 TQRFRSKMEAAGFTISGASHPICPVMLGDARLASRMADDMLKRGIFVIGFSYPVVPKGKA 386 Query: 368 RIRTQMSAAHTREQIDRAVDAFVRVGKTLGVI 399 RIR Q+SA H+ E IDR V+AFV VG+ G + Sbjct: 387 RIRVQISAVHSEEDIDRCVEAFVEVGRLHGAL 418 >ENSP00000364116 pep:known-ccds chromosome:NCBI36:X:55052213:55074135:-1 gene:ENSG00000158578 transcript:ENST00000374977 CCDS35303.1 Length = 550 Score = 233 bits (593), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 126/355 (35%), Positives = 207/355 (58%), Gaps = 6/355 (1%) Query: 47 FCANNYLGLADDSRLIAAAQAALEQDGFGMASVRFICGTQTVHKQLEAALSAFLKTDDCI 106 +C+N+YLG++ +++ A Q L++ G G R I GT H +LE L+ + D + Sbjct: 157 WCSNDYLGMSRHPQVLQATQETLQRHGAGAGGTRNISGTSKFHVELEQELAELHQKDSAL 216 Query: 107 LYSSCFDANGGLFETL--LDENDAIISDELNHASIIDGIRLSKARRFRYKNNDLADLEAK 164 L+SSCF AN TL + I SD NHAS+I GIR S A +F +++ND L+ Sbjct: 217 LFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAAKFVFRHNDPDHLKKL 276 Query: 165 LREADAAGARFKLIATDGVFSMDGIIANLKGVCDLADRYGALVMVDDSHAVGFIGEHGRG 224 L +++ K++A + V SMDG I L+ +CD++ +YGAL VD+ HAVG G G G Sbjct: 277 LEKSNPKIP--KIVAFETVHSMDGAICPLEELCDVSHQYGALTFVDEVHAVGLYGSRGAG 334 Query: 225 TPEYCGVEGRVDIVTGTLGKALGGASGGYVAARREIVELLRQRSRPYLFSNTLTPSIAAA 284 E G+ ++DI++GTLGKA G GGY+A+ R++V+++R + ++F+ +L P + + Sbjct: 335 IGERDGIMHKIDIISGTLGKAF-GCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSG 393 Query: 285 SLKVLELLASDEGACLRERVRANGAHFREKMSAAGFALVPGEHPIIPVMLGDAQVASKMA 344 +L+ + LL +EG LR + N H R+ + G ++P IIP+ +G+A + SK+ Sbjct: 394 ALESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSKLC 453 Query: 345 DALLAE-GVYVIGFSFPVVPRGRARIRTQMSAAHTREQIDRAVDAFVRVGKTLGV 398 D LL++ G+YV ++P VPRG +R S H+ + ++ V+ + +G+ Sbjct: 454 DLLLSKHGIYVQAINYPTVPRGEELLRLAPSPHHSPQMMEDFVEKLLLAWTAVGL 508 >ENSP00000337131 pep:known-ccds chromosome:NCBI36:X:55052213:55074136:-1 gene:ENSG00000158578 transcript:ENST00000335854 CCDS35303.1 Length = 550 Score = 233 bits (593), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 126/355 (35%), Positives = 207/355 (58%), Gaps = 6/355 (1%) Query: 47 FCANNYLGLADDSRLIAAAQAALEQDGFGMASVRFICGTQTVHKQLEAALSAFLKTDDCI 106 +C+N+YLG++ +++ A Q L++ G G R I GT H +LE L+ + D + Sbjct: 157 WCSNDYLGMSRHPQVLQATQETLQRHGAGAGGTRNISGTSKFHVELEQELAELHQKDSAL 216 Query: 107 LYSSCFDANGGLFETL--LDENDAIISDELNHASIIDGIRLSKARRFRYKNNDLADLEAK 164 L+SSCF AN TL + I SD NHAS+I GIR S A +F +++ND L+ Sbjct: 217 LFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAAKFVFRHNDPDHLKKL 276 Query: 165 LREADAAGARFKLIATDGVFSMDGIIANLKGVCDLADRYGALVMVDDSHAVGFIGEHGRG 224 L +++ K++A + V SMDG I L+ +CD++ +YGAL VD+ HAVG G G G Sbjct: 277 LEKSNPKIP--KIVAFETVHSMDGAICPLEELCDVSHQYGALTFVDEVHAVGLYGSRGAG 334 Query: 225 TPEYCGVEGRVDIVTGTLGKALGGASGGYVAARREIVELLRQRSRPYLFSNTLTPSIAAA 284 E G+ ++DI++GTLGKA G GGY+A+ R++V+++R + ++F+ +L P + + Sbjct: 335 IGERDGIMHKIDIISGTLGKAF-GCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSG 393 Query: 285 SLKVLELLASDEGACLRERVRANGAHFREKMSAAGFALVPGEHPIIPVMLGDAQVASKMA 344 +L+ + LL +EG LR + N H R+ + G ++P IIP+ +G+A + SK+ Sbjct: 394 ALESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSKLC 453 Query: 345 DALLAE-GVYVIGFSFPVVPRGRARIRTQMSAAHTREQIDRAVDAFVRVGKTLGV 398 D LL++ G+YV ++P VPRG +R S H+ + ++ V+ + +G+ Sbjct: 454 DLLLSKHGIYVQAINYPTVPRGEELLRLAPSPHHSPQMMEDFVEKLLLAWTAVGL 508 >ENSP00000332369 pep:known-ccds chromosome:NCBI36:X:55052213:55074136:-1 gene:ENSG00000158578 transcript:ENST00000330807 CCDS14366.1 Length = 587 Score = 233 bits (593), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 126/355 (35%), Positives = 207/355 (58%), Gaps = 6/355 (1%) Query: 47 FCANNYLGLADDSRLIAAAQAALEQDGFGMASVRFICGTQTVHKQLEAALSAFLKTDDCI 106 +C+N+YLG++ +++ A Q L++ G G R I GT H +LE L+ + D + Sbjct: 194 WCSNDYLGMSRHPQVLQATQETLQRHGAGAGGTRNISGTSKFHVELEQELAELHQKDSAL 253 Query: 107 LYSSCFDANGGLFETL--LDENDAIISDELNHASIIDGIRLSKARRFRYKNNDLADLEAK 164 L+SSCF AN TL + I SD NHAS+I GIR S A +F +++ND L+ Sbjct: 254 LFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAAKFVFRHNDPDHLKKL 313 Query: 165 LREADAAGARFKLIATDGVFSMDGIIANLKGVCDLADRYGALVMVDDSHAVGFIGEHGRG 224 L +++ K++A + V SMDG I L+ +CD++ +YGAL VD+ HAVG G G G Sbjct: 314 LEKSNPKIP--KIVAFETVHSMDGAICPLEELCDVSHQYGALTFVDEVHAVGLYGSRGAG 371 Query: 225 TPEYCGVEGRVDIVTGTLGKALGGASGGYVAARREIVELLRQRSRPYLFSNTLTPSIAAA 284 E G+ ++DI++GTLGKA G GGY+A+ R++V+++R + ++F+ +L P + + Sbjct: 372 IGERDGIMHKIDIISGTLGKAF-GCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSG 430 Query: 285 SLKVLELLASDEGACLRERVRANGAHFREKMSAAGFALVPGEHPIIPVMLGDAQVASKMA 344 +L+ + LL +EG LR + N H R+ + G ++P IIP+ +G+A + SK+ Sbjct: 431 ALESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSKLC 490 Query: 345 DALLAE-GVYVIGFSFPVVPRGRARIRTQMSAAHTREQIDRAVDAFVRVGKTLGV 398 D LL++ G+YV ++P VPRG +R S H+ + ++ V+ + +G+ Sbjct: 491 DLLLSKHGIYVQAINYPTVPRGEELLRLAPSPHHSPQMMEDFVEKLLLAWTAVGL 545 >ENSP00000309259 pep:known-ccds chromosome:NCBI36:3:52207156:52223383:1 gene:ENSG00000023330 transcript:ENST00000310271 CCDS2847.1 Length = 640 Score = 204 bits (519), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 120/355 (33%), Positives = 198/355 (55%), Gaps = 6/355 (1%) Query: 47 FCANNYLGLADDSRLIAAAQAALEQDGFGMASVRFICGTQTVHKQLEAALSAFLKTDDCI 106 +C+N+YLG++ R+ A L+Q G G R I GT H LE L+ D + Sbjct: 248 WCSNDYLGMSRHPRVCGAVMDTLKQHGAGAGGTRNISGTSKFHVDLERELADLHGKDAAL 307 Query: 107 LYSSCFDANGGLFETL--LDENDAIISDELNHASIIDGIRLSKARRFRYKNNDLADLEAK 164 L+SSCF AN TL + I SD NHAS+I GIR S+ ++ +++ND++ L Sbjct: 308 LFSSCFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQGIRNSRVPKYIFRHNDVSHLREL 367 Query: 165 LREADAAGARFKLIATDGVFSMDGIIANLKGVCDLADRYGALVMVDDSHAVGFIGEHGRG 224 L+ +D + K++A + V SMDG + L+ +CD+A +GA+ VD+ HAVG G G G Sbjct: 368 LQRSDPSVP--KIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGLYGARGGG 425 Query: 225 TPEYCGVEGRVDIVTGTLGKALGGASGGYVAARREIVELLRQRSRPYLFSNTLTPSIAAA 284 + GV ++DI++GTLGKA G GGY+A+ +++ +R + ++F+ +L P + A Sbjct: 426 IGDRDGVMPKMDIISGTLGKAFGCV-GGYIASTSSLIDTVRSYAAGFIFTTSLPPMLLAG 484 Query: 285 SLKVLELLASDEGACLRERVRANGAHFREKMSAAGFALVPGEHPIIPVMLGDAQVASKMA 344 +L+ + +L S EG LR + + N R+ + AG +V IIPV + DA +++ Sbjct: 485 ALESVRILKSAEGRVLRRQHQRNVKLMRQMLMDAGLPVVHCPSHIIPVRVADAAKNTEVC 544 Query: 345 DALLA-EGVYVIGFSFPVVPRGRARIRTQMSAAHTREQIDRAVDAFVRVGKTLGV 398 D L++ +YV ++P VPRG +R + HT + ++ ++ + K +G+ Sbjct: 545 DELMSRHNIYVQAINYPTVPRGEELLRIAPTPHHTPQMMNYFLENLLVTWKQVGL 599 >ENSP00000371110 pep:known chromosome:NCBI36:22:36533891:36543129:1 gene:ENSG00000100116 transcript:ENST00000323205 Length = 247 Score = 193 bits (491), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 102/203 (50%), Positives = 129/203 (63%), Gaps = 29/203 (14%) Query: 9 LRGTLEQIRADGFYKTEREIASPQAADIRLAG---------------------------G 41 L G LE IR G +K+ER I S Q IR+ G Sbjct: 31 LEGELEGIRGAGTWKSERVITSRQGPHIRVDGVSGGPGTVIFPGLPLPHLSCCIHLLSFT 90 Query: 42 THVLNFCANNYLGLADDSRLIAAAQAALEQDGFGMASVRFICGTQTVHKQLEAALSAFLK 101 + +LNFCANNYLGL+ +I A ALE+ G G++SVRFICGTQ++HK LEA ++ F + Sbjct: 91 SGILNFCANNYLGLSSHPEVIQAGLQALEEFGAGLSSVRFICGTQSIHKNLEAKIARFHQ 150 Query: 102 TDDCILYSSCFDANGGLFETLLDENDAIISDELNHASIIDGIRLSKARRFRYKNNDLADL 161 +D ILY SC+DAN GLFE LL DA++SDELNHASIIDGIRL KA ++RY++ D+ADL Sbjct: 151 REDAILYPSCYDANAGLFEALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLDMADL 210 Query: 162 EAKLREADAAGARFKLIATDGVF 184 EAKL+EA R +L+ATDG F Sbjct: 211 EAKLQEAQK--HRLRLVATDGAF 231 >ENSP00000367436 pep:known chromosome:NCBI36:20:12937642:13093118:1 gene:ENSG00000172296 transcript:ENST00000378194 Length = 523 Score = 186 bits (472), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 117/365 (32%), Positives = 202/365 (55%), Gaps = 19/365 (5%) Query: 44 VLNFCANNYLGLA---DDSRLIAAAQAALEQDGFGMASVRFICGTQTVHKQLEAALSAFL 100 V+N + N+LGLA D+S + + LE G G+AS R GT HK+LE ++ FL Sbjct: 162 VINMGSYNFLGLAAKYDES--MRTIKDVLEVYGTGVASTRHEMGTLDKHKELEDLVAKFL 219 Query: 101 KTDDCILYSSCFDANGGLFETLLDENDAIISDELNHASIIDGIRLSKARRFRYKNNDLAD 160 + +++ F N L+ + I+SDELNH S++ G RLS A +K+N+ Sbjct: 220 NVEAAMVFGMGFATNSMNIPALVGKGCLILSDELNHTSLVLGARLSGATIRIFKHNNTQS 279 Query: 161 LEAKLREADAAG-------ARFKLIATDGVFSMDGIIANLKGVCDLADRYGALVMVDDSH 213 LE LR+A G + LI +GV+SM+G I +L + L +Y A + +D++H Sbjct: 280 LEKLLRDAVIYGQPRTRRAWKKILILVEGVYSMEGSIVHLPQIIALKKKYKAYLYIDEAH 339 Query: 214 AVGFIGEHGRGTPEYCGVEGR-VDIVTGTLGKALGGASGGYVAARREIVELLRQRSRPYL 272 ++G +G GRG E+ G++ VD++ GT K+ GASGGY+A R+++V+ LR S + Sbjct: 340 SIGAVGPTGRGVTEFFGLDPHEVDVLMGTFTKSF-GASGGYIAGRKDLVDYLRVHSHSAV 398 Query: 273 FSNTLTPSIAAASLKVLELL----ASDEGACLRERVRANGAHFREKMSAAGFALVPGEH- 327 ++++++P IA ++ L+L+ + +G +++ N +FR+++ GF + E+ Sbjct: 399 YASSMSPPIAEQIIRSLKLIMGLDGTTQGLQRVQQLAKNTRYFRQRLQEMGFIIYGNENA 458 Query: 328 PIIPVMLGDAQVASKMADALLAEGVYVIGFSFPVVPRGRARIRTQMSAAHTREQIDRAVD 387 ++P++L + A +L + + V+ FP P AR R +SAAHTRE +D + Sbjct: 459 SVVPLLLYMPGKVAAFARHMLEKKIGVVVVGFPATPLAEARARFCVSAAHTREMLDTVIC 518 Query: 388 AFVRV 392 +++ Sbjct: 519 CVMKI 523 >ENSP00000216484 pep:known-ccds chromosome:NCBI36:14:77043025:77152863:-1 gene:ENSG00000100596 transcript:ENST00000216484 CCDS9865.1 Length = 562 Score = 180 bits (456), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 115/367 (31%), Positives = 191/367 (52%), Gaps = 15/367 (4%) Query: 44 VLNFCANNYLGLADDS-RLIAAAQAALEQDGFGMASVRFICGTQTVHKQLEAALSAFLKT 102 V+N + NYLG A ++ AA LE+ G G+ S R G H++LE ++ FL Sbjct: 170 VINMGSYNYLGFARNTGSCQEAAAKVLEEYGAGVCSTRQEIGNLDKHEELEELVARFLGV 229 Query: 103 DDCILYSSCFDANGGLFETLLDENDAIISDELNHASIIDGIRLSKARRFRYKNNDLADLE 162 + + Y F N L+ + I+SDELNHAS++ G RLS A +K+N++ LE Sbjct: 230 EAAMAYGMGFATNSMNIPALVGKGCLILSDELNHASLVLGARLSGATIRIFKHNNMQSLE 289 Query: 163 AKLREADAAG-------ARFKLIATDGVFSMDGIIANLKGVCDLADRYGALVMVDDSHAV 215 L++A G + LI +G++SM+G I L V L +Y A + +D++H++ Sbjct: 290 KLLKDAIVYGQPRTRRPWKKILILVEGIYSMEGSIVRLPEVIALKKKYKAYLYLDEAHSI 349 Query: 216 GFIGEHGRGTPEYCGVEGR-VDIVTGTLGKALGGASGGYVAARREIVELLRQRSRPYLFS 274 G +G GRG EY G++ VD++ GT K+ GASGGY+ ++E+++ LR S +++ Sbjct: 350 GALGPTGRGVVEYFGLDPEDVDVMMGTFTKSF-GASGGYIGGKKELIDYLRTHSHSAVYA 408 Query: 275 NTLTPSIAAASLKVLELLASDEGACL----RERVRANGAHFREKMSAAGFALVPGE-HPI 329 +L+P + + ++ + +G L +++ N +FR ++ GF + E P+ Sbjct: 409 TSLSPPVVEQIITSMKCIMGQDGTSLGKECVQQLAENTRYFRRRLKEMGFIIYGNEDSPV 468 Query: 330 IPVMLGDAQVASKMADALLAEGVYVIGFSFPVVPRGRARIRTQMSAAHTREQIDRAVDAF 389 +P+ML +L + V+ FP P +R R +SAAHT+E +D A+ Sbjct: 469 VPLMLYMPAKIGAFGREMLKRNIGVVVVGFPATPIIESRARFCLSAAHTKEILDTALKEI 528 Query: 390 VRVGKTL 396 VG L Sbjct: 529 DEVGDLL 535 >ENSP00000262554 pep:known-ccds chromosome:NCBI36:9:93833248:93917511:-1 gene:ENSG00000090054 transcript:ENST00000262554 CCDS6692.1 Length = 473 Score = 122 bits (305), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 86/287 (29%), Positives = 146/287 (50%), Gaps = 12/287 (4%) Query: 28 IASPQAADIRLAGGTHVLNFCANNYLGLADDSRLIAAAQAALEQDGFGMASVRFICGTQT 87 I S + + G +NF + N+LGL D+ R+ AAA A+L++ G G R GT Sbjct: 84 IVSGPPSHKTVVNGKECINFASFNFLGLLDNPRVKAAALASLKKYGVGTCGPRGFYGTFD 143 Query: 88 VHKQLEAALSAFLKTDDCILYSSCFDANGGLFETLLDENDAIISDELNHASIIDGIRLSK 147 VH LE L+ F+KT++ I+YS F D + D +I G++ S+ Sbjct: 144 VHLDLEDRLAKFMKTEEAIIYSYGFATIASAIPAYSKRGDIVFVDRAACFAIQKGLQASR 203 Query: 148 ARRFRYKNNDLADLEAKLREAD--------AAGARFKLIATDGVFSMDGIIANLKGVCDL 199 + +K+ND+ADLE L+E + A + I +G++ G I L + L Sbjct: 204 SDIKLFKHNDMADLERLLKEQEIEDQKNPRKARVTRRFIVVEGLYMNTGTICPLPELVKL 263 Query: 200 ADRYGALVMVDDSHAVGFIGEHGRGTPEYCGVE-GRVDIVTGTLGKALGGASGGYVAARR 258 +Y A + +++S + G +GEHGRG E+ G+ +D+++ + AL GG+ R Sbjct: 264 KYKYKARIFLEESLSFGVLGEHGRGVTEHYGINIDDIDLISANMENALASI-GGFCCGRS 322 Query: 259 EIVELLRQRSRPYLFSNTLTPSIAAASLKVLELLASDEG--ACLRER 303 +++ R + Y FS +L P +AAA+++ L ++ + G A L+E+ Sbjct: 323 FVIDHQRLSGQGYCFSASLPPLLAAAAIEALNIMEENPGIFAVLKEK 369 BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BMA10247_A0007[320389] (343 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ENSP00000267814 pep:known-ccds chromosome:NCBI36:15:43102637:431... 146 3e-35 ENSP00000209668 pep:known-ccds chromosome:NCBI36:4:100416547:100... 89 8e-18 ENSP00000306606 pep:known-ccds chromosome:NCBI36:4:100445157:100... 86 6e-17 ENSP00000209665 pep:known-ccds chromosome:NCBI36:4:100552441:100... 84 2e-16 ENSP00000237653 pep:known-ccds chromosome:NCBI36:4:100344902:100... 79 6e-15 ENSP00000296412 pep:known chromosome:NCBI36:4:100212327:10022539... 72 6e-13 ENSP00000265512 pep:known-ccds chromosome:NCBI36:4:100263855:100... 64 2e-10 ENSP00000346737 pep:known chromosome:NCBI36:4:100342818:10035942... 55 9e-08 >ENSP00000267814 pep:known-ccds chromosome:NCBI36:15:43102637:43154330:1 gene:ENSG00000140263 transcript:ENST00000267814 CCDS10116.1 Length = 357 Score = 146 bits (369), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 93/341 (27%), Positives = 172/341 (50%), Gaps = 8/341 (2%) Query: 4 LAKLERGPG-LTLTRVKKPEVGHNDVLIKIRRTAICGTDIHIWKWDDWAQKTIPVPMHVG 62 L+ + GPG L L PE G N+VL+++ ICG+D+H W++ + PM +G Sbjct: 10 LSLVVHGPGDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLG 69 Query: 63 HEYVGEIVEMGQEVRGFSIGDRVSGEGHITCGFCRNCRAGRRHLCRNTVGVGVNR-EGAF 121 HE G + ++G V+ GDRV+ E C+ GR +L + +G Sbjct: 70 HEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGNL 129 Query: 122 AEYLAIPAFNAFKIPPEISDDLAAIFDPFGNATHTALSFNL-VGEDVLITGAGPIGVMAV 180 + A +K+P ++ + A+ +P H + +G VL+ GAGPIG++ + Sbjct: 130 CRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGIHACRRGGVTLGHKVLVCGAGPIGMVTL 189 Query: 181 AIAKHVGARNVVITDINDYRLELARKMGATRAVNVSRESLRDVMADLHMTEGF--DVGLE 238 +AK +GA VV+TD++ RL A+++GA + +S+ES +++ + G +V +E Sbjct: 190 LVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIE 249 Query: 239 MSGVPSAFTSLLESMNHGGKVALLGIPPAQTAIDWNQVIFKGLEIKGIYGREMFETWYKM 298 +G ++ + + + GG + L+G+ T + + ++IKG++ TW Sbjct: 250 CTGAEASIQAGIYATRSGGNLVLVGLGSEMTTVPLLHAAIREVDIKGVF--RYCNTWPVA 307 Query: 299 VAMLQS-GLDLSPIITHRFAVDDYEKGFAAMLSGESGKVIL 338 ++ML S +++ P++THRF ++ + F G K++L Sbjct: 308 ISMLASKSVNVKPLVTHRFPLEKALEAFETFKKGLGLKIML 348 >ENSP00000209668 pep:known-ccds chromosome:NCBI36:4:100416547:100431165:-1 gene:ENSG00000187758 transcript:ENST00000209668 CCDS3648.1 Length = 375 Score = 89.0 bits (219), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 86/348 (24%), Positives = 150/348 (43%), Gaps = 44/348 (12%) Query: 26 NDVLIKIRRTAICGTDIHIWKWDDWAQKTIPVPMHVGHEYVGEIVEMGQEVRGFSIGDRV 85 ++V IK+ ICGTD H+ P+P+ +GHE G + +G+ V GD+V Sbjct: 35 HEVRIKMVAVGICGTDDHVVS----GTMVTPLPVILGHEAAGIVESVGEGVTTVKPGDKV 90 Query: 86 SGEGHITCGFCRNCRAGRRHLC--------RNTVGVGVNR----EGAFAEYLAIPAFNAF 133 CG CR C+ + C + T+ G +R +L I F+ + Sbjct: 91 IPLAIPQCGKCRICKNPESNYCLKNDVSNPQGTLQDGTSRFTCRRKPIHHFLGISTFSQY 150 Query: 134 KIPPEIS----------DDLAAIFDPFGNATHTALSFNLV--GEDVLITGAGPIGVMAVA 181 + E + + + I F +A++ V G + G G +G+ A+ Sbjct: 151 TVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVNVAKVTPGSTCAVFGLGGVGLSAIM 210 Query: 182 IAKHVGARNVVITDINDYRLELARKMGATRAVNVS--RESLRDVMADLHMTE-GFDVGLE 238 K GA ++ DIN + A+++GAT +N ++ +++V+ + MT+ G D E Sbjct: 211 GCKAAGAARIIAVDINKDKFAKAKELGATECINPQDYKKPIQEVLKE--MTDGGVDFSFE 268 Query: 239 MSG-VPSAFTSLLESMNHGGKVALLGIPPAQTAIDWNQVIF------KGLEIKGIYGREM 291 + G + + SLL G ++G+PP + N ++ KG + G +E Sbjct: 269 VIGRLDTMMASLLCCHEACGTSVIVGVPPDSQNLSMNPMLLLTGRTWKGAILGGFKSKEC 328 Query: 292 FETWYKMVA-MLQSGLDLSPIITHRFAVDDYEKGFAAMLSGESGKVIL 338 K+VA + L +ITH + +GF + SG+S + IL Sbjct: 329 VP---KLVADFMAKKFSLDALITHVLPFEKINEGFDLLHSGKSIRTIL 373 >ENSP00000306606 pep:known-ccds chromosome:NCBI36:4:100445157:100461579:-1 gene:ENSG00000196616 transcript:ENST00000305046 CCDS34033.1 Length = 375 Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 88/346 (25%), Positives = 152/346 (43%), Gaps = 38/346 (10%) Query: 27 DVLIKIRRTAICGTDIHIWKWDDWAQKTIPVPMHVGHEYVGEIVEMGQEVRGFSIGDRVS 86 +V IK+ IC TD H+ + P+P+ +GHE G + +G+ V GD+V Sbjct: 36 EVRIKMVAVGICHTDDHVVSGN----LVTPLPVILGHEAAGIVESVGEGVTTVKPGDKVI 91 Query: 87 GEGHITCGFCRNCRAGRRHLC--------RNTVGVGVNREGAFAE----YLAIPAFNAFK 134 CG CR C+ + C R T+ G R + +L F+ + Sbjct: 92 PLFTPQCGKCRVCKNPESNYCLKNDLGNPRGTLQDGTRRFTCRGKPIHHFLGTSTFSQYT 151 Query: 135 IPPEIS----------DDLAAIFDPFGNATHTALSFNLV--GEDVLITGAGPIGVMAVAI 182 + E + + + I F +A++ V G + G G +G+ AV Sbjct: 152 VVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVNVAKVTPGSTCAVFGLGGVGLSAVMG 211 Query: 183 AKHVGARNVVITDINDYRLELARKMGATRAVNVS--RESLRDVMADLHMTE-GFDVGLEM 239 K GA ++ DIN + A+++GAT +N ++ +++V+ + MT+ G D E+ Sbjct: 212 CKAAGAARIIAVDINKDKFAKAKELGATECINPQDYKKPIQEVLKE--MTDGGVDFSFEV 269 Query: 240 SG-VPSAFTSLLESMNHGGKVALLGIPPAQTAIDWN-QVIFKGLEIKG-IYGR-EMFETW 295 G + + SLL G ++G+PPA + N ++ G KG +YG + E Sbjct: 270 IGRLDTMMASLLCCHEACGTSVIVGVPPASQNLSINPMLLLTGRTWKGAVYGGFKSKEGI 329 Query: 296 YKMVA-MLQSGLDLSPIITHRFAVDDYEKGFAAMLSGESGKVILDW 340 K+VA + L +ITH + +GF + SG+S + +L + Sbjct: 330 PKLVADFMAKKFSLDALITHVLPFEKINEGFDLLHSGKSIRTVLTF 375 >ENSP00000209665 pep:known-ccds chromosome:NCBI36:4:100552441:100575548:-1 gene:ENSG00000196344 transcript:ENST00000209665 CCDS34034.1 Length = 386 Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 93/348 (26%), Positives = 147/348 (42%), Gaps = 41/348 (11%) Query: 26 NDVLIKIRRTAICGTDIHIWKWDDWAQKTIPVPMHVGHEYVGEIVEMGQEVRGFSIGDRV 85 +V IKI T IC TD H+ K ++ P+ VGHE G + +G+ V GD+V Sbjct: 47 KEVRIKILATGICRTDDHVIKGTMVSK----FPVIVGHEATGIVESIGEGVTTVKPGDKV 102 Query: 86 SGEGHITCGFCRNCRAGRRHLC--RNTVGVGVNREGA------------------FAEYL 125 C C CR +LC + G GV +G F EY Sbjct: 103 IPLFLPQCRECNACRNPDGNLCIRSDITGRGVLADGTTRFTCKGKPVHHFMNTSTFTEYT 162 Query: 126 AIPAFNAFKI----PPEISDDLAAIFDP-FGNATHTALSFNLVGEDVLITGAGPIGVMAV 180 + + KI PPE + F +G A T G ++ G G +G+ + Sbjct: 163 VVDESSVAKIDDAAPPEKVCLIGCGFSTGYGAAVKTGKVKP--GSTCVVFGLGGVGLSVI 220 Query: 181 AIAKHVGARNVVITDINDYRLELARKMGATRAVNVSRESLRDVMADLHMTEGFDVG--LE 238 K GA ++ D+N + E A +GAT ++ ++S + + L G +VG E Sbjct: 221 MGCKSAGASRIIGIDLNKDKFEKAMAVGATECIS-PKDSTKPISEVLSEMTGNNVGYTFE 279 Query: 239 MSGVPSAFTSLLES--MNHGGKVALLGIPPAQTAIDWN-QVIFKGLEIKGIY--GREMFE 293 + G L S MN+G V ++G+PP+ + ++ ++F G KG G + + Sbjct: 280 VIGHLETMIDALASCHMNYGTSV-VVGVPPSAKMLTYDPMLLFTGRTWKGCVFGGLKSRD 338 Query: 294 TWYKMVA-MLQSGLDLSPIITHRFAVDDYEKGFAAMLSGESGKVILDW 340 K+V L DL +ITH +GF + SG+S + +L + Sbjct: 339 DVPKLVTEFLAKKFDLDQLITHVLPFKKISEGFELLNSGQSIRTVLTF 386 >ENSP00000237653 pep:known-ccds chromosome:NCBI36:4:100344902:100359424:-1 gene:ENSG00000172955 transcript:ENST00000237653 CCDS3647.1 Length = 368 Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 90/346 (26%), Positives = 145/346 (41%), Gaps = 52/346 (15%) Query: 26 NDVLIKIRRTAICGTDIHIW--KWDDWAQKTIPVPMHVGHEYVGEIVEMGQEVRGFSIGD 83 +V IK+ T +CGT++ + K D TI +GHE G + +G+ V GD Sbjct: 35 KEVRIKVVATGLCGTEMKVLGSKHLDLLYPTI-----LGHEGAGIVESIGEGVSTVKPGD 89 Query: 84 RVSGEGHITCGFCRNCRAGRRHLC-------RNTVGVGVNR-------------EGAFAE 123 +V CG C +C + C + G +R F E Sbjct: 90 KVITLFLPQCGECTSCLNSEGNFCIQFKQSKTQLMSDGTSRFTCKGKSIYHFGNTSTFCE 149 Query: 124 YLAIPAFNAFKI----PPEISDDLAAIFDP-FGNATHTALSFNLVGEDVLITGAGPIGVM 178 Y I + KI P E ++ F FG A +TA G + G G +G+ Sbjct: 150 YTVIKEISVAKIDAVAPLEKVCLISCGFSTGFGAAINTAKVTP--GSTCAVFGLGGVGLS 207 Query: 179 AVAIAKHVGARNVVITDINDYRLELARKMGATRAVNVS--RESLRDVMADLHMTE-GFDV 235 V K GA ++ D+N + + A+++GAT +N ++ +++V+ D MT+ G D Sbjct: 208 VVMGCKAAGAARIIGVDVNKEKFKKAQELGATECLNPQDLKKPIQEVLFD--MTDAGIDF 265 Query: 236 GLEMSGVPSAFTSLLESMNHG-GKVALLGIPPAQTAIDWN-QVIFKGLEIKGIYGREMFE 293 E G + L S N G ++G+ PA + + Q+ F G +KG +F Sbjct: 266 CFEAIGNLDVLAAALASCNESYGVCVVVGVLPASVQLKISGQLFFSGRSLKG----SVFG 321 Query: 294 TWY------KMVA-MLQSGLDLSPIITHRFAVDDYEKGFAAMLSGE 332 W K+VA + L+L P+ITH +D + M +G+ Sbjct: 322 GWKSRQHIPKLVADYMAEKLNLDPLITHTLNLDKINEAVELMKTGK 367 >ENSP00000296412 pep:known chromosome:NCBI36:4:100212327:100225399:-1 gene:ENSG00000197894 transcript:ENST00000296412 Length = 373 Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 92/379 (24%), Positives = 153/379 (40%), Gaps = 57/379 (15%) Query: 2 KALAKLERGPGLTLTRVKKPEVGHNDVLIKIRRTAICGTDIHIWKWDDWAQKTIPVPMHV 61 KA E G L++ ++ ++V IKI TA+C TD + D + PV + Sbjct: 8 KAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGAD-PEGCFPVIL-- 64 Query: 62 GHEYVGEIVEMGQEVRGFSIGDRVSGEGHITCGFCRNCRAGRRHLC---RNTVGVGVNRE 118 GHE G + +G+ V GD V CG C+ C + +LC R T G G+ + Sbjct: 65 GHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPD 124 Query: 119 GA------------------FAEYLAIPAFNAFKIPPEISDDLAAIFDP-----FGNATH 155 G F+EY + + KI P D + +G A + Sbjct: 125 GTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGAAVN 184 Query: 156 TALSFNLVGEDVLITGAGPIGVMAVAIAKHVGARNVVITDINDYRLELARKMGATRAVNV 215 TA G + G G +G+ + K GA ++ DIN + A++ GAT +N Sbjct: 185 TAKLEP--GSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINP 242 Query: 216 S--RESLRDVMADLHMTE-GFDVGLEMSGVPSAFTSLLESMNHGGKVAL----------L 262 + +++V+ + MT+ G D E G + LE+ + G V++ + Sbjct: 243 QDFSKPIQEVL--IEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEEI 300 Query: 263 GIPPAQ--TAIDWNQVIFKGLEIKGIYGREMFETWYKMVA-MLQSGLDLSPIITHRFAVD 319 P Q T W F G + E+ K+V+ + + + +TH + D Sbjct: 301 ATRPFQLVTGRTWKGTAFGGW--------KSVESVPKLVSEYMSKKIKVDEFVTHNLSFD 352 Query: 320 DYEKGFAAMLSGESGKVIL 338 + K F M SG+S + ++ Sbjct: 353 EINKAFELMHSGKSIRTVV 371 >ENSP00000265512 pep:known-ccds chromosome:NCBI36:4:100263855:100284472:-1 gene:ENSG00000198099 transcript:ENST00000265512 CCDS34032.1 Length = 380 Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 82/373 (21%), Positives = 149/373 (39%), Gaps = 41/373 (10%) Query: 2 KALAKLERGPGLTLTRVKKPEVGHNDVLIKIRRTAICGTDIHIWKWDDWAQKTIPVPMHV 61 KA E G L + V+ ++V I+I T++C TD + D + + P+ V Sbjct: 11 KAAIAWEAGKPLCIEEVEVAPPKAHEVRIQIIATSLCHTDATVI---DSKFEGLAFPVIV 67 Query: 62 GHEYVGEIVEMGQEVRGFSIGDRVSGEGHITCGFCRNCRAGRRHLC---RNTVGVGVNRE 118 GHE G + +G V GD+V C C+ C + +LC N +++ Sbjct: 68 GHEAAGIVESIGPGVTNVKPGDKVIPLYAPLCRKCKFCLSPLTNLCGKISNLKSPASDQQ 127 Query: 119 ----------------------GAFAEYLAIPAFNAFKIPPEISDDLAAIFDPFGNATHT 156 F++Y + N KI + + + + G +T Sbjct: 128 LMEDKTSRFTCKGKPVYHFFGTSTFSQYTVVSDINLAKIDDDANLERVCLLG-CGFSTGY 186 Query: 157 ALSFN----LVGEDVLITGAGPIGVMAVAIAKHVGARNVVITDINDYRLELARKMGATRA 212 + N G + G G +G+ AV K GA ++ DIN + A+ +GAT Sbjct: 187 GAAINNAKVTPGSTCAVFGLGGVGLSAVMGCKAAGASRIIGIDINSEKFVKAKALGATDC 246 Query: 213 VNVS--RESLRDVMADLHMTEGFDVGLEMSGVPSAFTSLLESMNHG-GKVALLGIPPAQT 269 +N + +++V+ +L G D L+ +G + L+ G G +G+ Sbjct: 247 LNPRDLHKPIQEVIIEL-TKGGVDFALDCAGGSETMKAALDCTTAGWGSCTFIGVAAGSK 305 Query: 270 AID-WNQVIFKGLEIKGIY--GREMFETWYKMVAMLQS-GLDLSPIITHRFAVDDYEKGF 325 + + + + G I G + G + ++ K+V ++ +L ++TH D + F Sbjct: 306 GLTIFPEELIIGRTINGTFFGGWKSVDSIPKLVTDYKNKKFNLDALVTHTLPFDKISEAF 365 Query: 326 AAMLSGESGKVIL 338 M G+S + IL Sbjct: 366 DLMNQGKSVRTIL 378 >ENSP00000346737 pep:known chromosome:NCBI36:4:100342818:100359426:-1 gene:ENSG00000172955 transcript:ENST00000354704 Length = 295 Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 62/245 (25%), Positives = 100/245 (40%), Gaps = 37/245 (15%) Query: 26 NDVLIKIRRTAICGTDIHIW--KWDDWAQKTIPVPMHVGHEYVGEIVEMGQEVRGFSIGD 83 +V IK+ T +CGT++ + K D TI +GHE G + +G+ V GD Sbjct: 35 KEVRIKVVATGLCGTEMKVLGSKHLDLLYPTI-----LGHEGAGIVESIGEGVSTVKPGD 89 Query: 84 RVSGEGHITCGFCRNCRAGRRHLC-------RNTVGVGVNR-------------EGAFAE 123 +V CG C +C + C + G +R F E Sbjct: 90 KVITLFLPQCGECTSCLNSEGNFCIQFKQSKTQLMSDGTSRFTCKGKSIYHFGNTSTFCE 149 Query: 124 YLAIPAFNAFKI----PPEISDDLAAIFDP-FGNATHTALSFNLVGEDVLITGAGPIGVM 178 Y I + KI P E ++ F FG A +TA G + G G +G+ Sbjct: 150 YTVIKEISVAKIDAVAPLEKVCLISCGFSTGFGAAINTAKV--TPGSTCAVFGLGGVGLS 207 Query: 179 AVAIAKHVGARNVVITDINDYRLELARKMGATRAVNVS--RESLRDVMADLHMTEGFDVG 236 V K GA ++ D+N + + A+++GAT +N ++ +++V+ D+ G D Sbjct: 208 VVMGCKAAGAARIIGVDVNKEKFKKAQELGATECLNPQDLKKPIQEVLFDM-TDAGIDFC 266 Query: 237 LEMSG 241 E G Sbjct: 267 FEAIG 271 BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BMA10247_A0008[320389] (93 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BMA10247_A0009[320389] (199 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BMA10247_A0010[320389] (42 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BMA10247_A0011[320389] (205 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BMA10247_A0012[320389] (202 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BMA10247_A0013[320389] (338 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BMA10247_A0014[320389] (396 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ENSP00000299518 pep:known-ccds chromosome:NCBI36:15:76228774:762... 176 6e-44 ENSP00000370223 pep:known-ccds chromosome:NCBI36:20:2587041:2592... 129 7e-30 ENSP00000370247 pep:known chromosome:NCBI36:20:2587040:2592835:-... 129 7e-30 ENSP00000217901 pep:known-ccds chromosome:NCBI36:X:152704415:152... 127 2e-29 ENSP00000370232 pep:known-ccds chromosome:NCBI36:20:2587041:2592... 126 5e-29 ENSP00000359111 pep:known chromosome:NCBI36:X:152704416:15271303... 117 3e-26 ENSP00000359110 pep:known chromosome:NCBI36:X:152704418:15271316... 68 2e-11 >ENSP00000299518 pep:known-ccds chromosome:NCBI36:15:76228774:76249938:1 gene:ENSG00000166411 transcript:ENST00000299518 CCDS10297.1 Length = 366 Score = 176 bits (445), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 119/359 (33%), Positives = 182/359 (50%), Gaps = 37/359 (10%) Query: 40 VYRIAVIPGDGIGVEVMPEGLRALDAVSRRFGLRFAYEPIEWASCDYYAKHGQ----MMP 95 V + +IPGDGIG E+ ++ DA A PI+W + A G M+P Sbjct: 31 VQTVTLIPGDGIGPEISAAVMKIFDA---------AKAPIQWEERNVTAIQGPGGKWMIP 81 Query: 96 DDWKTQLSGMDALLFGAVGWPETVPDHISLWGSLIKFRREFDQYVNLRPARLFDGVPCPL 155 + K + L G + P H S+ + R+ FD Y N+RP +G P Sbjct: 82 SEAKESMDKNKMGLKGPLKTP-IAAGHPSMN---LLLRKTFDLYANVRPCVSIEGYKTPY 137 Query: 156 AGRKAGDIDFMIVRENTEGEYSAVGGTMFEGTEREFVVQQ-AVFTRHGTERVLKFAFELA 214 D++ + +RENTEGEYS + + +G VVQ + T ++R+ +FAFE A Sbjct: 138 T-----DVNIVTIRENTEGEYSGIEHVIVDG-----VVQSIKLITEGASKRIAEFAFEYA 187 Query: 215 QRRAK-RLTVATKSNGIAISMPWWDARAAEMAARYPDVTWDKQHIDILCARFVMQPDRFD 273 + + +T K+N + +S + + E+A D+ +++ ++D +C V P +FD Sbjct: 188 RNNHRSNVTAVHKANIMRMSDGLFLQKCREVAESCKDIKFNEMYLDTVCLNMVQDPSQFD 247 Query: 274 VVVASNLFGDILSDLGPACTGTIGIAPSANLNPERNFPSLFEPVHGSAPDIAGKHIANPI 333 V+V NL+GDILSDL G +G+ PS N+ N ++FE VHG+APDIAGK +ANP Sbjct: 248 VLVMPNLYGDILSDLCAGLIGGLGVTPSGNIGA--NGVAIFESVHGTAPDIAGKDMANPT 305 Query: 334 AMIWSAAMMVDFLGAGTGRAREAHDAIVAAIEHVLKHGPR-TRDMGGRASTREVGDAIV 391 A++ SA MM+ +G AR I AA +K G T+D+GG A + + I Sbjct: 306 ALLLSAVMMLRHMGLFDHAAR-----IEAACFATIKDGKSLTKDLGGNAKCSDFTEEIC 359 >ENSP00000370223 pep:known-ccds chromosome:NCBI36:20:2587041:2592862:-1 gene:ENSG00000101365 transcript:ENST00000380843 CCDS13032.1 Length = 385 Score = 129 bits (323), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 100/365 (27%), Positives = 179/365 (49%), Gaps = 38/365 (10%) Query: 38 EKVYRIAVIPGDGIGVEVMPEGLRALDAVSRRFGLRFAYEPIEWASCDYYAKHGQMMPDD 97 E + + ++PGDG+G E+M AV F + A P+E+ +++ Q M + Sbjct: 46 EGSFPVTMLPGDGVGPELM-------HAVKEVF--KAAAVPVEFQ--EHHLSEVQNMASE 94 Query: 98 WKTQ--LSGMDALLFGAVGWPETVPDHISLWGSL-IKFRREFDQYVNLRPARLFDGVPCP 154 K + LS M +G T ++ S ++ RR+ D + N+ + G Sbjct: 95 EKLEQVLSSMKENKVAIIGKIHTPMEYKGELASYDMRLRRKLDLFANVVHVKSLPGYMT- 153 Query: 155 LAGRKAGDIDFMIVRENTEGEYSAVGGTMFEGTEREFVVQQAVFTRHGTERVLKFAFELA 214 + ++D +I+RE TEGEYS ++ + R + + TR ++R+ KFAF+ A Sbjct: 154 ----RHNNLDLVIIREQTEGEYS----SLEHESARGVIECLKIVTRAKSQRIAKFAFDYA 205 Query: 215 QRRAK-RLTVATKSNGIAISMPWWDARAAEMAARYPDVTWDKQHIDILCARFVMQPDRFD 273 ++ + ++T K+N + + + E+A YP + ++ ID C + V P +FD Sbjct: 206 TKKGRGKVTAVHKANIMKLGDGLFLQCCEEVAELYPKIKFETMIIDNCCMQLVQNPYQFD 265 Query: 274 VVVASNLFGDILSDLGPACTGTIGIAPSANLNPERNFPSLFEP--VHGSAPDIAGKHIAN 331 V+V NL+G+I+ +L G G+ P + + E ++FE H A + G++IAN Sbjct: 266 VLVMPNLYGNIIDNLAAGLVGGAGVVPGESYSAEY---AVFETGARHPFAQAV-GRNIAN 321 Query: 332 PIAMIWSAAMMVDFLGAGTGRAREAHDAIV--AAIEHVLKHGPRTRDMGGRASTREVGDA 389 P AM+ SA+ M+ L E H +++ A + + RTRDMGG ++T + + Sbjct: 322 PTAMLLSASNMLRHLNL------EYHSSMIADAVKKVIKVGKVRTRDMGGYSTTTDFIKS 375 Query: 390 IVAHL 394 ++ HL Sbjct: 376 VIGHL 380 >ENSP00000370247 pep:known chromosome:NCBI36:20:2587040:2592835:-1 gene:ENSG00000101365 transcript:ENST00000380865 Length = 387 Score = 129 bits (323), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 100/365 (27%), Positives = 179/365 (49%), Gaps = 38/365 (10%) Query: 38 EKVYRIAVIPGDGIGVEVMPEGLRALDAVSRRFGLRFAYEPIEWASCDYYAKHGQMMPDD 97 E + + ++PGDG+G E+M AV F + A P+E+ +++ Q M + Sbjct: 46 EGSFPVTMLPGDGVGPELM-------HAVKEVF--KAAAVPVEFQ--EHHLSEVQNMASE 94 Query: 98 WKTQ--LSGMDALLFGAVGWPETVPDHISLWGSL-IKFRREFDQYVNLRPARLFDGVPCP 154 K + LS M +G T ++ S ++ RR+ D + N+ + G Sbjct: 95 EKLEQVLSSMKENKVAIIGKIHTPMEYKGELASYDMRLRRKLDLFANVVHVKSLPGYMT- 153 Query: 155 LAGRKAGDIDFMIVRENTEGEYSAVGGTMFEGTEREFVVQQAVFTRHGTERVLKFAFELA 214 + ++D +I+RE TEGEYS ++ + R + + TR ++R+ KFAF+ A Sbjct: 154 ----RHNNLDLVIIREQTEGEYS----SLEHESARGVIECLKIVTRAKSQRIAKFAFDYA 205 Query: 215 QRRAK-RLTVATKSNGIAISMPWWDARAAEMAARYPDVTWDKQHIDILCARFVMQPDRFD 273 ++ + ++T K+N + + + E+A YP + ++ ID C + V P +FD Sbjct: 206 TKKGRGKVTAVHKANIMKLGDGLFLQCCEEVAELYPKIKFETMIIDNCCMQLVQNPYQFD 265 Query: 274 VVVASNLFGDILSDLGPACTGTIGIAPSANLNPERNFPSLFEP--VHGSAPDIAGKHIAN 331 V+V NL+G+I+ +L G G+ P + + E ++FE H A + G++IAN Sbjct: 266 VLVMPNLYGNIIDNLAAGLVGGAGVVPGESYSAEY---AVFETGARHPFAQAV-GRNIAN 321 Query: 332 PIAMIWSAAMMVDFLGAGTGRAREAHDAIV--AAIEHVLKHGPRTRDMGGRASTREVGDA 389 P AM+ SA+ M+ L E H +++ A + + RTRDMGG ++T + + Sbjct: 322 PTAMLLSASNMLRHLNL------EYHSSMIADAVKKVIKVGKVRTRDMGGYSTTTDFIKS 375 Query: 390 IVAHL 394 ++ HL Sbjct: 376 VIGHL 380 >ENSP00000217901 pep:known-ccds chromosome:NCBI36:X:152704415:152713172:-1 gene:ENSG00000067829 transcript:ENST00000217901 CCDS14730.1 Length = 393 Score = 127 bits (320), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 100/360 (27%), Positives = 172/360 (47%), Gaps = 37/360 (10%) Query: 41 YRIAVIPGDGIGVEVMPEGLRALDAVSRRFGLRFAYEPIEWASCDYYAKHGQMMPDDWKT 100 + + +IPGDGIG E+M + + R A P+++ + + +D + Sbjct: 55 HTVTMIPGDGIGPELM---------LHVKSVFRHACVPVDFEEVHVSSNADE---EDIRN 102 Query: 101 QLSGMDALLFGAVGWPETV----PDHISLWGSLIKFRREFDQYVNLRPARLFDGVPCPLA 156 + + G ET P H S L R D Y N+ + GV Sbjct: 103 AIMAIRRNRVALKGNIETNHNLPPSHKSRNNIL---RTSLDLYANVIHCKSLPGVVT--- 156 Query: 157 GRKAGDIDFMIVRENTEGEYSAVGGTMFEGTEREFVVQQAVFTRHGTERVLKFAFELAQR 216 + DID +IVRENTEGEYS++ G V + T+ + R+ ++AF+LAQ Sbjct: 157 --RHKDIDILIVRENTEGEYSSLEHESVAG----VVESLKIITKAKSLRIAEYAFKLAQE 210 Query: 217 RA-KRLTVATKSNGIAISMPWWDARAAEMAARYPDVTWDKQHIDILCARFVMQPDRFDVV 275 K++T K+N + + + E+AARYP +T++ +D + V +P +FDV+ Sbjct: 211 SGRKKVTAVHKANIMKLGDGLFLQCCREVAARYPQITFENMIVDNTTMQLVSRPQQFDVM 270 Query: 276 VASNLFGDILSDLGPACTGTIGIAPSANLNPERNFPSLFEP-VHGSAPDIAGKHIANPIA 334 V NL+G+I++++ G G+ AN + ++FE + IA K+IANP A Sbjct: 271 VMPNLYGNIVNNVCAGLVGGPGLVAGANYG---HVYAVFETATRNTGKSIANKNIANPTA 327 Query: 335 MIWSAAMMVDFLGAGTGRAREAHDAIVAAIEHVLKHGPRTRDMGGRASTREVGDAIVAHL 394 + ++ MM+D L + A A++A++++ H P D+GG+ +T E ++ H+ Sbjct: 328 TLLASCMMLDHLKLHS-YATSIRKAVLASMDNENMHTP---DIGGQGTTSEAIQDVIRHI 383 >ENSP00000370232 pep:known-ccds chromosome:NCBI36:20:2587041:2592862:-1 gene:ENSG00000101365 transcript:ENST00000380851 CCDS13031.1 Length = 383 Score = 126 bits (316), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 100/365 (27%), Positives = 178/365 (48%), Gaps = 38/365 (10%) Query: 38 EKVYRIAVIPGDGIGVEVMPEGLRALDAVSRRFGLRFAYEPIEWASCDYYAKHGQMMPDD 97 E + + ++PGDG+G E+M AV F + A P+E+ +++ Q M + Sbjct: 46 EGSFPVTMLPGDGVGPELM-------HAVKEVF--KAAAVPVEFQ--EHHLSEVQNMASE 94 Query: 98 WKTQ--LSGMDALLFGAVGWPETVPDHISLWGSL-IKFRREFDQYVNLRPARLFDGVPCP 154 K + LS M +G T ++ S ++ RR+ D + N+ + G Sbjct: 95 EKLEQVLSSMKENKVAIIGKIHTPMEYKGELASYDMRLRRKLDLFANVVHVKSLPGYMT- 153 Query: 155 LAGRKAGDIDFMIVRENTEGEYSAVGGTMFEGTEREFVVQQAVFTRHGTERVLKFAFELA 214 + ++D +I+RE TEGEYS ++ + R + + TR ++R+ KFAF+ A Sbjct: 154 ----RHNNLDLVIIREQTEGEYS----SLEHESARGVIECLKIVTRAKSQRIAKFAFDYA 205 Query: 215 QRRAK-RLTVATKSNGIAISMPWWDARAAEMAARYPDVTWDKQHIDILCARFVMQPDRFD 273 ++ + ++T K+N + + + E+A YP + ++ ID C + V P +FD Sbjct: 206 TKKGRGKVTAVHKANIMKLGDGLFLQCCEEVAELYPKIKFETMIIDNCCMQLVQNPYQFD 265 Query: 274 VVVASNLFGDILSDLGPACTGTIGIAPSANLNPERNFPSLFEP--VHGSAPDIAGKHIAN 331 V+V NL+G+I+ +L G G+ P + + E ++FE H A + G++IAN Sbjct: 266 VLVMPNLYGNIIDNLAAGLVGGAGVVPGESYSAEY---AVFETGARHPFAQAV-GRNIAN 321 Query: 332 PIAMIWSAAMMVDFLGAGTGRAREAHDAIV--AAIEHVLKHGPRTRDMGGRASTREVGDA 389 P AM+ SA+ M+ L E H +++ A + + RT DMGG A+ + +A Sbjct: 322 PTAMLLSASNMLRHLNL------EYHSSMIADAVKKVIKVGKVRTSDMGGYATCHDFTEA 375 Query: 390 IVAHL 394 ++A L Sbjct: 376 VIAAL 380 >ENSP00000359111 pep:known chromosome:NCBI36:X:152704416:152713030:-1 gene:ENSG00000067829 transcript:ENST00000370093 Length = 340 Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 89/312 (28%), Positives = 148/312 (47%), Gaps = 33/312 (10%) Query: 41 YRIAVIPGDGIGVEVMPEGLRALDAVSRRFGLRFAYEPIEWASCDYYAKHGQMMPDDWKT 100 + + +IPGDGIG E+M + + R A P+++ + + +D + Sbjct: 55 HTVTMIPGDGIGPELM---------LHVKSVFRHACVPVDFEEVHVSSNADE---EDIRN 102 Query: 101 QLSGMDALLFGAVGWPETV----PDHISLWGSLIKFRREFDQYVNLRPARLFDGVPCPLA 156 + + G ET P H S L R D Y N+ + GV Sbjct: 103 AIMAIRRNRVALKGNIETNHNLPPSHKSRNNIL---RTSLDLYANVIHCKSLPGVV---- 155 Query: 157 GRKAGDIDFMIVRENTEGEYSAVGGTMFEGTEREFVVQQAVFTRHGTERVLKFAFELAQR 216 + DID +IVRENTEGEYS++ G V + T+ + R+ ++AF+LAQ Sbjct: 156 -TRHKDIDILIVRENTEGEYSSLEHESVAGV----VESLKIITKAKSLRIAEYAFKLAQE 210 Query: 217 RA-KRLTVATKSNGIAISMPWWDARAAEMAARYPDVTWDKQHIDILCARFVMQPDRFDVV 275 K++T K+N + + + E+AARYP +T++ +D + V +P +FDV+ Sbjct: 211 SGRKKVTAVHKANIMKLGDGLFLQCCREVAARYPQITFENMIVDNTTMQLVSRPQQFDVM 270 Query: 276 VASNLFGDILSDLGPACTGTIGIAPSANLNPERNFPSLFEP-VHGSAPDIAGKHIANPIA 334 V NL+G+I++++ G G+ AN + ++FE + IA K+IANP A Sbjct: 271 VMPNLYGNIVNNVCAGLVGGPGLVAGANYG---HVYAVFETATRNTGKSIANKNIANPTA 327 Query: 335 MIWSAAMMVDFL 346 + ++ MM+D L Sbjct: 328 TLLASCMMLDHL 339 >ENSP00000359110 pep:known chromosome:NCBI36:X:152704418:152713161:-1 gene:ENSG00000067829 transcript:ENST00000370092 Length = 174 Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 71/125 (56%), Gaps = 5/125 (4%) Query: 243 EMAARYPDVTWDKQHIDILCARFVMQPDRFDVVVASNLFGDILSDLGPACTGTIGIAPSA 302 E+AARYP +T++ +D + V +P +FDV+V NL+G+I++++ G G+ A Sbjct: 32 EVAARYPQITFENMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCAGLVGGPGLVAGA 91 Query: 303 NLNPERNFPSLFEP-VHGSAPDIAGKHIANPIAMIWSAAMMVDFLGAGTGRAREAHDAIV 361 N + ++FE + IA K+IANP A + ++ MM+D L + A A++ Sbjct: 92 NYG---HVYAVFETATRNTGKSIANKNIANPTATLLASCMMLDHLKLHS-YATSIRKAVL 147 Query: 362 AAIEH 366 A++++ Sbjct: 148 ASMDN 152 BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BMA10247_A0015[320389] (305 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BMA10247_A0016[320389] (37 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BMA10247_A0017[320389] (225 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BMA10247_A0018[320389] (207 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ENSP00000248935 pep:known-ccds chromosome:NCBI36:22:22706142:227... 66 3e-11 ENSP00000374050 pep:known chromosome:NCBI36:22:22670745:22677253... 65 4e-11 ENSP00000215780 pep:known-ccds chromosome:NCBI36:22:22652324:226... 59 4e-09 ENSP00000290765 pep:known-ccds chromosome:NCBI36:22:22629609:226... 59 4e-09 ENSP00000331901 pep:known chromosome:NCBI36:11:62083651:62106622... 58 9e-09 ENSP00000367258 pep:known chromosome:NCBI36:11:62083651:62096990... 58 9e-09 >ENSP00000248935 pep:known-ccds chromosome:NCBI36:22:22706142:22714271:-1 gene:ENSG00000184674 transcript:ENST00000248935 CCDS13822.1 Length = 240 Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 44/127 (34%), Positives = 62/127 (48%), Gaps = 8/127 (6%) Query: 44 FLALNPNGLVPVLVDGDFVLWESNAIIRYLANRYGGA-HLYPVEPHARARVDQWLDWQTT 102 F +NP VP L DGDF L ES AI+ YL +Y + YP + ARARVD++L WQ T Sbjct: 45 FAQVNPLKKVPALKDGDFTLTESVAILLYLTRKYKVPDYWYPQDLQARARVDEYLAWQHT 104 Query: 103 ALNRA-----WSYAFLALVRDAPDHGDTARIRASCESWARHMAILDAQLGTTGAFVTGAD 157 L R+ W + P T + A+ + +L+ + AF+TG Sbjct: 105 TLRRSCLRALWHKVMFPVFLGEPVSPQT--LAATLAELDVTLQLLEDKFLQNKAFLTGPH 162 Query: 158 YTLADVA 164 +LAD+ Sbjct: 163 ISLADLV 169 >ENSP00000374050 pep:known chromosome:NCBI36:22:22670745:22677253:-1 gene:ENSG00000185831 transcript:ENST00000389399 Length = 239 Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 64/129 (49%), Gaps = 4/129 (3%) Query: 40 QTPEFLALNPNGLVPVLVDGDFVLWESNAIIRYLANRYGG-AHLYPVEPHARARVDQWLD 98 + E++ +NP +P L DG F+L ES AI+ YL +Y +H P + HARARVD+++ Sbjct: 41 HSKEYIDINPLRKLPSLKDGKFILSESAAILYYLCRKYSAPSHWCPPDLHARARVDEFVA 100 Query: 99 WQTTALN---RAWSYAFLALVRDAPDHGDTARIRASCESWARHMAILDAQLGTTGAFVTG 155 WQ TA + + L + + + ++ + E + + + F+TG Sbjct: 101 WQHTAFQLPMKKIVWLKLLIPKITGEEVSAEKMEHAVEEVKNSLQLFEEYFLQDKMFITG 160 Query: 156 ADYTLADVA 164 +LAD+ Sbjct: 161 NQISLADLV 169 >ENSP00000215780 pep:known-ccds chromosome:NCBI36:22:22652324:22656098:1 gene:ENSG00000099984 transcript:ENST00000215780 CCDS13821.1 Length = 244 Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 13/132 (9%) Query: 40 QTPEFLALNPNGLVPVLVDGDFVLWESNAIIRYLANRYGGA-HLYPVEPHARARVDQWLD 98 ++ EFL +N G +P L DGDF+L ES+AI+ YL+ +Y H YP + ARARV ++L Sbjct: 41 KSKEFLQINSLGKLPTLKDGDFILTESSAILIYLSCKYQTPDHWYPSDLQARARVHEYLG 100 Query: 99 WQTTALNRAWSYAFLALVRDAPDHGDTARIRASCESWARHMAILDAQLG-------TTGA 151 W + + V G ++ E R+ +D L Sbjct: 101 WHADCIRGTFGIPLWVQVL-----GPLIGVQVPKEKVERNRTAMDQALQWLEDKFLGDRP 155 Query: 152 FVTGADYTLADV 163 F+ G TLAD+ Sbjct: 156 FLAGQQVTLADL 167 >ENSP00000290765 pep:known-ccds chromosome:NCBI36:22:22629609:22633383:-1 gene:ENSG00000133433 transcript:ENST00000290765 CCDS33617.1 Length = 244 Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 42/67 (62%), Gaps = 1/67 (1%) Query: 40 QTPEFLALNPNGLVPVLVDGDFVLWESNAIIRYLANRYGGA-HLYPVEPHARARVDQWLD 98 ++ EFL +N G +P L DGDF+L ES+AI+ YL+ +Y H YP + ARARV ++L Sbjct: 41 KSKEFLQINSLGKLPTLKDGDFILTESSAILIYLSCKYQTPDHWYPSDLQARARVHEYLG 100 Query: 99 WQTTALN 105 W + Sbjct: 101 WHADCIR 107 >ENSP00000331901 pep:known chromosome:NCBI36:11:62083651:62106622:-1 gene:ENSG00000186676 transcript:ENST00000329251 Length = 435 Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 75/172 (43%), Gaps = 33/172 (19%) Query: 37 RSTQTPEFLALNPNGLVPVLV-DGDFVLWESNAIIRYLANRYGGAHLYPVEPHARARVDQ 95 ++ +TPEFL P G VP D F ++ESNAI Y++N L P A A+V Q Sbjct: 40 QTNRTPEFLRKFPAGKVPAFEGDDGFCVFESNAIAYYVSNE----ELRGSTPEAAAQVVQ 95 Query: 96 WLDWQTTAL---NRAWSYAFLALVRDAPDHGDTARIRASCESWARHMAILDAQLGTTGAF 152 W+ + + + W + L ++ H + + E R + +LDA L T F Sbjct: 96 WVSFADSDIVPPASTWVFPTLGIM-----HHNKQATENAKEEVRRILGLLDAYLKTR-TF 149 Query: 153 VTGADYTLADVALGLSI-------------------NRWLRTPFDKPDFPAV 185 + G TLAD+ + ++ NRW T ++P F AV Sbjct: 150 LVGERVTLADITVVCTLLWLYKQVLEPSFRQAFPNTNRWFLTCINQPQFRAV 201 >ENSP00000367258 pep:known chromosome:NCBI36:11:62083651:62096990:-1 gene:ENSG00000186676 transcript:ENST00000378019 Length = 436 Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 75/172 (43%), Gaps = 33/172 (19%) Query: 37 RSTQTPEFLALNPNGLVPVLV-DGDFVLWESNAIIRYLANRYGGAHLYPVEPHARARVDQ 95 ++ +TPEFL P G VP D F ++ESNAI Y++N L P A A+V Q Sbjct: 41 QTNRTPEFLRKFPAGKVPAFEGDDGFCVFESNAIAYYVSNE----ELRGSTPEAAAQVVQ 96 Query: 96 WLDWQTTAL---NRAWSYAFLALVRDAPDHGDTARIRASCESWARHMAILDAQLGTTGAF 152 W+ + + + W + L ++ H + + E R + +LDA L T F Sbjct: 97 WVSFADSDIVPPASTWVFPTLGIM-----HHNKQATENAKEEVRRILGLLDAYLKTR-TF 150 Query: 153 VTGADYTLADVALGLSI-------------------NRWLRTPFDKPDFPAV 185 + G TLAD+ + ++ NRW T ++P F AV Sbjct: 151 LVGERVTLADITVVCTLLWLYKQVLEPSFRQAFPNTNRWFLTCINQPQFRAV 202 BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BMA10247_A0019[320389] (177 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BMA10247_A0020[320389] (412 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BMA10247_A0021[320389] (261 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ENSP00000363794 pep:known-ccds chromosome:NCBI36:6:33280397:3328... 92 6e-19 ENSP00000230236 pep:known chromosome:NCBI36:c6_QBL:33244098:3324... 92 6e-19 ENSP00000303525 pep:known-ccds chromosome:NCBI36:4:170145319:170... 87 1e-17 ENSP00000353917 pep:novel chromosome:NCBI36:4:170145319:17016799... 86 4e-17 ENSP00000256216 pep:known-ccds chromosome:NCBI36:5:118816103:118... 82 8e-16 ENSP00000326219 pep:known-ccds chromosome:NCBI36:14:23492805:235... 81 1e-15 ENSP00000296522 pep:known-ccds chromosome:NCBI36:4:175647958:175... 80 2e-15 ENSP00000372558 pep:novel chromosome:NCBI36:c6_COX:33241150:3324... 77 3e-14 ENSP00000373629 pep:known-ccds chromosome:NCBI36:2:216612243:216... 76 4e-14 ENSP00000373632 pep:known-ccds chromosome:NCBI36:2:216612243:216... 76 4e-14 ENSP00000320352 pep:known-ccds chromosome:NCBI36:17:20970850:210... 75 5e-14 ENSP00000351035 pep:known-ccds chromosome:NCBI36:4:88476790:8853... 75 6e-14 ENSP00000333300 pep:known-ccds chromosome:NCBI36:4:88443965:8846... 75 9e-14 ENSP00000261494 pep:known chromosome:NCBI36:17:20970850:21035428... 75 9e-14 ENSP00000296424 pep:known-ccds chromosome:NCBI36:4:104218232:104... 74 2e-13 ENSP00000265322 pep:known chromosome:NCBI36:2:216611357:21665470... 73 2e-13 ENSP00000220764 pep:known-ccds chromosome:NCBI36:8:91082756:9113... 69 7e-12 ENSP00000327975 pep:known chromosome:NCBI36:17:9615536:9635371:-... 68 8e-12 ENSP00000219481 pep:known-ccds chromosome:NCBI36:16:391827:40246... 67 2e-11 ENSP00000250383 pep:known-ccds chromosome:NCBI36:14:23177081:231... 65 9e-11 ENSP00000296521 pep:known chromosome:NCBI36:4:175647958:17568021... 65 1e-10 ENSP00000344674 pep:known chromosome:NCBI36:14:23177081:23184686... 64 1e-10 ENSP00000168216 pep:known-ccds chromosome:NCBI36:X:53474931:5347... 64 2e-10 ENSP00000288111 pep:known-ccds chromosome:NCBI36:14:23829649:238... 61 1e-09 ENSP00000171214 pep:known-ccds chromosome:NCBI36:19:9984925:9993... 61 1e-09 ENSP00000353759 pep:known chromosome:NCBI36:14:59681255:59701900... 60 2e-09 ENSP00000216500 pep:known-ccds chromosome:NCBI36:14:59681255:597... 60 2e-09 ENSP00000262542 pep:known chromosome:NCBI36:9:114196641:11427450... 60 2e-09 ENSP00000334801 pep:known-ccds chromosome:NCBI36:14:23527959:235... 59 7e-09 ENSP00000263278 pep:known-ccds chromosome:NCBI36:19:54008091:540... 59 7e-09 ENSP00000307607 pep:known-ccds chromosome:NCBI36:8:57375122:5739... 58 1e-08 ENSP00000303356 pep:known-ccds chromosome:NCBI36:17:77587046:775... 57 2e-08 ENSP00000312939 pep:known-ccds chromosome:NCBI36:18:59148813:591... 57 2e-08 ENSP00000251312 pep:known chromosome:NCBI36:17:32022442:32031324... 55 5e-08 ENSP00000372203 pep:known chromosome:NCBI36:14:23527959:23545444... 54 1e-07 ENSP00000364453 pep:known-ccds chromosome:NCBI36:X:53474931:5347... 50 2e-06 ENSP00000225929 pep:known-ccds chromosome:NCBI36:17:37954758:379... 47 2e-05 ENSP00000364412 pep:known-ccds chromosome:NCBI36:9:98037409:9810... 47 2e-05 ENSP00000368173 pep:known chromosome:NCBI36:17:24248928:24254215... 47 3e-05 >ENSP00000363794 pep:known-ccds chromosome:NCBI36:6:33280397:33282586:1 gene:ENSG00000204228 transcript:ENST00000374662 CCDS4769.1 Length = 261 Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 71/267 (26%), Positives = 124/267 (46%), Gaps = 20/267 (7%) Query: 2 SNLNGKTAIVTGAASGIGKEIXXXXXXXXXXXXXXXXNQDGANAVAELIEQAG------- 54 + L A+VTGA SGIG+ + ++ A L+ G Sbjct: 7 NRLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPR 66 Query: 55 GRAIGVAMDVTNEDAVNAGIDKVAQTFG-SVDILVSNAGIQIVNPIENYAFADWKKMQAI 113 G DV+ A +++V F ++VS AGI + + + DW K+ A+ Sbjct: 67 GNHAAFQADVSEARAARCLLEQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAV 126 Query: 114 HVDGAFLTTKAALKHMYKDDRGGVVIYMGSVHSHEASPLKSAYVTAKHGLLGLARVLAKE 173 ++ G FL T+AA + + + G +I + S+ + ++ Y +K G++GL + A+E Sbjct: 127 NLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKVGNVGQTNYAASKAGVIGLTQTAARE 186 Query: 174 GAKHNVRSHVVCPGFVRTPLVDKQIPEQAKELGISEEEVVKKVMLGQTVDGVFTTVEDVA 233 +H +R + V PGF+ TP+ K +P++ +++ + + +G D EDVA Sbjct: 187 LGRHGIRCNSVLPGFIATPMTQK-VPQKVV------DKITEMIPMGHLGD-----PEDVA 234 Query: 234 KTVLFLSAFPSAALTGQSFVVSHGWFM 260 V FL++ S +TG S V+ G FM Sbjct: 235 DVVAFLASEDSGYITGTSVEVTGGLFM 261 >ENSP00000230236 pep:known chromosome:NCBI36:c6_QBL:33244098:33246290:1 gene:ENSG00000112474 transcript:ENST00000230236 Length = 261 Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 71/267 (26%), Positives = 124/267 (46%), Gaps = 20/267 (7%) Query: 2 SNLNGKTAIVTGAASGIGKEIXXXXXXXXXXXXXXXXNQDGANAVAELIEQAG------- 54 + L A+VTGA SGIG+ + ++ A L+ G Sbjct: 7 NRLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPR 66 Query: 55 GRAIGVAMDVTNEDAVNAGIDKVAQTFG-SVDILVSNAGIQIVNPIENYAFADWKKMQAI 113 G DV+ A +++V F ++VS AGI + + + DW K+ A+ Sbjct: 67 GNHAAFQADVSEARAARCLLEQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAV 126 Query: 114 HVDGAFLTTKAALKHMYKDDRGGVVIYMGSVHSHEASPLKSAYVTAKHGLLGLARVLAKE 173 ++ G FL T+AA + + + G +I + S+ + ++ Y +K G++GL + A+E Sbjct: 127 NLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKVGNVGQTNYAASKAGVIGLTQTAARE 186 Query: 174 GAKHNVRSHVVCPGFVRTPLVDKQIPEQAKELGISEEEVVKKVMLGQTVDGVFTTVEDVA 233 +H +R + V PGF+ TP+ K +P++ +++ + + +G D EDVA Sbjct: 187 LGRHGIRCNSVLPGFIATPMTQK-VPQKVV------DKITEMIPMGHLGD-----PEDVA 234 Query: 234 KTVLFLSAFPSAALTGQSFVVSHGWFM 260 V FL++ S +TG S V+ G FM Sbjct: 235 DVVAFLASEDSGYITGTSVEVTGGLFM 261 >ENSP00000303525 pep:known-ccds chromosome:NCBI36:4:170145319:170167997:-1 gene:ENSG00000145439 transcript:ENST00000306193 CCDS3812.1 Length = 237 Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 73/252 (28%), Positives = 114/252 (45%), Gaps = 21/252 (8%) Query: 7 KTAIVTGAASGIGKEIXXXXXXXXXXXXXXXXNQDGANAVAELIEQAGGRAIGVAMDVTN 66 K V G + GIG+ + N +GA A A GG + + DV Sbjct: 3 KVCAVFGGSRGIGRAVAQLMARKGYRLAVIARNLEGAKAAAG---DLGGDHLAFSCDVAK 59 Query: 67 EDAVNAGIDKVAQTFGSVDILVSNAGIQIVNPIENYAFADWKKMQAIHVDGAFLTTKAAL 126 E V +++ + G V+ LV+ AGI + D ++ G+ LT KAA+ Sbjct: 60 EHDVQNTFEELEKHLGRVNFLVNAAGINRDGLLVRTKTEDMVSQLHTNLLGSMLTCKAAM 119 Query: 127 KHMYKDDRGGVVIYMGSVHSHEASPLKSAYVTAKHGLLGLARVLAKEGAKHNVRSHVVCP 186 + M + +GG ++ +GS+ + + +S Y +K GL+G +R LAKE A+ +R +VV P Sbjct: 120 RTMIQQ-QGGSIVNVGSIVGLKGNSGQSVYSASKGGLVGFSRALAKEVARKKIRVNVVAP 178 Query: 187 GFVRTPLVDKQIPEQAKELGISEEEVVKKVMLGQTVDGVFTTVEDVAKTVLFLSAFPSAA 246 GFV T + + EE + K + LG+ F +VA V+FL S Sbjct: 179 GFVHTDMTKD----------LKEEHLKKNIPLGR-----FGETIEVAHAVVFL--LESPY 221 Query: 247 LTGQSFVVSHGW 258 +TG VV G Sbjct: 222 ITGHVLVVDGGL 233 >ENSP00000353917 pep:novel chromosome:NCBI36:4:170145319:170167997:-1 gene:ENSG00000145439 transcript:ENST00000360695 Length = 237 Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 72/252 (28%), Positives = 113/252 (44%), Gaps = 21/252 (8%) Query: 7 KTAIVTGAASGIGKEIXXXXXXXXXXXXXXXXNQDGANAVAELIEQAGGRAIGVAMDVTN 66 K V G + GIG+ + N +GA A A GG + + DV Sbjct: 3 KVCAVFGGSRGIGRAVAQLMARKGYRLAVIARNLEGAKAAAG---DLGGDHLAFSCDVAK 59 Query: 67 EDAVNAGIDKVAQTFGSVDILVSNAGIQIVNPIENYAFADWKKMQAIHVDGAFLTTKAAL 126 E V +++ + G V+ LV+ AGI + D ++ G+ LT KAA+ Sbjct: 60 EHDVQNTFEELEKHLGRVNFLVNAAGINRDGLLVRTKTEDMVSQLHTNLLGSMLTCKAAM 119 Query: 127 KHMYKDDRGGVVIYMGSVHSHEASPLKSAYVTAKHGLLGLARVLAKEGAKHNVRSHVVCP 186 + M + +GG ++ +G + + + +S Y +K GL+G +R LAKE A+ +R +VV P Sbjct: 120 RTMIQQ-QGGSIVNVGDIVGLKGNSGQSVYSASKGGLVGFSRALAKEVARKKIRVNVVAP 178 Query: 187 GFVRTPLVDKQIPEQAKELGISEEEVVKKVMLGQTVDGVFTTVEDVAKTVLFLSAFPSAA 246 GFV T + + EE + K + LG+ F +VA V+FL S Sbjct: 179 GFVHTDMTKD----------LKEEHLKKNIPLGR-----FGETIEVAHAVVFL--LESPY 221 Query: 247 LTGQSFVVSHGW 258 +TG VV G Sbjct: 222 ITGHVLVVDGGL 233 >ENSP00000256216 pep:known-ccds chromosome:NCBI36:5:118816103:118905926:1 gene:ENSG00000133835 transcript:ENST00000256216 CCDS4126.1 Length = 736 Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 61/197 (30%), Positives = 92/197 (46%), Gaps = 21/197 (10%) Query: 3 NLNGKTAIVTGAASGIGKEIXXXXXXXXXXXXXXXXNQD---------GANAVAELIEQA 53 +G+ +VTGA +G+G+ D A+ V E I + Sbjct: 6 RFDGRVVLVTGAGAGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSLAADKVVEEIRRR 65 Query: 54 GGRAIGVAMDVTNEDAVNAGIDKVAQT----FGSVDILVSNAGIQIVNPIENYAFADWKK 109 GG+A V N D+V G +KV +T FG +D++V+NAGI + DW Sbjct: 66 GGKA------VANYDSVEEG-EKVVKTALDAFGRIDVVVNNAGILRDRSFARISDEDWDI 118 Query: 110 MQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMGSVHSHEASPLKSAYVTAKHGLLGLARV 169 + +H+ G+F T+AA +HM K + G +I S + ++ Y AK GLLGLA Sbjct: 119 IHRVHLRGSFQVTRAAWEHM-KKQKYGRIIMTSSASGIYGNFGQANYSAAKLGLLGLANS 177 Query: 170 LAKEGAKHNVRSHVVCP 186 LA EG K N+ + + P Sbjct: 178 LAIEGRKSNIHCNTIAP 194 >ENSP00000326219 pep:known-ccds chromosome:NCBI36:14:23492805:23508326:1 gene:ENSG00000157326 transcript:ENST00000313250 CCDS9605.1 Length = 278 Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 73/258 (28%), Positives = 109/258 (42%), Gaps = 18/258 (6%) Query: 4 LNGKTAIVTGAASGIGKEIXXXXXXXXXXXXXXXXNQDGANAVAELIEQAGGRAIGVAMD 63 L K A+VT + GIG I Q + ++ G G Sbjct: 30 LANKVALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDQAVATLQGEGLSVTGTVCH 89 Query: 64 VTNEDAVNAGIDKVAQTFGSVDILVSNAGIQIVNP----IENYAFADWKKMQAIHVDGAF 119 V + + + G +DILVSNA VNP I + W K I+V Sbjct: 90 VGKAEDRERLVATAVKLHGGIDILVSNAA---VNPFFGSIMDVTEEVWDKTLDINVKAPA 146 Query: 120 LTTKAALKHMYKDDRGGVVIYMGSVHSHEASPLKSAYVTAKHGLLGLARVLAKEGAKHNV 179 L TKA + M K GG V+ + S+ + SP S Y +K LLGL + LA E A N+ Sbjct: 147 LMTKAVVPEMEKRG-GGSVVIVSSIAAFSPSPGFSPYNVSKTALLGLTKTLAIELAPRNI 205 Query: 180 RSHVVCPGFVRTPLVDKQIPEQAKELGISEEEVVKKVMLGQTVDGVFTTVEDVAKTVLFL 239 R + + PG ++T ++ KE + E +++ LG+ ED A V FL Sbjct: 206 RVNCLAPGLIKTSFSRMLWMDKEKEESMKETLRIRR--LGEP--------EDCAGIVSFL 255 Query: 240 SAFPSAALTGQSFVVSHG 257 + ++ +TG++ VV G Sbjct: 256 CSEDASYITGETVVVGGG 273 >ENSP00000296522 pep:known-ccds chromosome:NCBI36:4:175647958:175680213:-1 gene:ENSG00000164120 transcript:ENST00000296522 CCDS3821.1 Length = 266 Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 70/243 (28%), Positives = 110/243 (45%), Gaps = 21/243 (8%) Query: 4 LNGKTAIVTGAASGIGKEIXXXXXXXXXXXXXXXXN-QDGANAVAELIEQ-AGGRAIGVA 61 +NGK A+VTGAA GIG+ N + G A L EQ + + + Sbjct: 3 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALDEQFEPQKTLFIQ 62 Query: 62 MDVTNEDAVNAGIDKVAQTFGSVDILVSNAGIQIVNPIENYAFADWKKMQAIHVDGAFLT 121 DV ++ + KV FG +DILV+NAG VN +N W+K I++ Sbjct: 63 CDVADQQQLRDTFRKVVDHFGRLDILVNNAG---VNNEKN-----WEKTLQINLVSVISG 114 Query: 122 TKAALKHMYKDD--RGGVVIYMGSVHSHEASPLKSAYVTAKHGLLGLAR--VLAKEGAKH 177 T L +M K + GG++I M S+ + Y +KHG++G R LA Sbjct: 115 TYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTRSAALAANLMNS 174 Query: 178 NVRSHVVCPGFVRTPLVDKQIPEQAKELGISEEEVVKKVMLGQTV-------DGVFTTVE 230 VR + +CPGFV T +++ E+ I ++ +K ++ + +G+ T +E Sbjct: 175 GVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIKDMIKYYGILDPPLIANGLITLIE 234 Query: 231 DVA 233 D A Sbjct: 235 DDA 237 >ENSP00000372558 pep:novel chromosome:NCBI36:c6_COX:33241150:33242652:1 gene:ENSG00000206216 transcript:ENST00000383080 Length = 231 Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 54/208 (25%), Positives = 97/208 (46%), Gaps = 9/208 (4%) Query: 2 SNLNGKTAIVTGAASGIGKEIXXXXXXXXXXXXXXXXNQDGANAVAELIEQAG------- 54 + L A+VTGA SGIG+ + ++ A L+ G Sbjct: 7 NRLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPR 66 Query: 55 GRAIGVAMDVTNEDAVNAGIDKVAQTFG-SVDILVSNAGIQIVNPIENYAFADWKKMQAI 113 G DV+ A +++V F ++VS AGI + + + DW K+ A+ Sbjct: 67 GNHAAFQADVSEARAARCLLEQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAV 126 Query: 114 HVDGAFLTTKAALKHMYKDDRGGVVIYMGSVHSHEASPLKSAYVTAKHGLLGLARVLAKE 173 ++ G FL T+AA + + + G +I + S+ + ++ Y +K G++GL + A+E Sbjct: 127 NLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKVGNVGQTNYAASKAGVIGLTQTAARE 186 Query: 174 GAKHNVRSHVVCPGFVRTPLVDKQIPEQ 201 +H +R + V PGF+ TP+ K +P++ Sbjct: 187 LGRHGIRCNSVLPGFIATPMTQK-VPQK 213 >ENSP00000373629 pep:known-ccds chromosome:NCBI36:2:216612243:216654709:-1 gene:ENSG00000115425 transcript:ENST00000388977 CCDS33375.1 Length = 303 Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 70/268 (26%), Positives = 110/268 (41%), Gaps = 33/268 (12%) Query: 4 LNGKTAIVTGAASGIGKEIXXXXXXXXXXXXXXXXNQDGANAVAE-----LIEQAGGRAI 58 L G+ AIVTG A+GIGK I + + A+ L R I Sbjct: 16 LQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVI 75 Query: 59 GVAMDVTNEDAVNAGIDKVAQTFGSVDILVSNAGIQIVNPIENYAFADWKKMQAIHVDGA 118 + ++ NE+ VN + TFG ++ LV+N G Q ++P E+ + W + ++ G Sbjct: 76 PIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGT 135 Query: 119 FLTTKAALKHMYKDDRGGVVIYMGSVHSHEASPLKSAYVTAKHGLLGLARVLAKEGAKHN 178 F KA K+ G +V + V + PL A+ G+ L + LA E A Sbjct: 136 FYMCKAVYSSWMKEHGGSIVNII--VPTKAGFPLAVHSGAARAGVYNLTKSLALEWACSG 193 Query: 179 VRSHVVCPGFVRTPLVDKQIPEQAKELGISEEEVVKKVMLGQT-VDGVFTTV-------- 229 +R + V PG + S+ V GQ+ +G F + Sbjct: 194 IRINCVAPGVI-----------------YSQTAVENYGSWGQSFFEGSFQKIPAKRIGVP 236 Query: 230 EDVAKTVLFLSAFPSAALTGQSFVVSHG 257 E+V+ V FL + ++ +TGQS V G Sbjct: 237 EEVSSVVCFLLSPAASFITGQSVDVDGG 264 >ENSP00000373632 pep:known-ccds chromosome:NCBI36:2:216612243:216654709:-1 gene:ENSG00000115425 transcript:ENST00000388980 CCDS33375.1 Length = 303 Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 70/268 (26%), Positives = 110/268 (41%), Gaps = 33/268 (12%) Query: 4 LNGKTAIVTGAASGIGKEIXXXXXXXXXXXXXXXXNQDGANAVAE-----LIEQAGGRAI 58 L G+ AIVTG A+GIGK I + + A+ L R I Sbjct: 16 LQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVI 75 Query: 59 GVAMDVTNEDAVNAGIDKVAQTFGSVDILVSNAGIQIVNPIENYAFADWKKMQAIHVDGA 118 + ++ NE+ VN + TFG ++ LV+N G Q ++P E+ + W + ++ G Sbjct: 76 PIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGT 135 Query: 119 FLTTKAALKHMYKDDRGGVVIYMGSVHSHEASPLKSAYVTAKHGLLGLARVLAKEGAKHN 178 F KA K+ G +V + V + PL A+ G+ L + LA E A Sbjct: 136 FYMCKAVYSSWMKEHGGSIVNII--VPTKAGFPLAVHSGAARAGVYNLTKSLALEWACSG 193 Query: 179 VRSHVVCPGFVRTPLVDKQIPEQAKELGISEEEVVKKVMLGQT-VDGVFTTV-------- 229 +R + V PG + S+ V GQ+ +G F + Sbjct: 194 IRINCVAPGVI-----------------YSQTAVENYGSWGQSFFEGSFQKIPAKRIGVP 236 Query: 230 EDVAKTVLFLSAFPSAALTGQSFVVSHG 257 E+V+ V FL + ++ +TGQS V G Sbjct: 237 EEVSSVVCFLLSPAASFITGQSVDVDGG 264 >ENSP00000320352 pep:known-ccds chromosome:NCBI36:17:20970850:21035428:1 gene:ENSG00000109016 transcript:ENST00000346603 CCDS11215.1 Length = 325 Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 65/253 (25%), Positives = 100/253 (39%), Gaps = 13/253 (5%) Query: 4 LNGKTAIVTGAASGIGKEIXXXXXXXXXXXXXXXXNQDGANAVAELIEQAGG-------- 55 L ++TGA SG+GKE N A+ ELI + Sbjct: 50 LRNAVVVITGATSGLGKECAKVFYAAGAKLVLCGRN---GGALEELIRELTASHATKVQT 106 Query: 56 -RAIGVAMDVTNEDAVNAGIDKVAQTFGSVDILVSNAGIQIVNPIENYAFADWKKMQAIH 114 + V D+T+ A+ A ++ Q FG VDILV+NAGI I + K++ + Sbjct: 107 HKPYLVTFDLTDSGAIVAAAAEILQCFGYVDILVNNAGISYRGTIMDTTVDVDKRVMETN 166 Query: 115 VDGAFLTTKAALKHMYKDDRGGVVIYMGSVHSHEASPLKSAYVTAKHGLLGLARVLAKEG 174 G TKA L M K R G ++ + S+ + P +SAY +KH L E Sbjct: 167 YFGPVALTKALLPSMIK-RRQGHIVAISSIQGKMSIPFRSAYAASKHATQAFFDCLRAEM 225 Query: 175 AKHNVRSHVVCPGFVRTPLVDKQIPEQAKELGISEEEVVKKVMLGQTVDGVFTTVEDVAK 234 ++ + V+ PG++ T L I G+ + + + V V K Sbjct: 226 EQYEIEVTVISPGYIHTNLSVNAITADGSRYGVMDTTTAQGRSPVEVAQDVLAAVGKKKK 285 Query: 235 TVLFLSAFPSAAL 247 V+ PS A+ Sbjct: 286 DVILADLLPSLAV 298 >ENSP00000351035 pep:known-ccds chromosome:NCBI36:4:88476790:88531369:-1 gene:ENSG00000198189 transcript:ENST00000358290 CCDS3619.1 Length = 300 Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 58/220 (26%), Positives = 96/220 (43%), Gaps = 6/220 (2%) Query: 3 NLNGKTAIVTGAASGIGKEIXXXXXXXXXXXXXXXXNQDGANAVAELIEQAGGRAIGVAM 62 ++ G+ ++TGA GIG+ N+ G A + G + + Sbjct: 33 SVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVV 92 Query: 63 DVTNEDAVNAGIDKVAQTFGSVDILVSNAGIQIVNPIENYAFADWKKMQAIHVDGAFLTT 122 D +N + + + KV G V ILV+NAG+ + + +K ++V F TT Sbjct: 93 DCSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTT 152 Query: 123 KAALKHMYKDDRGGVVIYMGSVHSHEASPLKSAYVTAKHGLLGLARVLAKEGAKHN---V 179 KA L M K++ G +V + S H + P AY ++K +G + L E A V Sbjct: 153 KAFLPAMTKNNHGHIVT-VASAAGHVSVPFLLAYCSSKFAAVGFHKTLTDELAALQITGV 211 Query: 180 RSHVVCPGFVRTPLVDKQIPEQAKELGISEEEVVKKVMLG 219 ++ +CP FV T + P + + EEVV ++M G Sbjct: 212 KTTCLCPNFVNTGFIKN--PSTSLGPTLEPEEVVNRLMHG 249 >ENSP00000333300 pep:known-ccds chromosome:NCBI36:4:88443965:88463062:-1 gene:ENSG00000170509 transcript:ENST00000328546 CCDS3618.1 Length = 300 Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 64/253 (25%), Positives = 110/253 (43%), Gaps = 20/253 (7%) Query: 6 GKTAIVTGAASGIGKEIXXXXXXXXXXXXXXXXNQDGANAVAELIEQAGGRAIGVAMDVT 65 G+ ++TGA GIG++ N+ G A + G A +D + Sbjct: 36 GEIVLITGAGHGIGRQTTYEFAKRQSILVLWDINKRGVEETAAECRKLGVTAHAYVVDCS 95 Query: 66 NEDAVNAGIDKVAQTFGSVDILVSNAGIQIVNPIENYAFADWKKMQAIHVD--GAFLTTK 123 N + + +++V + G V I+V+NAG V P + + D + + V+ G F TK Sbjct: 96 NREEIYRSLNQVKKEVGDVTIVVNNAG--TVYPADLLSTKDEEITKTFEVNILGHFWITK 153 Query: 124 AALKHMYKDDRGGVVIYMGSVHSHEASPLKSAYVTAKHGLLGLARVLAKE---GAKHNVR 180 A L M + + G +V + SV HE P Y ++K +G R L E K ++ Sbjct: 154 ALLPSMMERNHGHIVT-VASVCGHEGIPYLIPYCSSKFAAVGFHRGLTSELQALGKTGIK 212 Query: 181 SHVVCPGFVRTPLVDKQIPEQAKELGISEEEVVKKVMLGQTVDGVFTTVEDVAKTVLFLS 240 + +CP FV T P + +EVV+ + +DG+ T K ++F+ Sbjct: 213 TSCLCPVFVNTGFTKN--PSTRLWPVLETDEVVRSL-----IDGILTN-----KKMIFVP 260 Query: 241 AFPSAALTGQSFV 253 ++ + L Q F+ Sbjct: 261 SYINIFLRLQKFL 273 >ENSP00000261494 pep:known chromosome:NCBI36:17:20970850:21035428:1 gene:ENSG00000109016 transcript:ENST00000261494 Length = 285 Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 58/223 (26%), Positives = 92/223 (41%), Gaps = 13/223 (5%) Query: 4 LNGKTAIVTGAASGIGKEIXXXXXXXXXXXXXXXXNQDGANAVAELIEQAGG-------- 55 L ++TGA SG+GKE N A+ ELI + Sbjct: 50 LRNAVVVITGATSGLGKECAKVFYAAGAKLVLCGRN---GGALEELIRELTASHATKVQT 106 Query: 56 -RAIGVAMDVTNEDAVNAGIDKVAQTFGSVDILVSNAGIQIVNPIENYAFADWKKMQAIH 114 + V D+T+ A+ A ++ Q FG VDILV+NAGI I + K++ + Sbjct: 107 HKPYLVTFDLTDSGAIVAAAAEILQCFGYVDILVNNAGISYRGTIMDTTVDVDKRVMETN 166 Query: 115 VDGAFLTTKAALKHMYKDDRGGVVIYMGSVHSHEASPLKSAYVTAKHGLLGLARVLAKEG 174 G TKA L M K R G ++ + S+ + P +SAY +KH L E Sbjct: 167 YFGPVALTKALLPSMIK-RRQGHIVAISSIQGKMSIPFRSAYAASKHATQAFFDCLRAEM 225 Query: 175 AKHNVRSHVVCPGFVRTPLVDKQIPEQAKELGISEEEVVKKVM 217 ++ + V+ PG++ T L I G+ + ++ + Sbjct: 226 EQYEIEVTVISPGYIHTNLSVNAITADGSRYGVMDTTTAQEAL 268 >ENSP00000296424 pep:known-ccds chromosome:NCBI36:4:104218232:104240473:-1 gene:ENSG00000164039 transcript:ENST00000296424 CCDS3663.1 Length = 245 Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 57/198 (28%), Positives = 95/198 (47%), Gaps = 12/198 (6%) Query: 62 MDVTNEDAVNAGIDKVAQTFGSVDILVSNAGIQIVNPIENYAFADWKKMQAIHVDGAFLT 121 +DVT + ID+ A +D+L + AG + + DW ++V +L Sbjct: 57 LDVTKKKQ----IDQFANEVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLM 112 Query: 122 TKAALKHMYKDDRGGVVIYMGSVHSHEASPL-KSAYVTAKHGLLGLARVLAKEGAKHNVR 180 KA L M + G +I M SV S + + Y T K ++GL + +A + + +R Sbjct: 113 IKAFLPKMLAQ-KSGNIINMSSVASSVKGVVNRCVYSTTKAAVIGLTKSVAADFIQQGIR 171 Query: 181 SHVVCPGFVRTPLVDKQIPEQAKELGISEEEVVKKVMLGQTVDGVFTTVEDVAKTVLFLS 240 + VCPG V TP + ++I QA+ G EE + L + G F T E++A ++L+ Sbjct: 172 CNCVCPGTVDTPSLQERI--QAR--GNPEE--ARNDFLKRQKTGRFATAEEIAMLCVYLA 225 Query: 241 AFPSAALTGQSFVVSHGW 258 + SA +TG ++ GW Sbjct: 226 SDESAYVTGNPVIIDGGW 243 >ENSP00000265322 pep:known chromosome:NCBI36:2:216611357:216654709:-1 gene:ENSG00000115425 transcript:ENST00000265322 Length = 302 Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 69/268 (25%), Positives = 112/268 (41%), Gaps = 34/268 (12%) Query: 4 LNGKTAIVTGAASGIGKEIXXXXXXXXXXXXXXXXNQDGANAVAE-----LIEQAGGRAI 58 L G+ AIVTG A+GIGK I + + A+ L R I Sbjct: 16 LQGQVAIVTGGATGIGKAIVKELLELGTNVVIASRKLERLKSAADELQANLPPTKQARVI 75 Query: 59 GVAMDVTNEDAVNAGIDKVAQTFGSVDILVSNAGIQIVNPIENYAFADWKKMQAIHVDGA 118 + ++ NE+ VN + TFG ++ LV+N G Q ++P E+ + W + ++ G Sbjct: 76 PIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGT 135 Query: 119 FLTTKAALKHMYKDDRGGVVIYMGSVHSHEASPLKSAYVTAKHGLLGLARVLAKEGAKHN 178 F KA + + + GG ++ + V + PL A+ G+ L + LA E A Sbjct: 136 FYMCKAG--NSWMKEHGGSIVNI-IVPTKAGFPLAVHSGAARAGVYNLTKSLALEWACSG 192 Query: 179 VRSHVVCPGFVRTPLVDKQIPEQAKELGISEEEVVKKVMLGQT-VDGVFTTV-------- 229 +R + V PG + S+ V GQ+ +G F + Sbjct: 193 IRINCVAPGVI-----------------YSQTAVENYGSWGQSFFEGSFQKIPAKRIGVP 235 Query: 230 EDVAKTVLFLSAFPSAALTGQSFVVSHG 257 E+V+ V FL + ++ +TGQS V G Sbjct: 236 EEVSSVVCFLLSPAASFITGQSVDVDGG 263 >ENSP00000220764 pep:known-ccds chromosome:NCBI36:8:91082756:91133403:1 gene:ENSG00000104325 transcript:ENST00000220764 CCDS6250.1 Length = 335 Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 51/202 (25%), Positives = 93/202 (46%), Gaps = 10/202 (4%) Query: 41 DGANAVAELIE-QAGGRAIGVAMDVTNEDAVNAGIDKVAQTFGSVDILVSNAGIQIVNPI 99 D A AE I Q G + + DV + D V + ++ + G +I+++NA ++P Sbjct: 94 DVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAGHPNIVINNAAGNFISPT 153 Query: 100 ENYAFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMGSVHSHEASPLKSAYVTA 159 E + WK + I ++G T K + K +G + + ++++ S +A Sbjct: 154 ERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGSGFVVPSASA 213 Query: 160 KHGLLGLARVLAKEGAKHNVRSHVVCPGFVRTPLVDKQIPEQAKELGISEEEVVKKVMLG 219 K G+ +++ LA E K+ +R +V+ PG P+ K + G E+E M+G Sbjct: 214 KAGVEAMSKSLAAEWGKYGMRFNVIQPG----PIKTKGAFSRLDPTGTFEKE-----MIG 264 Query: 220 QTVDGVFTTVEDVAKTVLFLSA 241 + G TVE++A FL + Sbjct: 265 RIPCGRLGTVEELANLAAFLCS 286 >ENSP00000327975 pep:known chromosome:NCBI36:17:9615536:9635371:-1 gene:ENSG00000184544 transcript:ENST00000330255 Length = 326 Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 63/262 (24%), Positives = 109/262 (41%), Gaps = 16/262 (6%) Query: 2 SNLNGKTAIVTGAASGIGKEIXXXXXXXXXXXXXXXXN-------QDGANAVAELIEQAG 54 S + K ++T A SG+GKE N D +VA+ +Q Sbjct: 48 SAVQNKVVVITDAISGLGKECARVFHTGGARLVLCGKNWERLENLYDALISVADPSKQTF 107 Query: 55 GRAIGVAMDVTNEDAVNAGIDKVAQTFGSVDILVSNAGIQIVNPIENYAFADWKKMQAIH 114 + V +D+++ V +V +G VDIL++NA +++ P + KK+ + Sbjct: 108 TPKL-VLLDLSDISCVPDVAKEVLDCYGCVDILINNASVKVKGPAHKISLELDKKIMDAN 166 Query: 115 VDGAFLTTKAALKHMYKDDRGGVVIYMGSVHSHEASPLKSAYVTAKHGLLGLARVLAKEG 174 G TKA L +M R G ++ + ++ P ++ Y +KH LG L E Sbjct: 167 YFGPITLTKALLPNMI-SRRTGQIVLVNNIQGKFGIPFRTTYAASKHAALGFFDCLRAEV 225 Query: 175 AKHNVRSHVVCPGFVRTPLVDKQIPEQAKELGISEEEVVKKVMLG----QTVDGVFTTVE 230 +++V V P F+R+ V PEQ + +K+ G + + V TV Sbjct: 226 EEYDVVISTVSPTFIRSYHV---YPEQGNWEASIWKFFFRKLTYGVHPVEVAEEVMRTVR 282 Query: 231 DVAKTVLFLSAFPSAALTGQSF 252 + V + P AA+ ++F Sbjct: 283 RKKQEVFMANPIPKAAVYVRTF 304 >ENSP00000219481 pep:known-ccds chromosome:NCBI36:16:391827:402463:1 gene:ENSG00000103202 transcript:ENST00000219481 CCDS10409.1 Length = 292 Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 62/258 (24%), Positives = 110/258 (42%), Gaps = 11/258 (4%) Query: 4 LNGKTAIVTGAASGIGKEIXXXXXXXXXXXXXXXXNQDGA-NAVAELIEQAGGRAIGVAM 62 L K A +TG SGIG I + A +L G R + ++M Sbjct: 26 LRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSM 85 Query: 63 DVTNEDAVNAGIDKVAQTFGSVDILVSNAGIQIVNPIENYAFADWKKMQAIHVDGAFLTT 122 DV AV A +D+ + FG +DIL++ A + P +F +K + I G F + Sbjct: 86 DVRAPPAVMAAVDQALKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVS 145 Query: 123 KAALKHMYKDDRGGVVIYMGSVHSHEASPLKSAYVTAKHGLLGLARVLAKEGAKHNVRSH 182 + + ++ D GGV++ + + + L+ +AK + + R LA E N+R + Sbjct: 146 RVLYEKFFR-DHGGVIVNITATLGNRGQALQVHAGSAKAAVDAMTRHLAVEWGPQNIRVN 204 Query: 183 VVCPGFVRTPLVDKQIPEQAKELGISEEEVVKKVMLGQTVDGVFTTVEDVAKTVLFLSAF 242 + PG P+ E + LG + + KV ++A +VL+L++ Sbjct: 205 SLAPG----PISGT---EGLRRLGGPQASLSTKVTASPLQR--LGNKTEIAHSVLYLASP 255 Query: 243 PSAALTGQSFVVSHGWFM 260 ++ +TG V G ++ Sbjct: 256 LASYVTGAVLVADGGAWL 273 >ENSP00000250383 pep:known-ccds chromosome:NCBI36:14:23177081:23184686:1 gene:ENSG00000100867 transcript:ENST00000250383 CCDS9604.1 Length = 280 Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 52/192 (27%), Positives = 81/192 (42%), Gaps = 9/192 (4%) Query: 4 LNGKTAIVTGAASGIGKEIXXXXXXXXXXXXXXXXNQDGANAVAELIEQAGGRAIGVAMD 63 L + A+VTG+ SGIG I Q + ++ G G+ Sbjct: 34 LANRVAVVTGSTSGIGFAIARRLARDGAHVVISSRKQQNVDRAMAKLQGEGLSVAGIVCH 93 Query: 64 VTNEDAVNAGIDKVAQTFGSVDILVSNAGIQIVNPIENYAFAD----WKKMQAIHVDGAF 119 V + + K + G VD LV +AG VNP+ W K+ +++V Sbjct: 94 VGKAEDREQLVAKALEHCGGVDFLVCSAG---VNPLVGSTLGTSEQIWDKILSVNVKSPA 150 Query: 120 LTTKAALKHMYKDDRGGVVIYMGSVHSHEASPLKSAYVTAKHGLLGLARVLAKEGAKHNV 179 L L +M ++R G VI + S+ ++ Y +K LLGL R LA E A ++ Sbjct: 151 LLLSQLLPYM--ENRRGAVILVSSIAAYNPVVALGVYNVSKTALLGLTRTLALELAPKDI 208 Query: 180 RSHVVCPGFVRT 191 R + V PG ++T Sbjct: 209 RVNCVVPGIIKT 220 >ENSP00000296521 pep:known chromosome:NCBI36:4:175647958:175680213:-1 gene:ENSG00000164120 transcript:ENST00000296521 Length = 178 Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 52/170 (30%), Positives = 78/170 (45%), Gaps = 12/170 (7%) Query: 3 NLNGKTAIVTGAASGIGKEIXXXXXXXXXXXXXXXXN-QDGANAVAELIEQ-AGGRAIGV 60 ++NGK A+VTGAA GIG+ N + G A L EQ + + + Sbjct: 2 HVNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALDEQFEPQKTLFI 61 Query: 61 AMDVTNEDAVNAGIDKVAQTFGSVDILVSNAGIQIVNPIENYAFADWKKMQAIHVDGAFL 120 DV ++ + KV FG +DILV+NAG VN +N W+K I++ Sbjct: 62 QCDVADQQQLRDTFRKVVDHFGRLDILVNNAG---VNNEKN-----WEKTLQINLVSVIS 113 Query: 121 TTKAALKHMYKDD--RGGVVIYMGSVHSHEASPLKSAYVTAKHGLLGLAR 168 T L +M K + GG++I M S+ + Y +KHG++G R Sbjct: 114 GTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTR 163 >ENSP00000344674 pep:known chromosome:NCBI36:14:23177081:23184686:1 gene:ENSG00000100867 transcript:ENST00000344777 Length = 303 Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 52/192 (27%), Positives = 81/192 (42%), Gaps = 9/192 (4%) Query: 4 LNGKTAIVTGAASGIGKEIXXXXXXXXXXXXXXXXNQDGANAVAELIEQAGGRAIGVAMD 63 L + A+VTG+ SGIG I Q + ++ G G+ Sbjct: 34 LANRVAVVTGSTSGIGFAIARRLARDGAHVVISSRKQQNVDRAMAKLQGEGLSVAGIVCH 93 Query: 64 VTNEDAVNAGIDKVAQTFGSVDILVSNAGIQIVNPIENYAFAD----WKKMQAIHVDGAF 119 V + + K + G VD LV +AG VNP+ W K+ +++V Sbjct: 94 VGKAEDREQLVAKALEHCGGVDFLVCSAG---VNPLVGSTLGTSEQIWDKILSVNVKSPA 150 Query: 120 LTTKAALKHMYKDDRGGVVIYMGSVHSHEASPLKSAYVTAKHGLLGLARVLAKEGAKHNV 179 L L +M ++R G VI + S+ ++ Y +K LLGL R LA E A ++ Sbjct: 151 LLLSQLLPYM--ENRRGAVILVSSIAAYNPVVALGVYNVSKTALLGLTRTLALELAPKDI 208 Query: 180 RSHVVCPGFVRT 191 R + V PG ++T Sbjct: 209 RVNCVVPGIIKT 220 >ENSP00000168216 pep:known-ccds chromosome:NCBI36:X:53474931:53478045:-1 gene:ENSG00000072506 transcript:ENST00000168216 CCDS14354.1 Length = 261 Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/210 (25%), Positives = 95/210 (45%), Gaps = 15/210 (7%) Query: 3 NLNGKTAIVTGAASGIGKEIXXXXXXXXXXXXXXXXNQDGANAVAELIEQAGGRAIGVAM 62 ++ G A++TG ASG+G G A A+ + G + Sbjct: 7 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAK---KLGNNCVFAPA 63 Query: 63 DVTNEDAVNAGIDKVAQTFGSVDILVSNAGIQIVNPIEN------YAFADWKKMQAIHVD 116 DVT+E V + FG VD+ V+ AGI + + N + D++++ +++ Sbjct: 64 DVTSEKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLM 123 Query: 117 GAFLTTKAALKHMYKD--DRGG---VVIYMGSVHSHEASPLKSAYVTAKHGLLGLARVLA 171 G F + M ++ D+GG V+I SV + E ++AY +K G++G+ +A Sbjct: 124 GTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQVGQAAYSASKGGIVGMTLPIA 183 Query: 172 KEGAKHNVRSHVVCPGFVRTPLVDKQIPEQ 201 ++ A +R + PG TPL+ +PE+ Sbjct: 184 RDLAPIGIRVMTIAPGLFGTPLL-TSLPEK 212 >ENSP00000288111 pep:known-ccds chromosome:NCBI36:14:23829649:23838815:-1 gene:ENSG00000157379 transcript:ENST00000288111 CCDS9623.1 Length = 313 Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 65/261 (24%), Positives = 115/261 (44%), Gaps = 28/261 (10%) Query: 4 LNGKTAIVTGAASGIGKEIXXXXXXXXXXXXXXXXNQDGANAVAELIEQAGGRAIGVAMD 63 +NG+ +VTGA+ GIG+ I + D VA+ + GG+ + V D Sbjct: 5 MNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLGGQCVPVVCD 64 Query: 64 VTNEDAVNAGIDKV-AQTFGSVDILVSN--AGIQIVNPIENYAFAD-----WKKMQAIHV 115 + E V + ++V + G +D+LV+N AG+Q + N AF + W + + + Sbjct: 65 SSQESEVRSLFEQVDREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGL 124 Query: 116 DGAFLTTKAALKHMYKDDRGGVVIYM--GSVHSHEASPLKSAYVTAKHGLLGLARVLAKE 173 G + + + M +G +V+ GS+ P Y K LA A E Sbjct: 125 RGHYFCSVYGARLMVPAGQGLIVVISSPGSLQYMFNVP----YGVGKAACDKLAADCAHE 180 Query: 174 GAKHNVRSHVVCPGFVRTPLVDKQIPEQAKELGISEEEVVKKVMLGQTVDGVFTTVEDV- 232 +H V + PG V+T L+ + +++EEV++ +L Q F++ E Sbjct: 181 LRRHGVSCVSLWPGIVQTELLKEH---------MAKEEVLQDPVLKQ-FKSAFSSAETTE 230 Query: 233 --AKTVLFLSAFPS-AALTGQ 250 K V+ L+ P+ +L+G+ Sbjct: 231 LSGKCVVALATDPNILSLSGK 251 >ENSP00000171214 pep:known-ccds chromosome:NCBI36:19:9984925:9993954:1 gene:ENSG00000080511 transcript:ENST00000171214 CCDS12223.1 Length = 311 Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 53/189 (28%), Positives = 82/189 (43%), Gaps = 8/189 (4%) Query: 7 KTAIVTGAASGIGKEIXXXXXXXXXXXXXXXXNQDGANAVAELIEQAGGRAIGVAMDVTN 66 +T +++G +SGIG E+ E +E A G A+G + V Sbjct: 6 RTVLISGCSSGIGLELAVQLAHDPKKRYQVVATMRDLGK-KETLEAAAGEALGQTLTVAQ 64 Query: 67 EDAVNAGIDKVAQTF----GSVDILVSNAGIQIVNPIENYAFADWKKMQAIHVDGAFLTT 122 D + + VAQ G VD+LV+NAG+ +V P+E + A + + + GA Sbjct: 65 LDVCSD--ESVAQCLSCIQGEVDVLVNNAGMGLVGPLEGLSLAAMQNVFDTNFFGAVRLV 122 Query: 123 KAALKHMYKDDRGGVVIYMGSVHSHEASPLKSAYVTAKHGLLGLARVLAKEGAKHNVRSH 182 KA L M K R G ++ + SV + Y +K L G LA + + N+ Sbjct: 123 KAVLPGM-KRRRQGHIVVISSVMGLQGVIFNDVYAASKFALEGFFESLAIQLLQFNIFIS 181 Query: 183 VVCPGFVRT 191 +V PG V T Sbjct: 182 LVEPGPVVT 190 >ENSP00000353759 pep:known chromosome:NCBI36:14:59681255:59701900:-1 gene:ENSG00000100612 transcript:ENST00000360557 Length = 375 Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/209 (26%), Positives = 93/209 (44%), Gaps = 21/209 (10%) Query: 11 VTGAASGIGKEIXXXXXXXXXXXXXXXXNQDGANAVAELIEQAGGRAIG----------- 59 VTGA+SGIG+E+ A V EL E+ R + Sbjct: 55 VTGASSGIGEELAYQLSKLGVSLVL------SARRVHEL-ERVKRRCLENGNLKEKDILV 107 Query: 60 VAMDVTNEDAVNAGIDKVAQTFGSVDILVSNAGIQIVNPIENYAFADWKKMQAIHVDGAF 119 + +D+T+ + A V Q FG +DILV+N G+ + + + ++K+ ++ G Sbjct: 108 LPLDLTDTGSHEAATKAVLQEFGRIDILVNNGGMSQRSLCMDTSLDVYRKLIELNYLGTV 167 Query: 120 LTTKAALKHMYKDDRGGVVIYMGSVHSHEASPLKSAYVTAKHGLLGLARVLAKEGAKH-N 178 TK L HM + +G +V + S+ + PL Y +KH L G L E A + Sbjct: 168 SLTKCVLPHMIERKQGKIVT-VNSILGIISVPLSIGYCASKHALRGFFNGLRTELATYPG 226 Query: 179 VRSHVVCPGFVRTPLVDKQIP-EQAKELG 206 + +CPG V++ +V+ + E K +G Sbjct: 227 IIVSNICPGPVQSNIVENSLAGEVTKTIG 255 >ENSP00000216500 pep:known-ccds chromosome:NCBI36:14:59681255:59701900:-1 gene:ENSG00000100612 transcript:ENST00000216500 CCDS9743.1 Length = 339 Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/209 (26%), Positives = 93/209 (44%), Gaps = 21/209 (10%) Query: 11 VTGAASGIGKEIXXXXXXXXXXXXXXXXNQDGANAVAELIEQAGGRAIG----------- 59 VTGA+SGIG+E+ A V EL E+ R + Sbjct: 55 VTGASSGIGEELAYQLSKLGVSLVL------SARRVHEL-ERVKRRCLENGNLKEKDILV 107 Query: 60 VAMDVTNEDAVNAGIDKVAQTFGSVDILVSNAGIQIVNPIENYAFADWKKMQAIHVDGAF 119 + +D+T+ + A V Q FG +DILV+N G+ + + + ++K+ ++ G Sbjct: 108 LPLDLTDTGSHEAATKAVLQEFGRIDILVNNGGMSQRSLCMDTSLDVYRKLIELNYLGTV 167 Query: 120 LTTKAALKHMYKDDRGGVVIYMGSVHSHEASPLKSAYVTAKHGLLGLARVLAKEGAKH-N 178 TK L HM + +G +V + S+ + PL Y +KH L G L E A + Sbjct: 168 SLTKCVLPHMIERKQGKIVT-VNSILGIISVPLSIGYCASKHALRGFFNGLRTELATYPG 226 Query: 179 VRSHVVCPGFVRTPLVDKQIP-EQAKELG 206 + +CPG V++ +V+ + E K +G Sbjct: 227 IIVSNICPGPVQSNIVENSLAGEVTKTIG 255 >ENSP00000262542 pep:known chromosome:NCBI36:9:114196641:114274505:1 gene:ENSG00000119471 transcript:ENST00000262542 Length = 417 Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 86/201 (42%), Gaps = 54/201 (26%) Query: 1 MSNLNGKTAIVTGAASGIGKEIXXXXXXXXXXXXXXXXNQDGANAV-------------- 46 + L G T +TGA+ GIGK I +DGAN V Sbjct: 4 LKRLAGCTVFITGASRGIGKAIALKAA------------KDGANIVIAAKTAQPHPKLLG 51 Query: 47 -----AELIEQAGGRAIGVAMDVTNEDAVNAGIDKVAQTFGSVDILVSNA-GIQIVNPIE 100 AE IE GG+A+ +DV +E ++A ++K + FG +DILV+NA I + N ++ Sbjct: 52 TIYTAAEEIEAVGGKALPCIVDVRDEQQISAAVEKAIKKFGGIDILVNNASAISLTNTLD 111 Query: 101 NYAFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMGSVHSHEASPLK------- 153 M ++ G +L +KA + ++ K ++ + + PL Sbjct: 112 T-PTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHIL--------NISPPLNLNPVWFK 162 Query: 154 --SAYVTAKHGL----LGLAR 168 AY AK+G+ LG+A Sbjct: 163 QHCAYTIAKYGMSMYVLGMAE 183 >ENSP00000334801 pep:known-ccds chromosome:NCBI36:14:23527959:23545444:1 gene:ENSG00000187630 transcript:ENST00000335125 CCDS9606.1 Length = 230 Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 56/202 (27%), Positives = 78/202 (38%), Gaps = 19/202 (9%) Query: 4 LNGKTAIVTGAASGIGKEIXXXXXXXXXXXXXXXXNQDGANAVAELIEQAGGRAIGVAMD 63 L K A+VT + GIG I Q + ++ G G Sbjct: 28 LTNKVALVTASTDGIGFAIARRLAQDRAHVVVSSRKQQNVDQAVATLQGEGLSVTGTVCH 87 Query: 64 VTNEDAVNAGIDKVAQTFGSVDILVSNAGIQIVNP----IENYAFADWKKMQAIHVDGAF 119 V + + + G +DILVSNA VNP + + W K I+V Sbjct: 88 VGKAEDRERLVAMAVKLHGGIDILVSNAA---VNPFFGSLMDVTEEVWDKTLDINVKAPA 144 Query: 120 LTTKAALKHMYKDDRGGVVIYMGSVHSHEASPLKSAYVTAKHGLLGLARVLAKEGAKHNV 179 L TKA + M K GG V+ + S+ + SP S Y +K LLGL LA E A N+ Sbjct: 145 LMTKAVVPEMEKRG-GGSVVIVSSIAAFSPSPGFSPYNVSKTALLGLNNTLAIELAPRNI 203 Query: 180 RSHVV-----------CPGFVR 190 R + + C G+ R Sbjct: 204 RVNCLHLDLSRLASAGCSGWTR 225 >ENSP00000263278 pep:known-ccds chromosome:NCBI36:19:54008091:54031746:-1 gene:ENSG00000087076 transcript:ENST00000263278 CCDS12736.1 Length = 270 Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 55/213 (25%), Positives = 100/213 (46%), Gaps = 25/213 (11%) Query: 42 GANAVAELIEQAGGRAIG--------VAMDVTNEDAVNAGIDKVAQTFGSVDILVSNAG- 92 GA V +++GGRA+ + DVT ED V + + + FG +D +V+NAG Sbjct: 33 GARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLDCVVNNAGH 92 Query: 93 -IQIVNPIENYAFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVV---IYMGSVHSHE 148 P E A ++++ +++ G + TK AL ++ K +G V+ +G++ + Sbjct: 93 HPPPQRPEETSA-QGFRQLLELNLLGTYTLTKLALPYLRK-SQGNVINISSLVGAIGQAQ 150 Query: 149 ASPLKSAYVTAKHGLLGLARVLAKEGAKHNVRSHVVCPGFVRTPLVDKQIPEQAKELGIS 208 A P YV K + + + LA + + + VR + + PG + TPL E+ L Sbjct: 151 AVP----YVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLW-----EELAALMPD 201 Query: 209 EEEVVKKVMLGQTVDGVFTTVEDVAKTVLFLSA 241 +++ ML Q + G +V +FL++ Sbjct: 202 PRATIREGMLAQPL-GRMGQPAEVGAAAVFLAS 233 >ENSP00000307607 pep:known-ccds chromosome:NCBI36:8:57375122:57395795:-1 gene:ENSG00000170786 transcript:ENST00000303749 CCDS6167.1 Length = 309 Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 54/245 (22%), Positives = 104/245 (42%), Gaps = 6/245 (2%) Query: 3 NLNGKTAIVTGAASGIGKEIXXXXXXXXXXXXXXXXNQDGANAVAELIEQAGG-RAIGVA 61 N+ G+ ++TGA SG+G+ + N++G ++ +AG R Sbjct: 37 NVAGEIVLITGAGSGLGRLLALQFARLGSVLVLWDINKEGNEETCKMAREAGATRVHAYT 96 Query: 62 MDVTNEDAVNAGIDKVAQTFGSVDILVSNAGIQIVNPIENYAFADWKKMQAIHVDGAFLT 121 D + ++ V D+V + G V IL++NAGI + +K ++ T Sbjct: 97 CDCSQKEGVYRVADQVKKEVGDVSILINNAGIVTGKKFLDCPDELMEKSFDVNFKAHLWT 156 Query: 122 TKAALKHMYKDDRGGVVIYMGSVHSHEASPLKSAYVTAKHGLLGLARVLAKEG---AKHN 178 KA L M +D G +V S + L + Y +K G A + E + Sbjct: 157 YKAFLPAMIANDHGHLVCISSSAGLSGVNGL-ADYCASKFAAFGFAESVFVETFVQKQKG 215 Query: 179 VRSHVVCPGFVRTPLVDKQIPEQAKELGISEEEV-VKKVMLGQTVDGVFTTVEDVAKTVL 237 +++ +VCP F++T + + L I E + V+K++ + ++ + + ++ Sbjct: 216 IKTTIVCPFFIKTGMFEGCTTGCPSLLPILEPKYAVEKIVEAILQEKMYLYMPKLLYFMM 275 Query: 238 FLSAF 242 FL +F Sbjct: 276 FLKSF 280 >ENSP00000303356 pep:known-ccds chromosome:NCBI36:17:77587046:77588862:-1 gene:ENSG00000169738 transcript:ENST00000306869 CCDS11799.1 Length = 244 Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 59/256 (23%), Positives = 101/256 (39%), Gaps = 18/256 (7%) Query: 4 LNGKTAIVTGAASGIGKEIXXXXXXXXXXXXXXXXNQDGANAVAELIEQAGGRAIGVAMD 63 L G+ +VTGA GIG+ Q ++ L+ + G V +D Sbjct: 5 LAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDS---LVRECPGIE-PVCVD 60 Query: 64 VTNEDAVNAGIDKVAQTFGSVDILVSNAGIQIVNPIENYAFADWKKMQAIHVDGAFLTTK 123 + + +A + V G VD+LV+NA + ++ P + + +++ ++ Sbjct: 61 LGDWEATERALGSV----GPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQ 116 Query: 124 AALKHMYKDDRGGVVIYMGSVHSHEASPLKSAYVTAKHGLLGLARVLAKEGAKHNVRSHV 183 + + G ++ + S S A S Y + K L L +V+A E H +R + Sbjct: 117 IVARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVMALELGPHKIRVNA 176 Query: 184 VCPGFVRTPLVDKQIPEQAKELGISEEEVVKKVMLGQTVDGVFTTVEDVAKTVLFLSAFP 243 V P V T + + K K ML + G F VE V +LFL + Sbjct: 177 VNPTVVMTSMGQATWSDPHK----------AKTMLNRIPLGKFAEVEHVVNAILFLLSDR 226 Query: 244 SAALTGQSFVVSHGWF 259 S TG + V G++ Sbjct: 227 SGMTTGSTLPVEGGFW 242 >ENSP00000312939 pep:known-ccds chromosome:NCBI36:18:59148813:59185438:-1 gene:ENSG00000119537 transcript:ENST00000326575 CCDS11982.1 Length = 332 Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/194 (25%), Positives = 87/194 (44%), Gaps = 6/194 (3%) Query: 4 LNGKTAIVTGAASGIGKEIXXXXXXXXXXXXXXXXNQDGANAVAELIEQAGGR----AIG 59 L G +VTG +SGIGK I N+D + IE + Sbjct: 30 LPGAHVVVTGGSSGIGKCIAIECYKQGAFITLVARNEDKLLQAKKEIEMHSINDKQVVLC 89 Query: 60 VAMDVTNE-DAVNAGIDKVAQTFGSVDILVSNAGIQIVNPIENYAFADWKKMQAIHVDGA 118 +++DV+ + + V I + + G VD+LV+ AG+ + E+ + ++++ +I+ G+ Sbjct: 90 ISVDVSQDYNQVENVIKQAQEKLGPVDMLVNCAGMAVSGKFEDLEVSTFERLMSINYLGS 149 Query: 119 FLTTKAALKHMYKDDRGGVVIYMGSVHSHEASPLKSAYVTAKHGLLGLARVLAKEGAKHN 178 ++A + M K+ R G ++++ S +AY +K + GLA L E +N Sbjct: 150 VYPSRAVITTM-KERRVGRIVFVSSQAGQLGLFGFTAYSASKFAIRGLAEALQMEVKPYN 208 Query: 179 VRSHVVCPGFVRTP 192 V V P TP Sbjct: 209 VYITVAYPPDTDTP 222 >ENSP00000251312 pep:known chromosome:NCBI36:17:32022442:32031324:1 gene:ENSG00000108272 transcript:ENST00000251312 Length = 260 Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 59/253 (23%), Positives = 108/253 (42%), Gaps = 23/253 (9%) Query: 1 MSNLNGKTAIVTGAASGIGKEIXXXXXXXXXXXXXXXXNQDGANAVAELIEQAG--GRAI 58 M + A+VTGA+ GIG + +A + AG G I Sbjct: 6 MERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLI 65 Query: 59 GVAMDVTNEDAVNAGIDKVAQTFGSVDILVSNAGIQIVNPIENYAFADWKKMQAIHVDGA 118 D++NE+ + + + VDI ++NAG+ + + + + + WK M ++V Sbjct: 66 PYRCDLSNEEDILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLAL 125 Query: 119 FLTTKAALKHMYK---DDRGGVVIYMGSVHSHEASPLKSA--YVTAKHGLLGLARVLAKE 173 + T+ A + M + DD G +I + S+ H PL Y K+ + L L +E Sbjct: 126 SICTREAYQSMKERNVDD--GHIININSMSGHRVLPLSVTHFYSATKYAVTALTEGLRQE 183 Query: 174 --GAKHNVRSHVVCPGFVRTPLVDKQIPEQAKELGISEEEVVKKVMLGQTVDGVFTTVED 231 A+ ++R+ + PG V T K + ++ E + E +K + ED Sbjct: 184 LREAQTHIRATCISPGVVETQFAFK-LHDKDPEKAAATYEQMKCL-----------KPED 231 Query: 232 VAKTVLFLSAFPS 244 VA+ V+++ + P+ Sbjct: 232 VAEAVIYVLSTPA 244 >ENSP00000372203 pep:known chromosome:NCBI36:14:23527959:23545444:1 gene:ENSG00000187630 transcript:ENST00000382755 Length = 158 Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/107 (37%), Positives = 53/107 (49%), Gaps = 8/107 (7%) Query: 82 GSVDILVSNAGIQIVNP----IENYAFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGV 137 G +DILVSNA VNP + + W K I+V L TKA + M K GG Sbjct: 7 GGIDILVSNAA---VNPFFGSLMDVTEEVWDKTLDINVKAPALMTKAVVPEMEKRG-GGS 62 Query: 138 VIYMGSVHSHEASPLKSAYVTAKHGLLGLARVLAKEGAKHNVRSHVV 184 V+ + S+ + SP S Y +K LLGL LA E A N+R + + Sbjct: 63 VVIVSSIAAFSPSPGFSPYNVSKTALLGLNNTLAIELAPRNIRVNCL 109 >ENSP00000364453 pep:known-ccds chromosome:NCBI36:X:53474931:53478028:-1 gene:ENSG00000072506 transcript:ENST00000375304 CCDS35300.1 Length = 252 Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/210 (24%), Positives = 91/210 (43%), Gaps = 24/210 (11%) Query: 3 NLNGKTAIVTGAASGIGKEIXXXXXXXXXXXXXXXXNQDGANAVAELIEQAGGRAIGVAM 62 ++ G A++TG ASG+G G A A+ + G + Sbjct: 7 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAK---KLGNNCVFAPA 63 Query: 63 DVTNEDAVNAGIDKVAQTFGSVDILVSNAGIQIVNPIEN------YAFADWKKMQAIHVD 116 DVT+E V + FG VD+ V+ AGI + + N + D++++ +++ Sbjct: 64 DVTSEKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLM 123 Query: 117 GAFLTTKAALKHMYKD--DRG---GVVIYMGSVHSHEASPLKSAYVTAKHGLLGLARVLA 171 G F + M ++ D+G GV+I SV + E ++AY +K G++G+ +A Sbjct: 124 GTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQVGQAAYSASKGGIVGMTLPIA 183 Query: 172 KEGAKHNVRSHVVCPGFVRTPLVDKQIPEQ 201 ++ A G TPL+ +PE+ Sbjct: 184 RDLAPI---------GLFGTPLL-TSLPEK 203 >ENSP00000225929 pep:known-ccds chromosome:NCBI36:17:37954758:37960750:1 gene:ENSG00000108786 transcript:ENST00000225929 CCDS11428.1 Length = 328 Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 52/201 (25%), Positives = 81/201 (40%), Gaps = 13/201 (6%) Query: 10 IVTGAASGIGKEIXXXXXXXXXXXXXXXXNQDGANAVAELIEQAGGRAIG------VAMD 63 ++TG +SGIG + L E A A + +D Sbjct: 7 LITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLD 66 Query: 64 VTNEDAVNAGIDKVAQTFGSVDILVSNAGIQIVNPIENYAFADWKKMQAIHVDGAFLTTK 123 V + +V A ++V + G VD+LV NAG+ ++ P+E + ++V G + Sbjct: 67 VRDSKSVAAARERVTE--GRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQ 124 Query: 124 AALKHMYKDDRG-GVVIYMGSVHSHEASPLKSAYVTAKHGLLGLARVLAKEGAKHNVRSH 182 A L M + RG G V+ GSV P Y +K L GL LA V Sbjct: 125 AFLPDMKR--RGSGRVLVTGSVGGLMGLPFNDVYCASKFALEGLCESLAVLLLPFGVHLS 182 Query: 183 VVCPGFVRTPLVDKQI--PEQ 201 ++ G V T ++K + PE+ Sbjct: 183 LIECGPVHTAFMEKVLGSPEE 203 >ENSP00000364412 pep:known-ccds chromosome:NCBI36:9:98037409:98104255:-1 gene:ENSG00000130948 transcript:ENST00000375263 CCDS6716.1 Length = 310 Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 60/253 (23%), Positives = 110/253 (43%), Gaps = 15/253 (5%) Query: 6 GKTAIVTGAASGIGKEIXXXXXXXXXXXXXXXXNQDGANAVAELIEQAGGRAIGVAM-DV 64 G+ A++TGA GIGK + A+A IE+ GR++ + D Sbjct: 48 GQWAVITGAGDGIGKAYSFELAKRGLNVVLISRTLEKLEAIATEIERTTGRSVKIIQADF 107 Query: 65 TNEDAVNAGIDKVAQTFGSVDILVSNAGIQIVNPIENYAFADWKKMQAI---HVDGAFLT 121 T +D +K+A + ILV+N G+ + N + ++ ++Q++ ++ Sbjct: 108 TKDDIYEHIKEKLAGL--EIGILVNNVGM-LPNLLPSHFLNAPDEIQSLIHCNITSVVKM 164 Query: 122 TKAALKHMYKDDRGGVVIYMGSVHSHEASPLKSAYVTAKHGLLGLARVLAKEGAKHNVRS 181 T+ LKHM + + G+++ + S + PL S Y +K + ++ L +E V Sbjct: 165 TQLILKHM-ESRQKGLILNISSGIALFPWPLYSMYSASKAFVCAFSKALQEEYKAKEVII 223 Query: 182 HVVCPGFVRTPLVDKQIPEQAKELGISEEEVVKKVMLGQTVDGVFTTVEDVAKTVL--FL 239 V+ P V T + + + +E VK+ + T+ G T +A +L FL Sbjct: 224 QVLTPYAVSTAMTKYL---NTNVITKTADEFVKESLNYVTIGG--ETCGCLAHEILAGFL 278 Query: 240 SAFPSAALTGQSF 252 S P+ A +F Sbjct: 279 SLIPAWAFYSGAF 291 >ENSP00000368173 pep:known chromosome:NCBI36:17:24248928:24254215:-1 gene:ENSG00000167536 transcript:ENST00000378895 Length = 377 Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 2/95 (2%) Query: 1 MSNLNGKTAIVTGAASGIGKEIXXXXXXXXXXXXXXXXNQDGANAVAELIEQAGG--RAI 58 M NL G+TA+VTGA SGIGK +Q+ A A + Q G I Sbjct: 31 MGNLRGRTAVVTGANSGIGKMTALELARRGARVVLACRSQERGEAAAFDLRQESGNNEVI 90 Query: 59 GVAMDVTNEDAVNAGIDKVAQTFGSVDILVSNAGI 93 +A+D+ + +V A + +DIL+ NAGI Sbjct: 91 FMALDLASLASVRAFATAFLSSEPRLDILIHNAGI 125 BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BMA10247_A0022[320389] (246 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BMA10247_A0023[320389] (198 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BMA10247_A0024[320389] (78 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BMA10247_A0025[320389] (52 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BMA10247_A0026[320389] (275 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BMA10247_A0027[320389] (207 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BMA10247_A0028[320389] (39 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BMA10247_A0029[320389] (468 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ENSP00000003100 pep:known-ccds chromosome:NCBI36:7:91579420:9160... 64 3e-10 ENSP00000337915 pep:known-ccds chromosome:NCBI36:7:99192540:9921... 62 2e-09 ENSP00000346607 pep:known chromosome:NCBI36:7:99083437:99219700:... 62 2e-09 ENSP00000222982 pep:known-ccds chromosome:NCBI36:7:99083759:9911... 62 2e-09 ENSP00000274118 pep:known chromosome:NCBI36:4:187349972:18737160... 61 3e-09 ENSP00000368079 pep:known-ccds chromosome:NCBI36:4:187349972:187... 61 3e-09 ENSP00000258415 pep:known-ccds chromosome:NCBI36:2:219354745:219... 60 4e-09 ENSP00000337450 pep:known-ccds chromosome:NCBI36:7:99140596:9917... 60 6e-09 ENSP00000292414 pep:known chromosome:NCBI36:7:99131301:99170652:... 60 7e-09 ENSP00000346887 pep:known-ccds chromosome:NCBI36:7:99263572:9930... 59 1e-08 ENSP00000345351 pep:known chromosome:NCBI36:7:99283200:99301560:... 59 2e-08 ENSP00000368975 pep:known chromosome:NCBI36:7:99263602:99301564:... 58 2e-08 ENSP00000261835 pep:known-ccds chromosome:NCBI36:14:99220407:992... 56 7e-08 ENSP00000222382 pep:known-ccds chromosome:NCBI36:7:99263572:9930... 56 1e-07 ENSP00000271153 pep:known-ccds chromosome:NCBI36:1:47037329:4705... 54 3e-07 ENSP00000360991 pep:known chromosome:NCBI36:1:47037305:47057608:... 54 3e-07 ENSP00000360987 pep:known chromosome:NCBI36:1:47037305:47057364:... 54 3e-07 ENSP00000228606 pep:known-ccds chromosome:NCBI36:12:56442385:564... 53 7e-07 ENSP00000275016 pep:known-ccds chromosome:NCBI36:6:46625405:4672... 52 2e-06 ENSP00000001146 pep:known-ccds chromosome:NCBI36:2:72209875:7222... 51 2e-06 ENSP00000338087 pep:known-ccds chromosome:NCBI36:7:139124668:139... 50 4e-06 ENSP00000360586 pep:known-ccds chromosome:NCBI36:10:94823222:948... 49 1e-05 ENSP00000224356 pep:known-ccds chromosome:NCBI36:10:94823637:948... 49 2e-05 ENSP00000374478 pep:novel chromosome:NCBI36:1:47262077:47288430:... 48 2e-05 ENSP00000360968 pep:known-ccds chromosome:NCBI36:1:47261827:4728... 48 3e-05 ENSP00000269703 pep:known-ccds chromosome:NCBI36:19:15497144:155... 47 5e-05 ENSP00000285949 pep:known-ccds chromosome:NCBI36:10:94811011:948... 47 6e-05 ENSP00000325822 pep:known-ccds chromosome:NCBI36:8:143988983:143... 46 9e-05 >ENSP00000003100 pep:known-ccds chromosome:NCBI36:7:91579420:91601676:-1 gene:ENSG00000001630 transcript:ENST00000003100 CCDS5623.1 Length = 509 Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 3/111 (2%) Query: 308 ERVINETLRLLTPNALMVRATTQAVSLQGVALPARCEIVVCPFLVHREANAFARPHAFLP 367 +R I ETLRL P +M+R ++ G +P ++ V P + R +++ F P Sbjct: 370 DRCIKETLRLRPPIMIMMRMARTPQTVAGYTIPPGHQVCVSPTVNQRLKDSWVERLDFNP 429 Query: 368 SRWETARPS---PYEYFPFGAGGHFCAGRNLALSLIGEVLSTLLSRFDFVL 415 R+ P+ + Y PFGAG H C G N A I + ST+L ++F L Sbjct: 430 DRYLQDNPASGEKFAYVPFGAGRHRCIGENFAYVQIKTIWSTMLRLYEFDL 480 >ENSP00000337915 pep:known-ccds chromosome:NCBI36:7:99192540:99219744:-1 gene:ENSG00000160868 transcript:ENST00000336411 CCDS5674.1 Length = 503 Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 3/109 (2%) Query: 308 ERVINETLRLLTPNALMVRATTQAVSLQGVALPARCEIVVCPFLVHREANAFARPHAFLP 367 + V+NETLRL + R + V + G+ +P +++ + +HR+ + P FLP Sbjct: 357 DMVVNETLRLFPIAMRLERVCKKDVEINGMFIPKGVVVMIPSYALHRDPKYWTEPEKFLP 416 Query: 368 SRWETARP---SPYEYFPFGAGGHFCAGRNLALSLIGEVLSTLLSRFDF 413 R+ PY Y PFG+G C G AL + L +L F F Sbjct: 417 ERFSKKNKDNIDPYIYTPFGSGPRNCIGMRFALMNMKLALIRVLQNFSF 465 >ENSP00000346607 pep:known chromosome:NCBI36:7:99083437:99219700:-1 gene:ENSG00000160868 transcript:ENST00000354593 Length = 353 Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 3/109 (2%) Query: 308 ERVINETLRLLTPNALMVRATTQAVSLQGVALPARCEIVVCPFLVHREANAFARPHAFLP 367 + V+NETLRL + R + V + G+ +P +++ + +HR+ + P FLP Sbjct: 207 DMVVNETLRLFPIAMRLERVCKKDVEINGMFIPKGVVVMIPSYALHRDPKYWTEPEKFLP 266 Query: 368 SRWETARP---SPYEYFPFGAGGHFCAGRNLALSLIGEVLSTLLSRFDF 413 R+ PY Y PFG+G C G AL + L +L F F Sbjct: 267 ERFSKKNKDNIDPYIYTPFGSGPRNCIGMRFALMNMKLALIRVLQNFSF 315 >ENSP00000222982 pep:known-ccds chromosome:NCBI36:7:99083759:99115557:-1 gene:ENSG00000106258 transcript:ENST00000222982 CCDS5672.1 Length = 502 Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 2/108 (1%) Query: 308 ERVINETLRLLTPNALMVRATTQAVSLQGVALPARCEIVVCPFLVHREANAFARPHAFLP 367 + V+NETLRL + R + V + GV +P +V+ + +H + + P F P Sbjct: 357 DMVVNETLRLFPVAIRLERTCKKDVEINGVFIPKGSMVVIPTYALHHDPKYWTEPEEFRP 416 Query: 368 SRWETARPS--PYEYFPFGAGGHFCAGRNLALSLIGEVLSTLLSRFDF 413 R+ + S PY Y PFG G C G AL + L +L F F Sbjct: 417 ERFSKKKDSIDPYIYTPFGTGPRNCIGMRFALMNMKLALIRVLQNFSF 464 >ENSP00000274118 pep:known chromosome:NCBI36:4:187349972:187371605:1 gene:ENSG00000145476 transcript:ENST00000274118 Length = 510 Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 37/107 (34%), Positives = 52/107 (48%), Gaps = 3/107 (2%) Query: 308 ERVINETLRLLTPNALMVRATTQAVSLQGVALPARCEIVVCPFLVHREANAFARPHAFLP 367 E VI ETLRL L R+ ++ + G + E V+ P+ +HR+ F P F P Sbjct: 367 ECVIKETLRLFPSVPLFARSVSEDCEVAGYRVLKGTEAVIIPYALHRDPRYFPNPEEFQP 426 Query: 368 SRW--ETARP-SPYEYFPFGAGGHFCAGRNLALSLIGEVLSTLLSRF 411 R+ E A+ PY Y PF AG C G+ A+ +LS +L F Sbjct: 427 ERFFPENAQGRHPYAYVPFSAGPRNCIGQKFAVMEEKTILSCILRHF 473 >ENSP00000368079 pep:known-ccds chromosome:NCBI36:4:187349972:187371605:1 gene:ENSG00000145476 transcript:ENST00000378802 CCDS34119.1 Length = 525 Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 37/107 (34%), Positives = 52/107 (48%), Gaps = 3/107 (2%) Query: 308 ERVINETLRLLTPNALMVRATTQAVSLQGVALPARCEIVVCPFLVHREANAFARPHAFLP 367 E VI ETLRL L R+ ++ + G + E V+ P+ +HR+ F P F P Sbjct: 382 ECVIKETLRLFPSVPLFARSVSEDCEVAGYRVLKGTEAVIIPYALHRDPRYFPNPEEFQP 441 Query: 368 SRW--ETARP-SPYEYFPFGAGGHFCAGRNLALSLIGEVLSTLLSRF 411 R+ E A+ PY Y PF AG C G+ A+ +LS +L F Sbjct: 442 ERFFPENAQGRHPYAYVPFSAGPRNCIGQKFAVMEEKTILSCILRHF 488 >ENSP00000258415 pep:known-ccds chromosome:NCBI36:2:219354745:219388254:1 gene:ENSG00000135929 transcript:ENST00000258415 CCDS2423.1 Length = 531 Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 7/113 (6%) Query: 310 VINETLRLLTPNALMVRATTQAVSLQGVALPARCEIVVCPFLVHREANAFARPHAFLPSR 369 V+ ETLRL R + + + G P + V C ++V R+ AF+ P +F P R Sbjct: 389 VLKETLRLYPVVPTNSRIIEKEIEVDGFLFPKNTQFVFCHYVVSRDPTAFSEPESFQPHR 448 Query: 370 W-ETARPS------PYEYFPFGAGGHFCAGRNLALSLIGEVLSTLLSRFDFVL 415 W ++P+ P+ PFG G C GR +A + +L+ L+ ++ VL Sbjct: 449 WLRNSQPATPRIQHPFGSVPFGYGVRACLGRRIAELEMQLLLARLIQKYKVVL 501 >ENSP00000337450 pep:known-ccds chromosome:NCBI36:7:99140596:99170757:-1 gene:ENSG00000160870 transcript:ENST00000336374 CCDS5673.1 Length = 503 Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 3/109 (2%) Query: 308 ERVINETLRLLTPNALMVRATTQAVSLQGVALPARCEIVVCPFLVHREANAFARPHAFLP 367 + V+NETLRL + R + V + G+ +P +++ +++H + + P FLP Sbjct: 357 DMVVNETLRLFPVAMRLERVCKKDVEINGMFIPKGVVVMIPSYVLHHDPKYWREPEKFLP 416 Query: 368 SRWETARP---SPYEYFPFGAGGHFCAGRNLALSLIGEVLSTLLSRFDF 413 R+ PY Y PFG+G C G AL + L +L F F Sbjct: 417 ERFSKKNKDNIDPYIYTPFGSGPRNCIGMRFALVNMKLALVRVLQNFSF 465 >ENSP00000292414 pep:known chromosome:NCBI36:7:99131301:99170652:-1 gene:ENSG00000160870 transcript:ENST00000292414 Length = 533 Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 3/109 (2%) Query: 308 ERVINETLRLLTPNALMVRATTQAVSLQGVALPARCEIVVCPFLVHREANAFARPHAFLP 367 + V+NETLRL + R + V + G+ +P +++ +++H + + P FLP Sbjct: 357 DMVVNETLRLFPVAMRLERVCKKDVEINGMFIPKGVVVMIPSYVLHHDPKYWREPEKFLP 416 Query: 368 SRWETARP---SPYEYFPFGAGGHFCAGRNLALSLIGEVLSTLLSRFDF 413 R+ PY Y PFG+G C G AL + L +L F F Sbjct: 417 ERFSKKNKDNIDPYIYTPFGSGPRNCIGMRFALVNMKLALVRVLQNFSF 465 >ENSP00000346887 pep:known-ccds chromosome:NCBI36:7:99263572:99302109:1 gene:ENSG00000021461 transcript:ENST00000354829 CCDS5676.1 Length = 503 Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 3/109 (2%) Query: 308 ERVINETLRLLTPNALMVRATTQAVSLQGVALPARCEIVVCPFLVHREANAFARPHAFLP 367 + V+NETLRL + + R + + + GV +P ++V + +H + + P F P Sbjct: 357 DMVVNETLRLFPVVSRVTRVCKKDIEINGVFIPKGLAVMVPIYALHHDPKYWTEPEKFCP 416 Query: 368 SRWETARPSP---YEYFPFGAGGHFCAGRNLALSLIGEVLSTLLSRFDF 413 R+ Y Y PFGAG C G AL+ I + L F F Sbjct: 417 ERFSKKNKDSIDLYRYIPFGAGPRNCIGMRFALTNIKLAVIRALQNFSF 465 >ENSP00000345351 pep:known chromosome:NCBI36:7:99283200:99301560:1 gene:ENSG00000021461 transcript:ENST00000342499 Length = 363 Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 3/109 (2%) Query: 308 ERVINETLRLLTPNALMVRATTQAVSLQGVALPARCEIVVCPFLVHREANAFARPHAFLP 367 + V+NETLRL + + R + + + GV +P ++V + +H + + P F P Sbjct: 217 DMVVNETLRLFPVVSRVTRVCKKDIEING