BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BamMC406_0001[398577] (525 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BamMC406_0002[398577] (368 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BamMC406_0003[398577] (824 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ENSP00000342944 pep:known chromosome:NCBI36:17:35798321:35827695... 122 2e-27 ENSP00000264331 pep:known chromosome:NCBI36:3:25614479:25680792:... 114 5e-25 ENSP00000350217 pep:known chromosome:NCBI36:17:35798321:35827695... 110 5e-24 ENSP00000269577 pep:novel chromosome:NCBI36:17:35798321:35827695... 86 3e-16 >ENSP00000342944 pep:known chromosome:NCBI36:17:35798321:35827695:-1 gene:ENSG00000131747 transcript:ENST00000348049 Length = 1558 Score = 122 bits (306), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 136/562 (24%), Positives = 240/562 (42%), Gaps = 67/562 (11%) Query: 44 GLHHLVFEVLDNSID-EALAGYCNDIHVTIHADNS-ISVTDNGRGIPTDVKMNDKHEPKR 101 GL+ + E+L N+ D + + I VTI +N+ IS+ +NG+GIP + K E K Sbjct: 80 GLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPV---VEHKVE-KM 135 Query: 102 SAAEIVMTELHAGGKFDQNSYKVSGGLHGVGVSCVNALSSWLRLTVRRNGKKHFMEFHRG 161 ++ +L +D + KV+GG +G G N S+ + TV +++ F + Sbjct: 136 YVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFST--KFTVETASREYKKMFKQA 193 Query: 162 VAQERVLEKVDGVEVSPMLVTGDTENRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFL 221 + + + +E+ P G+ T + F D + F DI+A +R Sbjct: 194 ITWMDNMGRAGEMELKPF--NGEDY---TCITFQPDLSKFKMQSLDKDIVALMVR----- 243 Query: 222 NNGVRIRLTDLRSGKEDDFAFAGG----VKGFVEYIN---KTKTNLHPTIFHANGEKDGV 274 R D+ +D F G VKGF Y++ K K + E+ Sbjct: 244 ------RAYDIAGSTKDVKVFLNGNKLPVKGFRSYVDMYLKDKLDETGNSLKVIHEQVNH 297 Query: 275 GVEVAMQWNDSYNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVET 334 EV + ++ + + F N+I GG H+ +++ K + + K V Sbjct: 298 RWEVCLTMSEKGFQQI-SFVNSIATSKGGRHVD---YVADQIVTKLVDVVKKKNKGGVAV 353 Query: 335 TGDDMREGLSCVLSVKVPEPKFSSQTKD------KLVSSEVRAPVEEVVAKALEEFLLET 388 ++ + ++ + P F SQTK+ K S + + + A L L Sbjct: 354 KAHQVKNHMWIFVNALIENPTFDSQTKENMTLQPKSFGSTCQLSEKFIKAAHLYSRFLID 413 Query: 389 PLDAKII----------CGKIVEXXXXXXXXXXXXEMTRRKGVLDGVGLPG--KLADCQE 436 P +I CG IVE ++ ++ + + G KL D + Sbjct: 414 PFFPNMIPNMNLFQAIGCG-IVESILNWVKFKAQVQLNKKCSAVKHNRIKGIPKLDDAND 472 Query: 437 ---KDPAKCEIYIVEGDSA-----GGSAKQGRDRKFQAILPLRGKVLNVEKARYDKLLSS 488 ++ +C + + EGDSA G GRD+ + PLRGK+LNV +A + +++ + Sbjct: 473 AGGRNSTECTLILTEGDSAKTLAVSGLGVVGRDK--YGVFPLRGKILNVREASHKQIMEN 530 Query: 489 EQIVTLVTALGCGIGK---DDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFLYRQMPDM 545 +I ++ +G K D+ +L LRY +I+IMTD D DG+HI+ LL+ F++ P + Sbjct: 531 AEINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSL 590 Query: 546 IERGYVYIAQPPLYKIKAGKDE 567 + ++ P+ K+ K E Sbjct: 591 LRHRFLEEFITPIVKVSKNKQE 612 >ENSP00000264331 pep:known chromosome:NCBI36:3:25614479:25680792:-1 gene:ENSG00000077097 transcript:ENST00000264331 Length = 1626 Score = 114 bits (285), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 138/565 (24%), Positives = 240/565 (42%), Gaps = 77/565 (13%) Query: 33 GMYIGDTSDGTGLHHLVFEVLDNSIDEALAG---YCNDIHVTIHAD-NSISVTDNGRGIP 88 GM + + GL+ + E+L N+ D C I V+I + N IS+ +NG+GIP Sbjct: 90 GMNCREVTFVPGLYKIFDEILVNAADNKQRDKNMTC--IKVSIDPESNIISIWNNGKGIP 147 Query: 89 TDVKMNDKHEPKRSAAEIVMTELHAGGKFDQNSYKVSGGLHGVGVSCVNALSSWLRLTVR 148 + K E K ++ +L +D + KV+GG +G G N S+ + TV Sbjct: 148 V---VEHKVE-KVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFST--KFTVE 201 Query: 149 RNGKKHFMEFHRGV------AQERVLEKVDGVEVSPMLVTGDTENRGTEVHFMADPTIFG 202 K++ F + E ++ DG + T + F D + F Sbjct: 202 TACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDY-------------TCITFQPDLSKFK 248 Query: 203 TVEYHYDILA---KRMRELSFLNNGVRIRLTDLRSGKEDDFAFAGGVKGFVEYINKTKTN 259 + DI+A +R +L+ GV++ + +GK+ G + +V+ K K + Sbjct: 249 MEKLDKDIVALMTRRAYDLAGSCRGVKV----MFNGKK---LPVNGFRSYVDLYVKDKLD 301 Query: 260 LHPTIFHANGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINK 319 E +V + ++ + + F N+I GG H+ + + +V+ K Sbjct: 302 ETGVALKVIHELANERWDVCLTLSEKGFQQI-SFVNSIATTKGGRHVDYV---VDQVVGK 357 Query: 320 YITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQTKDKLV----SSEVRAPVEE 375 I + KA V ++ + ++ + P F SQTK+ + S + + E Sbjct: 358 LIEVVKKKNKAGVSVKPFQVKNHIWVFINCLIENPTFDSQTKENMTLQPKSFGSKCQLSE 417 Query: 376 VVAKALEEFLLETPLDAKIICGKIVEXXXXXXXXXXXXEMTRRKGVLDGVGLPG--KLAD 433 KA CG IVE ++ ++ + + G KL D Sbjct: 418 KFFKAASN------------CG-IVESILNWVKFKAQTQLNKKCSSVKYSKIKGIPKLDD 464 Query: 434 CQE---KDPAKCEIYIVEGDSA-----GGSAKQGRDRKFQAILPLRGKVLNVEKARYDKL 485 + K +C + + EGDSA G GRDR + PLRGK+LNV +A + ++ Sbjct: 465 ANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFPLRGKILNVREASHKQI 522 Query: 486 LSSEQIVTLVTALGCGIGK---DDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFLYRQM 542 + + +I ++ +G K D +L LRY +I+IMTD D DG+HI+ LL+ F++ Sbjct: 523 MENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNW 582 Query: 543 PDMIERGYVYIAQPPLYKIKAGKDE 567 P +++ G++ P+ K K E Sbjct: 583 PSLLKHGFLEEFITPIVKASKNKQE 607 >ENSP00000350217 pep:known chromosome:NCBI36:17:35798321:35827695:-1 gene:ENSG00000131747 transcript:ENST00000357601 Length = 1568 Score = 110 bits (276), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 137/579 (23%), Positives = 241/579 (41%), Gaps = 91/579 (15%) Query: 44 GLHHLVFEVLDNSID-EALAGYCNDIHVTIHADNS-ISVTDNGRGIPTDVKMNDKHEPKR 101 GL+ + E+L N+ D + + I VTI +N+ IS+ +NG+GIP + K E K Sbjct: 80 GLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPV---VEHKVE-KM 135 Query: 102 SAAEIVMTELHAGGKFDQNSYKVSGGLHGVGVSCVNALSSWLRLTVRRNGKKHFMEFHRG 161 ++ +L +D + KV+GG +G G N S+ + TV +++ F + Sbjct: 136 YVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFST--KFTVETASREYKKMFKQA 193 Query: 162 VAQERVLEKVDGVEVSPMLVTGDTENRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFL 221 + + + +E+ P G+ T + F D + F DI+A +R Sbjct: 194 ITWMDNMGRAGEMELKPF--NGEDY---TCITFQPDLSKFKMQSLDKDIVALMVR----- 243 Query: 222 NNGVRIRLTDLRSGKEDDFAFAGG----VKGFVEYIN---KTKTN--------LHPTIFH 266 R D+ +D F G VKGF Y++ K K + +H + H Sbjct: 244 ------RAYDIAGSTKDVKVFLNGNKLPVKGFRSYVDMYLKDKLDETGNSLKVIHEQVNH 297 Query: 267 ------ANGEKDGVGVEVAMQWNDSYNENVLCFTN----------------NIPQRDGGT 304 EK G + N V+ F N + G Sbjct: 298 RWEVCLTMSEK---GFQQISFVNSIATSKVILFLNYMIYLYIYVFLLFLIYKVDLNIGLA 354 Query: 305 HLTGLR---AAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQTK 361 + TG R +++ K + + K V ++ + ++ + P F SQTK Sbjct: 355 YFTGGRHVDYVADQIVTKLVDVVKKKNKGGVAVKAHQVKNHMWIFVNALIENPTFDSQTK 414 Query: 362 DKLVSSEVRAPVEEVVAKALEEFLLETPLDAKIICGKIVEXXXXXXXXXXXXEMTRRKGV 421 + + ++ + E+F+ A I CG IVE ++ ++ Sbjct: 415 ENMT---LQPKSFGSTCQLSEKFI-----KAAIGCG-IVESILNWVKFKAQVQLNKKCSA 465 Query: 422 LDGVGLPG--KLADCQE---KDPAKCEIYIVEGDSA-----GGSAKQGRDRKFQAILPLR 471 + + G KL D + ++ +C + + EGDSA G GRD+ + PLR Sbjct: 466 VKHNRIKGIPKLDDANDAGGRNSTECTLILTEGDSAKTLAVSGLGVVGRDK--YGVFPLR 523 Query: 472 GKVLNVEKARYDKLLSSEQIVTLVTALGCGIGK---DDYNLDKLRYHRIIIMTDADVDGA 528 GK+LNV +A + +++ + +I ++ +G K D+ +L LRY +I+IMTD D DG+ Sbjct: 524 GKILNVREASHKQIMENAEINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGS 583 Query: 529 HIRTLLLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDE 567 HI+ LL+ F++ P ++ ++ P+ K+ K E Sbjct: 584 HIKGLLINFIHHNWPSLLRHRFLEEFITPIVKVSKNKQE 622 >ENSP00000269577 pep:novel chromosome:NCBI36:17:35798321:35827695:-1 gene:ENSG00000131747 transcript:ENST00000269577 Length = 1616 Score = 85.5 bits (210), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 85/153 (55%), Gaps = 14/153 (9%) Query: 426 GLPGKLADCQE---KDPAKCEIYIVEGDSA-----GGSAKQGRDRKFQAILPLRGKVLNV 477 G+P KL D + ++ +C + + EGDSA G GRD+ + PLRGK+LNV Sbjct: 521 GIP-KLDDANDAGGRNSTECTLILTEGDSAKTLAVSGLGVVGRDK--YGVFPLRGKILNV 577 Query: 478 EKARYDKLLSSEQIVTLVTALGCGIGK---DDYNLDKLRYHRIIIMTDADVDGAHIRTLL 534 +A + +++ + +I ++ +G K D+ +L LRY +I+IMTD D DG+HI+ LL Sbjct: 578 REASHKQIMENAEINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLL 637 Query: 535 LTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDE 567 + F++ P ++ ++ P+ K+ K E Sbjct: 638 INFIHHNWPSLLRHRFLEEFITPIVKVSKNKQE 670 Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 66/272 (24%), Positives = 114/272 (41%), Gaps = 32/272 (11%) Query: 44 GLHHLVFEVLDNSID-EALAGYCNDIHVTIHADNS-ISVTDNGRGIPTDVKMNDKHEPKR 101 GL+ + E+L N+ D + + I VTI +N+ IS+ +NG+GIP + K E K Sbjct: 80 GLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPV---VEHKVE-KM 135 Query: 102 SAAEIVMTELHAGGKFDQNSYKVSGGLHGVGVSCVNALSSWLRLTVRRNGKKHFMEFHRG 161 ++ +L +D + KV+GG +G G N S+ + TV +++ F + Sbjct: 136 YVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFST--KFTVETASREYKKMFKQA 193 Query: 162 VAQERVLEKVDGVEVSPMLVTGDTENRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFL 221 + + + +E+ P G+ T + F D + F DI+A +R Sbjct: 194 ITWMDNMGRAGEMELKPF--NGEDY---TCITFQPDLSKFKMQSLDKDIVALMVR----- 243 Query: 222 NNGVRIRLTDLRSGKEDDFAFAGG----VKGFVEYIN---KTKTNLHPTIFHANGEKDGV 274 R D+ +D F G VKGF Y++ K K + E+ Sbjct: 244 ------RAYDIAGSTKDVKVFLNGNKLPVKGFRSYVDMYLKDKLDETGNSLKVIHEQVNH 297 Query: 275 GVEVAMQWNDSYNENVLCFTNNIPQRDGGTHL 306 EV + ++ + + F N+I GG H+ Sbjct: 298 RWEVCLTMSEKGFQQI-SFVNSIATSKGGRHV 328 BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BamMC406_0005[398577] (672 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BamMC406_0006[398577] (501 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BamMC406_0007[398577] (380 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BamMC406_0008[398577] (294 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BamMC406_0009[398577] (128 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BamMC406_0010[398577] (660 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BamMC406_0011[398577] (484 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BamMC406_0012[398577] (375 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BamMC406_0013[398577] (82 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BamMC406_0014[398577] (176 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BamMC406_0015[398577] (363 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ENSP00000241052 pep:known-ccds chromosome:NCBI36:11:34417054:344... 89 6e-18 >ENSP00000241052 pep:known-ccds chromosome:NCBI36:11:34417054:34450176:1 gene:ENSG00000121691 transcript:ENST00000241052 CCDS7891.1 Length = 527 Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 80/295 (27%), Positives = 123/295 (41%), Gaps = 23/295 (7%) Query: 70 HAKGVCVTGYFESNGAASAYSIAPFFKAV--RTPVVGRFALPGGNPYAPDSSVPIRSLAL 127 HAKG GYFE + YS A F+ + +TP+ RF+ G + D+ R A+ Sbjct: 75 HAKGAGAFGYFEVTHDITKYSKAKVFEHIGKKTPIAVRFSTVAGESGSADTVRDPRGFAV 134 Query: 128 KLTAPDGQQWRTGMNAMPVFPVATPKAFYAQLLATRPDPATGKPDPAKVKAFFGAHPET- 186 K DG W N P+F + P F + + + + +P T DP V F+ PE+ Sbjct: 135 KFYTEDGN-WDLVGNNTPIFFIRDPILFPSFIHSQKRNPQTHLKDPDMVWDFWSLRPESL 193 Query: 187 --AAFREWVKGAKPSASYVTESYYGLNAFYFVDAAGKRQAVRWRVVPEQXXXXXXXX--- 241 +F +G ++ YG + F V+A G+ ++ +Q Sbjct: 194 HQVSFLFSDRGIPDGHRHMNG--YGSHTFKLVNANGEAVYCKFHYKTDQGIKNLSVEDAA 251 Query: 242 --XXXXPNVLQQDLTRRIADGAQ-KWKLLVTLAE-------PGDPVDDATKVWPAQRT-T 290 P+ +DL IA G W + + P +P D TKVWP + Sbjct: 252 RLSQEDPDYGIRDLFNAIATGKYPSWTFYIQVMTFNQAETFPFNPFD-LTKVWPHKDYPL 310 Query: 291 IDAGTLVLDRVEPQDSGPCRDVNYDPTVLPQGIQVSGDPLLAARSAAYADSYLRR 345 I G LVL+R + +DP+ +P GI+ S D +L R AY D++ R Sbjct: 311 IPVGKLVLNRNPVNYFAEVEQIAFDPSNMPPGIEASPDKMLQGRLFAYPDTHRHR 365 BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BamMC406_0016[398577] (172 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BamMC406_0017[398577] (253 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BamMC406_0018[398577] (107 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BamMC406_0019[398577] (146 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BamMC406_0020[398577] (293 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BamMC406_0021[398577] (158 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BamMC406_0022[398577] (408 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ENSP00000373356 pep:known chromosome:NCBI36:3:3844104:4483929:-1... 56 7e-08 ENSP00000373355 pep:known-ccds chromosome:NCBI36:3:4377829:44839... 55 1e-07 ENSP00000272902 pep:known-ccds chromosome:NCBI36:3:4377829:44839... 55 1e-07 >ENSP00000373356 pep:known chromosome:NCBI36:3:3844104:4483929:-1 gene:ENSG00000144455 transcript:ENST00000383844 Length = 426 Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 60/143 (41%), Gaps = 15/143 (10%) Query: 189 PGGLVEIGHDGDAFSFDNERPRHTALVRPCEIANRLVTNAEFAAFIADGGYERP------ 242 P G+ +G D D E P + + V+N EF F+ GY Sbjct: 95 PAGVFTMGTDDPQIKQDGEAPARRVTIDAFYMDAYEVSNTEFEKFVNSTGYLTEAEKFGD 154 Query: 243 ----EYWLSDGWATVQREGWSAPPYWIRDDDGDAKTVHAWRAFGLHGVEPLAPDAPVCHV 298 E LS+ T ++ +A P+W+ + + + LH PD PV HV Sbjct: 155 SFVFEGMLSEQVKTNIQQAVAAAPWWLPVKGANWRHPEGPDSTILH-----RPDHPVLHV 209 Query: 299 SFYEAAAYAEWVGARLPTEFEWE 321 S+ +A AY W G RLPTE EWE Sbjct: 210 SWNDAVAYCTWAGKRLPTEAEWE 232 >ENSP00000373355 pep:known-ccds chromosome:NCBI36:3:4377829:4483929:-1 gene:ENSG00000144455 transcript:ENST00000383843 CCDS2564.1 Length = 374 Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 60/143 (41%), Gaps = 15/143 (10%) Query: 189 PGGLVEIGHDGDAFSFDNERPRHTALVRPCEIANRLVTNAEFAAFIADGGYERP------ 242 P G+ +G D D E P + + V+N EF F+ GY Sbjct: 95 PAGVFTMGTDDPQIKQDGEAPARRVTIDAFYMDAYEVSNTEFEKFVNSTGYLTEAEKFGD 154 Query: 243 ----EYWLSDGWATVQREGWSAPPYWIRDDDGDAKTVHAWRAFGLHGVEPLAPDAPVCHV 298 E LS+ T ++ +A P+W+ + + + LH PD PV HV Sbjct: 155 SFVFEGMLSEQVKTNIQQAVAAAPWWLPVKGANWRHPEGPDSTILH-----RPDHPVLHV 209 Query: 299 SFYEAAAYAEWVGARLPTEFEWE 321 S+ +A AY W G RLPTE EWE Sbjct: 210 SWNDAVAYCTWAGKRLPTEAEWE 232 >ENSP00000272902 pep:known-ccds chromosome:NCBI36:3:4377829:4483948:-1 gene:ENSG00000144455 transcript:ENST00000272902 CCDS2564.1 Length = 374 Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 60/143 (41%), Gaps = 15/143 (10%) Query: 189 PGGLVEIGHDGDAFSFDNERPRHTALVRPCEIANRLVTNAEFAAFIADGGYERP------ 242 P G+ +G D D E P + + V+N EF F+ GY Sbjct: 95 PAGVFTMGTDDPQIKQDGEAPARRVTIDAFYMDAYEVSNTEFEKFVNSTGYLTEAEKFGD 154 Query: 243 ----EYWLSDGWATVQREGWSAPPYWIRDDDGDAKTVHAWRAFGLHGVEPLAPDAPVCHV 298 E LS+ T ++ +A P+W+ + + + LH PD PV HV Sbjct: 155 SFVFEGMLSEQVKTNIQQAVAAAPWWLPVKGANWRHPEGPDSTILH-----RPDHPVLHV 209 Query: 299 SFYEAAAYAEWVGARLPTEFEWE 321 S+ +A AY W G RLPTE EWE Sbjct: 210 SWNDAVAYCTWAGKRLPTEAEWE 232 BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BamMC406_0023[398577] (337 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BamMC406_0024[398577] (101 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BamMC406_0025[398577] (50 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BamMC406_0026[398577] (90 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BamMC406_0027[398577] (98 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BamMC406_0028[398577] (1004 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BamMC406_0029[398577] (668 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BamMC406_0030[398577] (409 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BamMC406_0031[398577] (225 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BamMC406_0032[398577] (455 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BamMC406_0033[398577] (282 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= BamMC406_0034[398577] (265 letters) Database: Homo_sapiens.NCBI36.45.pep.all.fa 43,570 sequences; 22,086,541 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ENSP00000354463 pep:known chromosome:NCBI36:1:94230984:94359279:... 98 1e-20 ENSP00000359245 pep:known-ccds chromosome:NCBI36:1:94230981:9435... 97 1e-20 ENSP00000265724 pep:known-ccds chromosome:NCBI36:7:86970884:8718... 96 3e-20 ENSP00000355637 pep:known-ccds chromosome:NCBI36:1:227718952:227... 96 4e-20 ENSP00000263094 pep:known-ccds chromosome:NCBI36:19:992361:10164... 95 7e-20 ENSP00000371487 pep:known chromosome:NCBI36:7:20653570:20761772:... 95 8e-20 ENSP00000258738 pep:known-ccds chromosome:NCBI36:7:20653570:2076... 95 9e-20 ENSP00000371818 pep:known chromosome:NCBI36:16:2265886:2330748:-... 93 3e-19 ENSP00000301732 pep:known-ccds chromosome:NCBI36:16:2265886:2319... 92 4e-19 ENSP00000351376 pep:known chromosome:NCBI36:16:2265886:2319857:-... 92 4e-19 ENSP00000319766 pep:known-ccds chromosome:NCBI36:17:64754387:648... 91 9e-19 ENSP00000351172 pep:known-ccds chromosome:NCBI36:7:86869302:8694... 88 1e-17 ENSP00000352135 pep:known-ccds chromosome:NCBI36:7:86869302:8694... 88 1e-17 ENSP00000363868 pep:known-ccds chromosome:NCBI36:9:106583104:106... 86 5e-17 ENSP00000321973 pep:known chromosome:NCBI36:7:48208389:48657637:... 86 5e-17 ENSP00000265723 pep:known-ccds chromosome:NCBI36:7:86869302:8694... 85 7e-17 ENSP00000295750 pep:known chromosome:NCBI36:2:219782738:21979163... 85 7e-17 ENSP00000363166 pep:known chromosome:NCBI36:2:219782738:21979179... 85 7e-17 ENSP00000265316 pep:known-ccds chromosome:NCBI36:2:219782738:219... 85 7e-17 ENSP00000284425 pep:known-ccds chromosome:NCBI36:17:64586442:646... 85 1e-16 ENSP00000353867 pep:known chromosome:NCBI36:7:150356443:15038077... 84 1e-16 ENSP00000269081 pep:known-ccds chromosome:NCBI36:17:64655772:647... 84 1e-16 ENSP00000351717 pep:known-ccds chromosome:NCBI36:7:150356463:150... 84 1e-16 ENSP00000297504 pep:known chromosome:NCBI36:7:150356470:15037358... 84 2e-16 ENSP00000342216 pep:known-ccds chromosome:NCBI36:17:64482580:645... 83 3e-16 ENSP00000280559 pep:known-ccds chromosome:NCBI36:12:121979500:12... 82 8e-16 ENSP00000348627 pep:known chromosome:NCBI36:17:64375028:64463128... 81 9e-16 ENSP00000346206 pep:known-ccds chromosome:NCBI36:6:32920804:3292... 81 1e-15 ENSP00000372722 pep:known chromosome:NCBI36:c6_QBL:32884550:3289... 81 1e-15 ENSP00000372596 pep:known chromosome:NCBI36:c6_COX:32882385:3289... 81 1e-15 ENSP00000269080 pep:known-ccds chromosome:NCBI36:17:64375028:644... 81 1e-15 ENSP00000280560 pep:known-ccds chromosome:NCBI36:12:121979500:12... 81 1e-15 ENSP00000263817 pep:known chromosome:NCBI36:2:169487694:16959607... 81 1e-15 ENSP00000374312 pep:known-ccds chromosome:NCBI36:2:215505603:215... 80 3e-15 ENSP00000374310 pep:known-ccds chromosome:NCBI36:2:215505603:215... 80 3e-15 ENSP00000374313 pep:known-ccds chromosome:NCBI36:2:215505603:215... 80 3e-15 ENSP00000374314 pep:known-ccds chromosome:NCBI36:2:215505603:215... 80 3e-15 ENSP00000265662 pep:known chromosome:NCBI36:9:139021507:13904256... 79 5e-15 ENSP00000347205 pep:known chromosome:NCBI36:9:139021507:13904319... 79 5e-15 ENSP00000272895 pep:known chromosome:NCBI36:2:215504522:21571139... 79 6e-15 ENSP00000339744 pep:known-ccds chromosome:NCBI36:21:42513077:425... 77 1e-14 ENSP00000354995 pep:known-ccds chromosome:NCBI36:21:42512336:425... 77 2e-14 ENSP00000291524 pep:known-ccds chromosome:NCBI36:21:42509335:425... 77 2e-14 ENSP00000344339 pep:known chromosome:NCBI36:12:121982141:1220169... 75 9e-14 ENSP00000304111 pep:known-ccds chromosome:NCBI36:11:118524960:11... 75 1e-13 ENSP00000343820 pep:known chromosome:NCBI36:21:42549263:42590421... 74 1e-13 ENSP00000272286 pep:known-ccds chromosome:NCBI36:2:43919607:4395... 71 1e-12 ENSP00000367842 pep:known-ccds chromosome:NCBI36:2:43919607:4395... 71 1e-12 ENSP00000003084 pep:known-ccds chromosome:NCBI36:7:116907253:117... 71 1e-12 ENSP00000364032 pep:known chromosome:NCBI36:6:32901165:32914525:... 71 1e-12 ENSP00000372726 pep:known chromosome:NCBI36:c6_QBL:32864749:3287... 71 1e-12 ENSP00000372599 pep:known chromosome:NCBI36:c6_COX:32862586:3287... 71 1e-12 ENSP00000362492 pep:known chromosome:NCBI36:X:74189844:74292840:... 70 2e-12 ENSP00000253577 pep:known-ccds chromosome:NCBI36:X:74189834:7429... 70 2e-12 ENSP00000261200 pep:known-ccds chromosome:NCBI36:12:21845245:219... 70 3e-12 ENSP00000261201 pep:known-ccds chromosome:NCBI36:12:21849375:219... 69 4e-12 ENSP00000261202 pep:known-ccds chromosome:NCBI36:12:21849375:219... 69 5e-12 ENSP00000374468 pep:known-ccds chromosome:NCBI36:11:17371114:174... 69 5e-12 ENSP00000374467 pep:known-ccds chromosome:NCBI36:11:17371114:174... 69 5e-12 ENSP00000368807 pep:known chromosome:NCBI36:11:17371009:17455025... 69 7e-12 ENSP00000367846 pep:known-ccds chromosome:NCBI36:2:43893115:4391... 69 7e-12 ENSP00000260645 pep:known-ccds chromosome:NCBI36:2:43893115:4391... 69 7e-12 ENSP00000303960 pep:novel chromosome:NCBI36:11:17371009:17455025... 67 1e-11 ENSP00000366084 pep:known-ccds chromosome:NCBI36:13:94470090:947... 66 4e-11 ENSP00000237612 pep:known-ccds chromosome:NCBI36:4:89230441:8929... 64 1e-10 ENSP00000285238 pep:known-ccds chromosome:NCBI36:17:46067227:461... 64 2e-10 ENSP00000364034 pep:known-ccds chromosome:NCBI36:6:32897588:3291... 63 3e-10 ENSP00000372727 pep:known chromosome:NCBI36:c6_QBL:32861173:3287... 63 3e-10 ENSP00000372600 pep:known chromosome:NCBI36:c6_COX:32859010:3287... 63 3e-10 ENSP00000322090 pep:known chromosome:NCBI36:16:46674385:46738182... 61 1e-09 ENSP00000296577 pep:known-ccds chromosome:NCBI36:4:146238931:146... 61 1e-09 ENSP00000311030 pep:known-ccds chromosome:NCBI36:16:46674385:467... 61 1e-09 ENSP00000344155 pep:known chromosome:NCBI36:9:139021507:13904319... 59 6e-09 ENSP00000292808 pep:known-ccds chromosome:NCBI36:3:185386580:185... 59 7e-09 ENSP00000205557 pep:known-ccds chromosome:NCBI36:16:16151491:162... 58 9e-09 ENSP00000313603 pep:known-ccds chromosome:NCBI36:6:30647149:3066... 57 2e-08 ENSP00000365729 pep:known chromosome:NCBI36:6:30647149:30667286:... 57 2e-08 ENSP00000373082 pep:known chromosome:NCBI36:c6_QBL:30671532:3069... 57 2e-08 ENSP00000372929 pep:known chromosome:NCBI36:c6_COX:30676271:3069... 57 2e-08 ENSP00000365728 pep:known-ccds chromosome:NCBI36:6:30647149:3066... 57 2e-08 ENSP00000373081 pep:known chromosome:NCBI36:c6_QBL:30671532:3069... 57 2e-08 ENSP00000372927 pep:known chromosome:NCBI36:c6_COX:30676271:3069... 57 2e-08 ENSP00000359478 pep:known-ccds chromosome:NCBI36:10:101532479:10... 57 2e-08 ENSP00000244533 pep:known-ccds chromosome:NCBI36:6:43507467:4352... 57 3e-08 ENSP00000361608 pep:known chromosome:NCBI36:6:43503270:43526142:... 56 3e-08 ENSP00000349017 pep:known-ccds chromosome:NCBI36:16:46758442:468... 52 6e-07 ENSP00000311326 pep:known-ccds chromosome:NCBI36:16:46758442:468... 52 6e-07 ENSP00000263015 pep:known chromosome:NCBI36:16:16009174:16142883... 52 7e-07 ENSP00000263016 pep:known chromosome:NCBI36:16:16009174:16142883... 52 7e-07 ENSP00000263013 pep:known chromosome:NCBI36:16:16009174:16142883... 52 7e-07 ENSP00000263019 pep:known chromosome:NCBI36:16:16009174:16142883... 52 7e-07 ENSP00000263018 pep:known chromosome:NCBI36:16:16009174:16142883... 52 7e-07 ENSP00000263017 pep:known chromosome:NCBI36:16:16009174:16142883... 52 7e-07 ENSP00000364633 pep:novel chromosome:NCBI36:17:64620949:64649610... 52 9e-07 ENSP00000333926 pep:known chromosome:NCBI36:3:185120420:18521842... 50 3e-06 ENSP00000265586 pep:known chromosome:NCBI36:3:185120420:18521842... 50 3e-06 ENSP00000205558 pep:known chromosome:NCBI36:16:16151491:16167301... 49 7e-06 ENSP00000371507 pep:known chromosome:NCBI36:7:20653518:20666535:... 47 2e-05 ENSP00000360666 pep:novel chromosome:NCBI36:9:139029355:13904319... 46 4e-05 >ENSP00000354463 pep:known chromosome:NCBI36:1:94230984:94359279:-1 gene:ENSG00000198691 transcript:ENST00000361520 Length = 2281 Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 59/212 (27%), Positives = 112/212 (52%), Gaps = 9/212 (4%) Query: 10 PAIEFRNVSCRFISPEGKATVALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPV 69 P + +N+ + P G+ A+ +++ + A +G G GK+TTL+++TGLL P Sbjct: 927 PGVCVKNL-VKIFEPCGRP--AVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPT 983 Query: 70 SGEVRVMGRPV----DGIDPRIGFVFQADAVFPWRNVIDNVAAGPLFRGRSKDVAYTQAE 125 SG V V GR + D + +G Q + +F V +++ +G+S++ A + E Sbjct: 984 SGTVLVGGRDIETSLDAVRQSLGMCPQHNILFHHLTVAEHMLFYAQLKGKSQEEAQLEME 1043 Query: 126 EWIRKVGLDKFTKHYPHQLSGGMRKRVALAQTFINQPEILLMDEPFSALDMQTRTLMQDE 185 + GL LSGGM++++++A F+ +++++DEP S +D +R + D Sbjct: 1044 AMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVILDEPTSGVDPYSRRSIWDL 1103 Query: 186 LLQLWSANKGSVVFVTHDLEEAIALADRVFVL 217 LL+ S +++ TH ++EA L DR+ ++ Sbjct: 1104 LLKYRSGR--TIIMSTHHMDEADLLGDRIAII 1133 Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 48/202 (23%), Positives = 93/202 (46%), Gaps = 11/202 (5%) Query: 26 GKATVALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVSGEVRVMGRPV----D 81 G ++ A+ + V GE ++G G GK+TT ++TG SG+ V G+ + Sbjct: 1949 GTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNIS 2008 Query: 82 GIDPRIGFVFQADAVFPWRNVIDNVAAGPLFRGRSKDVAYTQAEEWIRKVGLDKFTKHYP 141 + +G+ Q DA+ +++ RG + A I+ +GL + Sbjct: 2009 EVHQNMGYCPQFDAIDELLTGREHLYLYARLRGVPAEEIEKVANWSIKSLGLTVYADCLA 2068 Query: 142 HQLSGGMRKRVALAQTFINQPEILLMDEPFSALDMQTRTLMQDELLQLWSANKGSVVFVT 201 SGG +++++ A I P ++L+DEP + +D Q R ++ + ++ + + +VV + Sbjct: 2069 GTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNVIVSIIREGR-AVVLTS 2127 Query: 202 HDL------EEAIALADRVFVL 217 H EE AL R+ ++ Sbjct: 2128 HRQEIPRAGEECEALCTRLAIM 2149 >ENSP00000359245 pep:known-ccds chromosome:NCBI36:1:94230981:94359276:-1 gene:ENSG00000198691 transcript:ENST00000370225 CCDS747.1 Length = 2273 Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 59/212 (27%), Positives = 112/212 (52%), Gaps = 9/212 (4%) Query: 10 PAIEFRNVSCRFISPEGKATVALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPV 69 P + +N+ + P G+ A+ +++ + A +G G GK+TTL+++TGLL P Sbjct: 927 PGVCVKNL-VKIFEPCGRP--AVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPT 983 Query: 70 SGEVRVMGRPV----DGIDPRIGFVFQADAVFPWRNVIDNVAAGPLFRGRSKDVAYTQAE 125 SG V V GR + D + +G Q + +F V +++ +G+S++ A + E Sbjct: 984 SGTVLVGGRDIETSLDAVRQSLGMCPQHNILFHHLTVAEHMLFYAQLKGKSQEEAQLEME 1043 Query: 126 EWIRKVGLDKFTKHYPHQLSGGMRKRVALAQTFINQPEILLMDEPFSALDMQTRTLMQDE 185 + GL LSGGM++++++A F+ +++++DEP S +D +R + D Sbjct: 1044 AMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVILDEPTSGVDPYSRRSIWDL 1103 Query: 186 LLQLWSANKGSVVFVTHDLEEAIALADRVFVL 217 LL+ S +++ TH ++EA L DR+ ++ Sbjct: 1104 LLKYRSGR--TIIMSTHHMDEADLLGDRIAII 1133 Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 48/196 (24%), Positives = 94/196 (47%), Gaps = 5/196 (2%) Query: 26 GKATVALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVSGEVRVMGRPV----D 81 G ++ A+ + V GE ++G G GK+TT ++TG SG+ V G+ + Sbjct: 1949 GTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNIS 2008 Query: 82 GIDPRIGFVFQADAVFPWRNVIDNVAAGPLFRGRSKDVAYTQAEEWIRKVGLDKFTKHYP 141 + +G+ Q DA+ +++ RG + A I+ +GL + Sbjct: 2009 EVHQNMGYCPQFDAIDELLTGREHLYLYARLRGVPAEEIEKVANWSIKSLGLTVYADCLA 2068 Query: 142 HQLSGGMRKRVALAQTFINQPEILLMDEPFSALDMQTRTLMQDELLQLWSANKGSVVFVT 201 SGG +++++ A I P ++L+DEP + +D Q R ++ + ++ + + +VV + Sbjct: 2069 GTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNVIVSIIREGR-AVVLTS 2127 Query: 202 HDLEEAIALADRVFVL 217 H +EE AL R+ ++ Sbjct: 2128 HSMEECEALCTRLAIM 2143 >ENSP00000265724 pep:known-ccds chromosome:NCBI36:7:86970884:87180500:-1 gene:ENSG00000085563 transcript:ENST00000265724 CCDS5608.1 Length = 1280 Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 67/210 (31%), Positives = 107/210 (50%), Gaps = 29/210 (13%) Query: 12 IEFRNVSCRFISPEGKATVALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVSG 71 +EFRNV F P K L+ ++ V G+ +A+VG +GCGKSTT+ L+ L P G Sbjct: 392 LEFRNV--HFSYPSRKEVKILKGLNLKVQSGQTVALVGNSGCGKSTTVQLMQRLYDPTEG 449 Query: 72 EVRVMGRPVDGIDPR-----IGFVFQADAVFPWRNVIDNVAAGPLFRGRSKDVAYTQAEE 126 V V G+ + I+ R IG V Q +F + +N+ G ++V + E+ Sbjct: 450 MVSVDGQDIRTINVRFLREIIGVVSQEPVLFA-TTIAENIRYG------RENVTMDEIEK 502 Query: 127 WIRKVGLDKFTKHYPH-----------QLSGGMRKRVALAQTFINQPEILLMDEPFSALD 175 +++ F PH QLSGG ++R+A+A+ + P+ILL+DE SALD Sbjct: 503 AVKEANAYDFIMKLPHKFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALD 562 Query: 176 MQTRTLMQDELLQLWSANKG-SVVFVTHDL 204 ++ ++Q + L A KG + + + H L Sbjct: 563 TESEAVVQ---VALDKARKGRTTIVIAHRL 589 Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 52/171 (30%), Positives = 93/171 (54%), Gaps = 21/171 (12%) Query: 32 LRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVSGEVRVMGRPVDGID-----PR 86 L+ S+ V +G+ +A+VG +GCGKST + L+ P++G+V + G+ + ++ Sbjct: 1053 LQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPLAGKVLLDGKEIKRLNVQWLRAH 1112 Query: 87 IGFVFQADAVFPWRNVIDNVAAGPLFRGRSKDVAYTQAEEWIRKVGLDKFTKHYPH---- 142 +G V Q +F ++ +N+A G R S++ A+E + F + P+ Sbjct: 1113 LGIVSQEPILFDC-SIAENIAYGDNSRVVSQEEIVRAAKE----ANIHAFIESLPNKYST 1167 Query: 143 -------QLSGGMRKRVALAQTFINQPEILLMDEPFSALDMQTRTLMQDEL 186 QLSGG ++R+A+A+ + QP ILL+DE SALD ++ ++Q+ L Sbjct: 1168 KVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEAL 1218 >ENSP00000355637 pep:known-ccds chromosome:NCBI36:1:227718952:227761065:-1 gene:ENSG00000135776 transcript:ENST00000344517 CCDS1580.1 Length = 738 Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 77/244 (31%), Positives = 121/244 (49%), Gaps = 31/244 (12%) Query: 11 AIEFRNVSCRFISPEGKATVALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVS 70 A+EF+NV F P +DFS+S+ G A+VGP+G GKST L+L+ L P S Sbjct: 491 ALEFKNV--HFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPAS 548 Query: 71 GEVRVMGRPVDGIDP-----RIGFVFQADAVFPWRNVIDNVAAGPLFRGRSKDVAYTQAE 125 G + + G + ++P +IG V Q +F ++ +N+A G + D + AE Sbjct: 549 GTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSC-SIAENIAYG------ADDPSSVTAE 601 Query: 126 EWIRKVGLDK---FTKHYPHQ-----------LSGGMRKRVALAQTFINQPEILLMDEPF 171 E R + F +++P LSGG ++R+A+A+ + P+ILL+DE Sbjct: 602 EIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEAT 661 Query: 172 SALDMQTRTLMQDELLQLWSANKGSVVFVTHDLEEAIALADRVFVLTARPATLKRVYEID 231 SALD + L+Q+ L +L +V+ + H L I A+ V VL T +E Sbjct: 662 SALDAENEYLVQEALDRLMDGR--TVLVIAHRL-STIKNANMVAVLDQGKITEYGKHEEL 718 Query: 232 LPRP 235 L +P Sbjct: 719 LSKP 722 >ENSP00000263094 pep:known-ccds chromosome:NCBI36:19:992361:1016424:1 gene:ENSG00000064687 transcript:ENST00000263094 CCDS12055.1 Length = 2146 Score = 95.1 bits (235), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 61/215 (28%), Positives = 108/215 (50%), Gaps = 9/215 (4%) Query: 9 TPAIEFRNVSCRFISPEGKATVALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKP 68 +P + R++ RF G ALR S+ +G A +G G GK+TTL++++GL P Sbjct: 804 SPGVSVRSLEKRF---PGSPQPALRGLSLDFYQGHITAFLGHNGAGKTTTLSILSGLFPP 860 Query: 69 VSGEVRVMGRPV----DGIDPRIGFVFQADAVFPWRNVIDNVAAGPLFRGRSKDVAYTQA 124 G ++G V I P +G Q + +F V ++V +G S V + Sbjct: 861 SGGSAFILGHDVRSSMAAIRPHLGVCPQYNVLFDMLTVDEHVWFYGRLKGLSAAVVGPEQ 920 Query: 125 EEWIRKVGLDKFTKHYPHQLSGGMRKRVALAQTFINQPEILLMDEPFSALDMQTRTLMQD 184 + ++ VGL LSGGM++++++A F+ +++++DEP + +D +R + + Sbjct: 921 DRLLQDVGLVSKQSVQTRHLSGGMQRKLSVAIAFVGGSQVVILDEPTAGVDPASRRGIWE 980 Query: 185 ELLQLWSANKGSVVFVTHDLEEAIALADRVFVLTA 219 LL+ +++ TH L+EA L DRV V+ Sbjct: 981 LLLKYREGR--TLILSTHHLDEAELLGDRVAVVAG 1013 Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 46/196 (23%), Positives = 89/196 (45%), Gaps = 5/196 (2%) Query: 26 GKATVALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVSGEVRVMGRPV----D 81 G+ A+ + + GE ++G G GK++T ++TG GE + G V Sbjct: 1804 GQRMPAVDRLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLASRGEAVLAGHSVAREPS 1863 Query: 82 GIDPRIGFVFQADAVFPWRNVIDNVAAGPLFRGRSKDVAYTQAEEWIRKVGLDKFTKHYP 141 +G+ Q+DA+F +++ RG + A + ++GL + Sbjct: 1864 AAHLSMGYCPQSDAIFELLTGREHLELLARLRGVPEAQVAQTAGSGLARLGLSWYADRPA 1923 Query: 142 HQLSGGMRKRVALAQTFINQPEILLMDEPFSALDMQTRTLMQDELLQLWSANKGSVVFVT 201 SGG ++++A A + P ++ +DEP + +D R + + LL + + SV+ + Sbjct: 1924 GTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNSLLAVVREGR-SVMLTS 1982 Query: 202 HDLEEAIALADRVFVL 217 H +EE AL R+ ++ Sbjct: 1983 HSMEECEALCSRLAIM 1998 >ENSP00000371487 pep:known chromosome:NCBI36:7:20653570:20761772:1 gene:ENSG00000004846 transcript:ENST00000382055 Length = 831 Score = 94.7 bits (234), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 71/219 (32%), Positives = 111/219 (50%), Gaps = 20/219 (9%) Query: 12 IEFRNVSCRFISPEGKATVALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVSG 71 +EFR VS F P LR S+S+ RG+ +A VG +GCGKST++ L+ L PV G Sbjct: 589 LEFREVS--FFYPCRPDVFILRGLSLSIERGKTVAFVGSSGCGKSTSVQLLQRLYDPVQG 646 Query: 72 EVRVMGRPVDGIDPRIGFVFQADAVFPWRNVIDN--VAAGPLFRGRSKDVAYTQAEEWIR 129 +V G VD + + ++ A+ P V+ N +A + S+ V + +E Sbjct: 647 QVLFDG--VDAKELNVQWLRSQIAIVPQEPVLFNCSIAENIAYGDNSRVVPLDEIKEAAN 704 Query: 130 KVGLDKFTKHYPH-----------QLSGGMRKRVALAQTFINQPEILLMDEPFSALDMQT 178 + F + P QLSGG ++R+A+A+ + +P+ILL+DE SALD + Sbjct: 705 AANIHSFIEGLPEKYNTQVGLKGAQLSGGQKQRLAIARALLQKPKILLLDEATSALDNDS 764 Query: 179 RTLMQDELLQLWSANKGSVVFVTHDLEEAIALADRVFVL 217 ++Q L + + + + VTH L AI AD + VL Sbjct: 765 EKVVQHALDKARTGR--TCLVVTHRL-SAIQNADLIVVL 800 Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 50/180 (27%), Positives = 83/180 (46%), Gaps = 28/180 (15%) Query: 55 KSTTLNLITGLLKPVSGEVRVMGRPVDGIDPR-----IGFVFQADAVFPWRNVIDNVAAG 109 KST + L+ L P G + V + ++ R IG V Q +F + +N+ G Sbjct: 1 KSTVVQLLQRLYDPDDGFIMVDENDIRALNVRHYRDHIGVVSQEPVLF-GTTISNNIKYG 59 Query: 110 PLFRGRSKDVAYTQAEEWIRKVGLDKFTKHYPH-----------QLSGGMRKRVALAQTF 158 DV + E R+ F +P+ Q+SGG ++R+A+A+ Sbjct: 60 ------RDDVTDEEMERAAREANAYDFIMEFPNKFNTLVGEKGAQMSGGQKQRIAIARAL 113 Query: 159 INQPEILLMDEPFSALDMQTRTLMQDELLQLWSANKG-SVVFVTHDLEEAIALADRVFVL 217 + P+IL++DE SALD ++++ +Q L A+KG + + V H L I AD + L Sbjct: 114 VRNPKILILDEATSALDSESKSAVQ---AALEKASKGRTTIVVAHRL-STIRSADLIVTL 169 >ENSP00000258738 pep:known-ccds chromosome:NCBI36:7:20653570:20761772:1 gene:ENSG00000004846 transcript:ENST00000258738 CCDS5371.1 Length = 812 Score = 94.7 bits (234), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 71/219 (32%), Positives = 111/219 (50%), Gaps = 20/219 (9%) Query: 12 IEFRNVSCRFISPEGKATVALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVSG 71 +EFR VS F P LR S+S+ RG+ +A VG +GCGKST++ L+ L PV G Sbjct: 570 LEFREVS--FFYPCRPDVFILRGLSLSIERGKTVAFVGSSGCGKSTSVQLLQRLYDPVQG 627 Query: 72 EVRVMGRPVDGIDPRIGFVFQADAVFPWRNVIDN--VAAGPLFRGRSKDVAYTQAEEWIR 129 +V G VD + + ++ A+ P V+ N +A + S+ V + +E Sbjct: 628 QVLFDG--VDAKELNVQWLRSQIAIVPQEPVLFNCSIAENIAYGDNSRVVPLDEIKEAAN 685 Query: 130 KVGLDKFTKHYPH-----------QLSGGMRKRVALAQTFINQPEILLMDEPFSALDMQT 178 + F + P QLSGG ++R+A+A+ + +P+ILL+DE SALD + Sbjct: 686 AANIHSFIEGLPEKYNTQVGLKGAQLSGGQKQRLAIARALLQKPKILLLDEATSALDNDS 745 Query: 179 RTLMQDELLQLWSANKGSVVFVTHDLEEAIALADRVFVL 217 ++Q L + + + + VTH L AI AD + VL Sbjct: 746 EKVVQHALDKARTGR--TCLVVTHRL-SAIQNADLIVVL 781 Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 23/144 (15%) Query: 86 RIGFVFQADAVFPWRNVIDNVAAGPLFRGRSKDVAYTQAEEWIRKVGLDKFTKHYPH--- 142 IG V Q +F + +N+ G DV + E R+ F +P+ Sbjct: 18 HIGVVSQEPVLF-GTTISNNIKYG------RDDVTDEEMERAAREANAYDFIMEFPNKFN 70 Query: 143 --------QLSGGMRKRVALAQTFINQPEILLMDEPFSALDMQTRTLMQDELLQLWSANK 194 Q+SGG ++R+A+A+ + P+IL++DE SALD ++++ +Q L + A+K Sbjct: 71 TLVGEKGAQMSGGQKQRIAIARALVRNPKILILDEATSALDSESKSAVQAALEK---ASK 127 Query: 195 G-SVVFVTHDLEEAIALADRVFVL 217 G + + V H L I AD + L Sbjct: 128 GRTTIVVAHRL-STIRSADLIVTL 150 >ENSP00000371818 pep:known chromosome:NCBI36:16:2265886:2330748:-1 gene:ENSG00000167972 transcript:ENST00000382381 Length = 1708 Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 55/195 (28%), Positives = 104/195 (53%), Gaps = 6/195 (3%) Query: 27 KATVALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVSGEVRVMGRPVD----G 82 K A+RD ++++ G+ ++G G GK+TTL+++TGL P SG + G + Sbjct: 548 KDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDMVQ 607 Query: 83 IDPRIGFVFQADAVFPWRNVIDNVAAGPLFRGRSKDVAYTQAEEWIRKVGLDKFTKHYPH 142 I +G Q D +F V +++ +G S+ + ++ + +GL+ Sbjct: 608 IRKSLGLCPQHDILFDNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSR 667 Query: 143 QLSGGMRKRVALAQTFINQPEILLMDEPFSALDMQTRTLMQDELLQLWSANKGSVVFVTH 202 LSGGMR+++++ I ++L++DEP S +D +R + D LLQ +++ ++V TH Sbjct: 668 FLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWD-LLQRQKSDR-TIVLTTH 725 Query: 203 DLEEAIALADRVFVL 217 ++EA L DR+ ++ Sbjct: 726 FMDEADLLGDRIAIM 740 Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 47/192 (24%), Positives = 91/192 (47%), Gaps = 5/192 (2%) Query: 30 VALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVSGEVRVMGRPVDG----IDP 85 +A+ S++V +GE ++G G GK+TT ++TG SG+ V G + + Sbjct: 1401 LAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSDVGKVRQ 1460 Query: 86 RIGFVFQADAVFPWRNVIDNVAAGPLFRGRSKDVAYTQAEEWIRKVGLDKFTKHYPHQLS 145 RIG+ Q DA+ + + RG + E +R + L+ S Sbjct: 1461 RIGYCPQFDALLDHMTGREMLVMYARLRGIPERHIGACVENTLRGLLLEPHANKLVRTYS 1520 Query: 146 GGMRKRVALAQTFINQPEILLMDEPFSALDMQTRTLMQDELLQLWSANKGSVVFVTHDLE 205 GG +++++ I +P ++ +DEP + +D R L+ D + + + K +++ +H +E Sbjct: 1521 GGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWDTVARARESGK-AIIITSHSME 1579 Query: 206 EAIALADRVFVL 217 E AL R+ ++ Sbjct: 1580 ECEALCTRLAIM 1591 >ENSP00000301732 pep:known-ccds chromosome:NCBI36:16:2265886:2319857:-1 gene:ENSG00000167972 transcript:ENST00000301732 CCDS10466.1 Length = 1704 Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 55/195 (28%), Positives = 104/195 (53%), Gaps = 6/195 (3%) Query: 27 KATVALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVSGEVRVMGRPVD----G 82 K A+RD ++++ G+ ++G G GK+TTL+++TGL P SG + G + Sbjct: 544 KDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDMVQ 603 Query: 83 IDPRIGFVFQADAVFPWRNVIDNVAAGPLFRGRSKDVAYTQAEEWIRKVGLDKFTKHYPH 142 I +G Q D +F V +++ +G S+ + ++ + +GL+ Sbjct: 604 IRKSLGLCPQHDILFDNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSR 663 Query: 143 QLSGGMRKRVALAQTFINQPEILLMDEPFSALDMQTRTLMQDELLQLWSANKGSVVFVTH 202 LSGGMR+++++ I ++L++DEP S +D +R + D LLQ +++ ++V TH Sbjct: 664 FLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWD-LLQRQKSDR-TIVLTTH 721 Query: 203 DLEEAIALADRVFVL 217 ++EA L DR+ ++ Sbjct: 722 FMDEADLLGDRIAIM 736 Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 47/192 (24%), Positives = 91/192 (47%), Gaps = 5/192 (2%) Query: 30 VALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVSGEVRVMGRPVDG----IDP 85 +A+ S++V +GE ++G G GK+TT ++TG SG+ V G + + Sbjct: 1397 LAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSDVGKVRQ 1456 Query: 86 RIGFVFQADAVFPWRNVIDNVAAGPLFRGRSKDVAYTQAEEWIRKVGLDKFTKHYPHQLS 145 RIG+ Q DA+ + + RG + E +R + L+ S Sbjct: 1457 RIGYCPQFDALLDHMTGREMLVMYARLRGIPERHIGACVENTLRGLLLEPHANKLVRTYS 1516 Query: 146 GGMRKRVALAQTFINQPEILLMDEPFSALDMQTRTLMQDELLQLWSANKGSVVFVTHDLE 205 GG +++++ I +P ++ +DEP + +D R L+ D + + + K +++ +H +E Sbjct: 1517 GGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWDTVARARESGK-AIIITSHSME 1575 Query: 206 EAIALADRVFVL 217 E AL R+ ++ Sbjct: 1576 ECEALCTRLAIM 1587 >ENSP00000351376 pep:known chromosome:NCBI36:16:2265886:2319857:-1 gene:ENSG00000167972 transcript:ENST00000358568 Length = 1704 Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 55/195 (28%), Positives = 104/195 (53%), Gaps = 6/195 (3%) Query: 27 KATVALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVSGEVRVMGRPVD----G 82 K A+RD ++++ G+ ++G G GK+TTL+++TGL P SG + G + Sbjct: 544 KDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDMVQ 603 Query: 83 IDPRIGFVFQADAVFPWRNVIDNVAAGPLFRGRSKDVAYTQAEEWIRKVGLDKFTKHYPH 142 I +G Q D +F V +++ +G S+ + ++ + +GL+ Sbjct: 604 IRKSLGLCPQHDILFDNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSR 663 Query: 143 QLSGGMRKRVALAQTFINQPEILLMDEPFSALDMQTRTLMQDELLQLWSANKGSVVFVTH 202 LSGGMR+++++ I ++L++DEP S +D +R + D LLQ +++ ++V TH Sbjct: 664 FLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWD-LLQRQKSDR-TIVLTTH 721 Query: 203 DLEEAIALADRVFVL 217 ++EA L DR+ ++ Sbjct: 722 FMDEADLLGDRIAIM 736 Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 47/192 (24%), Positives = 91/192 (47%), Gaps = 5/192 (2%) Query: 30 VALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVSGEVRVMGRPVDG----IDP 85 +A+ S++V +GE ++G G GK+TT ++TG SG+ V G + + Sbjct: 1397 LAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSDVGKVRQ 1456 Query: 86 RIGFVFQADAVFPWRNVIDNVAAGPLFRGRSKDVAYTQAEEWIRKVGLDKFTKHYPHQLS 145 RIG+ Q DA+ + + RG + E +R + L+ S Sbjct: 1457 RIGYCPQFDALLDHMTGREMLVMYARLRGIPERHIGACVENTLRGLLLEPHANKLVRTYS 1516 Query: 146 GGMRKRVALAQTFINQPEILLMDEPFSALDMQTRTLMQDELLQLWSANKGSVVFVTHDLE 205 GG +++++ I +P ++ +DEP + +D R L+ D + + + K +++ +H +E Sbjct: 1517 GGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWDTVARARESGK-AIIITSHSME 1575 Query: 206 EAIALADRVFVL 217 E AL R+ ++ Sbjct: 1576 ECEALCTRLAIM 1587 >ENSP00000319766 pep:known-ccds chromosome:NCBI36:17:64754387:64834885:-1 gene:ENSG00000154265 transcript:ENST00000320086 CCDS11685.1 Length = 1642 Score = 91.3 bits (225), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 59/200 (29%), Positives = 105/200 (52%), Gaps = 8/200 (4%) Query: 25 EGKATVALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVSGEVRVMGRPVDGID 84 +G+ ALR+ S + G+ A++G +G GKST +N++ GL P G + G V ID Sbjct: 490 KGENVEALRNLSFDIYEGQITALLGHSGTGKSTLMNILCGLCPPSDGFASIYGHRVSEID 549 Query: 85 ------PRIGFVFQADAVFPWRNVIDNVAAGPLFRGRSKDVAYTQAEEWIRKVGLDKFTK 138 IG Q D F V +N++ +G + + ++ + + + Sbjct: 550 EMFEARKMIGICPQLDIHFDVLTVEENLSILASIKGIPANNIIQEVQKVLLDLDMQTIKD 609 Query: 139 HYPHQLSGGMRKRVALAQTFINQPEILLMDEPFSALDMQTRTLMQDELLQLWSANKGSVV 198 + +LSGG +++++L + P+ILL+DEP + +D +R ++ + LL+ AN+ + V Sbjct: 610 NQAKKLSGGQKRKLSLGIAVLGNPKILLLDEPTAGMDPCSRHIVWN-LLKYRKANRVT-V 667 Query: 199 FVTHDLEEAIALADRVFVLT 218 F TH ++EA LADR V++ Sbjct: 668 FSTHFMDEADILADRKAVIS 687 Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 46/195 (23%), Positives = 95/195 (48%), Gaps = 5/195 (2%) Query: 30 VALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVSGEVRVMGRPVDGID----- 84 VA + S V +GE + ++GP G GKST +N++ G ++P SG+V + + + Sbjct: 1314 VATKYISFCVKKGEILGLLGPNGAGKSTIINILVGDIEPTSGQVFLGDYSSETSEDDDSL 1373 Query: 85 PRIGFVFQADAVFPWRNVIDNVAAGPLFRGRSKDVAYTQAEEWIRKVGLDKFTKHYPHQL 144 +G+ Q + ++P + ++ +G S + L + + +L Sbjct: 1374 KCMGYCPQINPLWPDTTLQEHFEIYGAVKGMSASDMKEVISRITHALDLKEHLQKTVKKL 1433 Query: 145 SGGMRKRVALAQTFINQPEILLMDEPFSALDMQTRTLMQDELLQLWSANKGSVVFVTHDL 204 G+++++ A + + P+I L+DEP + +D + + M + + K + + TH + Sbjct: 1434 PAGIKRKLCFALSMLGNPQITLLDEPSTGMDPKAKQHMWRAIRTAFKNRKRAAILTTHYM 1493 Query: 205 EEAIALADRVFVLTA 219 EEA A+ DRV ++ + Sbjct: 1494 EEAEAVCDRVAIMVS 1508 >ENSP00000351172 pep:known-ccds chromosome:NCBI36:7:86869302:86942991:-1 gene:ENSG00000005471 transcript:ENST00000358400 CCDS5607.1 Length = 1232 Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 54/171 (31%), Positives = 93/171 (54%), Gaps = 21/171 (12%) Query: 32 LRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVSGEVRVMGRPVDGID-----PR 86 L+ S+ V +G+ +A+VG +GCGKST + L+ P++G V + G+ ++ + Sbjct: 1005 LQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPLAGTVLLDGQEAKKLNVQWLRAQ 1064 Query: 87 IGFVFQADAVFPWRNVIDNVAAGPLFRGRSKDVAYTQAEEWIRKVGLDKFTKHYPH---- 142 +G V Q +F ++ +N+A G R S+D + A + + F + PH Sbjct: 1065 LGIVSQEPILFDC-SIAENIAYGDNSRVVSQDEIVSAA----KAANIHPFIETLPHKYET 1119 Query: 143 -------QLSGGMRKRVALAQTFINQPEILLMDEPFSALDMQTRTLMQDEL 186 QLSGG ++R+A+A+ I QP+ILL+DE SALD ++ ++Q+ L Sbjct: 1120 RVGDKGTQLSGGQKQRIAIARALIRQPQILLLDEATSALDTESEKVVQEAL 1170 Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 60/188 (31%), Positives = 92/188 (48%), Gaps = 19/188 (10%) Query: 12 IEFRNVSCRFISPEGKATVALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVSG 71 +EF +V F P L+ ++ V G+ +A+VG +GCGKSTT+ LI L P G Sbjct: 394 LEFNDV--HFSYPSRANVKILKGLNLKVQSGQTVALVGSSGCGKSTTVQLIQRLYDPDEG 451 Query: 72 EVRVMGRPVDGIDPR-----IGFVFQADAVFPWRNVIDNVAAGPLFRGR------SKDVA 120 + + G+ + + IG V Q +F + +N+ G RG K V Sbjct: 452 TINIDGQDIRNFNVNYLREIIGVVSQEPVLFS-TTIAENICYG---RGNVTMDEIKKAVK 507 Query: 121 YTQAEEWIRKV--GLDKFTKHYPHQLSGGMRKRVALAQTFINQPEILLMDEPFSALDMQT 178 A E+I K+ D QLSGG ++R+A+A+ + P+ILL+DE SALD ++ Sbjct: 508 EANAYEFIMKLPQKFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTES 567 Query: 179 RTLMQDEL 186 +Q L Sbjct: 568 EAEVQAAL 575 >ENSP00000352135 pep:known-ccds chromosome:NCBI36:7:86869302:86942991:-1 gene:ENSG00000005471 transcript:ENST00000359206 CCDS5605.1 Length = 1279 Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 54/171 (31%), Positives = 93/171 (54%), Gaps = 21/171 (12%) Query: 32 LRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVSGEVRVMGRPVDGID-----PR 86 L+ S+ V +G+ +A+VG +GCGKST + L+ P++G V + G+ ++ + Sbjct: 1052 LQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPLAGTVLLDGQEAKKLNVQWLRAQ 1111 Query: 87 IGFVFQADAVFPWRNVIDNVAAGPLFRGRSKDVAYTQAEEWIRKVGLDKFTKHYPH---- 142 +G V Q +F ++ +N+A G R S+D + A + + F + PH Sbjct: 1112 LGIVSQEPILFDC-SIAENIAYGDNSRVVSQDEIVSAA----KAANIHPFIETLPHKYET 1166 Query: 143 -------QLSGGMRKRVALAQTFINQPEILLMDEPFSALDMQTRTLMQDEL 186 QLSGG ++R+A+A+ I QP+ILL+DE SALD ++ ++Q+ L Sbjct: 1167 RVGDKGTQLSGGQKQRIAIARALIRQPQILLLDEATSALDTESEKVVQEAL 1217 Score = 85.1 bits (209), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 60/188 (31%), Positives = 92/188 (48%), Gaps = 19/188 (10%) Query: 12 IEFRNVSCRFISPEGKATVALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVSG 71 +EF +V F P L+ ++ V G+ +A+VG +GCGKSTT+ LI L P G Sbjct: 394 LEFNDV--HFSYPSRANVKILKGLNLKVQSGQTVALVGSSGCGKSTTVQLIQRLYDPDEG 451 Query: 72 EVRVMGRPVDGIDPR-----IGFVFQADAVFPWRNVIDNVAAGPLFRGR------SKDVA 120 + + G+ + + IG V Q +F + +N+ G RG K V Sbjct: 452 TINIDGQDIRNFNVNYLREIIGVVSQEPVLFS-TTIAENICYG---RGNVTMDEIKKAVK 507 Query: 121 YTQAEEWIRKV--GLDKFTKHYPHQLSGGMRKRVALAQTFINQPEILLMDEPFSALDMQT 178 A E+I K+ D QLSGG ++R+A+A+ + P+ILL+DE SALD ++ Sbjct: 508 EANAYEFIMKLPQKFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTES 567 Query: 179 RTLMQDEL 186 +Q L Sbjct: 568 EAEVQAAL 575 >ENSP00000363868 pep:known-ccds chromosome:NCBI36:9:106583104:106730339:-1 gene:ENSG00000165029 transcript:ENST00000374736 CCDS6762.1 Length = 2261 Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 50/194 (25%), Positives = 103/194 (53%), Gaps = 7/194 (3%) Query: 30 VALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVSGEVRVMGRPV----DGIDP 85 VA+ +++ G+ + +G G GK+TT++++TGL P SG ++G+ + I Sbjct: 914 VAVDGLALNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSEMSTIRQ 973 Query: 86 RIGFVFQADAVFPWRNVIDNVAAGPLFRGRSKDVAYTQAEEWIRKVGL-DKFTKHYPHQL 144 +G Q + +F V +++ +G S+ + E+ VGL K QL Sbjct: 974 NLGVCPQHNVLFDMLTVEEHIWFYARLKGLSEKHVKAEMEQMALDVGLPSSKLKSKTSQL 1033 Query: 145 SGGMRKRVALAQTFINQPEILLMDEPFSALDMQTRTLMQDELLQLWSANKGSVVFVTHDL 204 SGGM++++++A F+ +++++DEP + +D +R + + LL+ +++ TH + Sbjct: 1034 SGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSRRGIWELLLKYRQGR--TIILSTHHM 1091 Query: 205 EEAIALADRVFVLT 218 +EA L DR+ +++ Sbjct: 1092 DEADVLGDRIAIIS 1105 Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 48/180 (26%), Positives = 86/180 (47%), Gaps = 5/180 (2%) Query: 42 GEFIAIVGPTGCGKSTTLNLITGLLKPVSGEVRVMGRPV----DGIDPRIGFVFQADAVF 97 GE ++G G GKS+T ++TG G+ + + + +G+ Q DA+ Sbjct: 1939 GECFGLLGVNGAGKSSTFKMLTGDTTVTRGDAFLNKNSILSNIHEVHQNMGYCPQFDAIT 1998 Query: 98 PWRNVIDNVAAGPLFRGRSKDVAYTQAEEWIRKVGLDKFTKHYPHQLSGGMRKRVALAQT 157 ++V L RG + E IRK+GL K+ + Y SGG +++++ A Sbjct: 1999 ELLTGREHVEFFALLRGVPEKEVGKVGEWAIRKLGLVKYGEKYAGNYSGGNKRKLSTAMA 2058 Query: 158 FINQPEILLMDEPFSALDMQTRTLMQDELLQLWSANKGSVVFVTHDLEEAIALADRVFVL 217 I P ++ +DEP + +D + R + + L + + SVV +H +EE AL R+ ++ Sbjct: 2059 LIGGPPVVFLDEPTTGMDPKARRFLWNCALSVVKEGR-SVVLTSHSMEECEALCTRMAIM 2117 >ENSP00000321973 pep:known chromosome:NCBI36:7:48208389:48657637:1 gene:ENSG00000179869 transcript:ENST00000319379 Length = 5005 Score = 85.5 bits (210), Expect = 5e-17, Method: Composition-based stats. Identities = 59/216 (27%), Positives = 110/216 (50%), Gaps = 12/216 (5%) Query: 8 STPAIEFRNVSCRFISPEGKATVALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLK 67 S P + +V+ + EG V ++D S++ R + A++G G GK+T ++++TGL Sbjct: 3785 SAPGVTLVSVTKEY---EGHKAV-VQDLSLTFYRDQITALLGTNGAGKTTIISMLTGLHP 3840 Query: 68 PVSGEVRVMGRPVDGIDPRI----GFVFQADAVFPWRNVIDNVAAGPLFRGR--SKDVAY 121 P SG + + G+ + R+ G Q D + V +++ + +K + Sbjct: 3841 PTSGTIIINGKNLQTDLSRVRMELGVCPQQDILLDNLTVREHLLLFASIKAPQWTKKELH 3900 Query: 122 TQAEEWIRKVGLDKFTKHYPHQLSGGMRKRVALAQTFINQPEILLMDEPFSALDMQTRTL 181 Q + ++ V L + LSGG++++++L F+ +++DEP S +D +R Sbjct: 3901 QQVNQTLQDVDLTQHQHKQTRALSGGLKRKLSLGIAFMGMSRTVVLDEPTSGVDPCSRHS 3960 Query: 182 MQDELLQLWSANKGSVVFVTHDLEEAIALADRVFVL 217 + D LL+ +++F TH L+EA AL+DRV VL Sbjct: 3961 LWDILLKYREGR--TIIFTTHHLDEAEALSDRVAVL 3994 Score = 73.2 bits (178), Expect = 2e-13, Method: Composition-based stats. Identities = 52/199 (26%), Positives = 98/199 (49%), Gaps = 15/199 (7%) Query: 30 VALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVSGEVRV---MGRPVD----- 81 +A++D S+ + +GE ++G G GKSTT ++ G + SG + MG VD Sbjct: 4682 IAVQDISLGIPKGECFGLLGVNGAGKSTTFKMLNGEVSLTSGHAIIRTPMGDAVDLSSAG 4741 Query: 82 --GIDPRIGFVFQADAVFPWRNVIDNVAAGPLFRGRSKDVAYTQAEEWIRKVGLDKFTKH 139 G+ IG+ Q DA+ +++ RG + A + IR++ L+ Sbjct: 4742 TAGV--LIGYCPQQDALDELLTGWEHLYYYCSLRGIPRQCIPEVAGDLIRRLHLEAHADK 4799 Query: 140 YPHQLSGGMRKRVALAQTFINQPEILLMDEPFSALDMQTRTLMQDELLQLWSANKG-SVV 198 SGG +++++ A + +P+ILL+DEP S +D ++ + +++ +G + V Sbjct: 4800 PVATYSGGTKRKLSTALALVGKPDILLLDEPSSGMDPCSKRYLWQTIMK--EVREGCAAV 4857 Query: 199 FVTHDLEEAIALADRVFVL 217 +H +EE AL R+ ++ Sbjct: 4858 LTSHSMEECEALCTRLAIM 4876 >ENSP00000265723 pep:known-ccds chromosome:NCBI36:7:86869302:86942991:-1 gene:ENSG00000005471 transcript:ENST00000265723 CCDS5606.1 Length = 1286 Score = 85.1 bits (209), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 60/188 (31%), Positives = 92/188 (48%), Gaps = 19/188 (10%) Query: 12 IEFRNVSCRFISPEGKATVALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVSG 71 +EF +V F P L+ ++ V G+ +A+VG +GCGKSTT+ LI L P G Sbjct: 394 LEFNDV--HFSYPSRANVKILKGLNLKVQSGQTVALVGSSGCGKSTTVQLIQRLYDPDEG 451 Query: 72 EVRVMGRPVDGIDPR-----IGFVFQADAVFPWRNVIDNVAAGPLFRGR------SKDVA 120 + + G+ + + IG V Q +F + +N+ G RG K V Sbjct: 452 TINIDGQDIRNFNVNYLREIIGVVSQEPVLFS-TTIAENICYG---RGNVTMDEIKKAVK 507 Query: 121 YTQAEEWIRKV--GLDKFTKHYPHQLSGGMRKRVALAQTFINQPEILLMDEPFSALDMQT 178 A E+I K+ D QLSGG ++R+A+A+ + P+ILL+DE SALD ++ Sbjct: 508 EANAYEFIMKLPQKFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTES 567 Query: 179 RTLMQDEL 186 +Q L Sbjct: 568 EAEVQAAL 575 Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 95/178 (53%), Gaps = 28/178 (15%) Query: 32 LRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVSGEVRV-MG-RPVDGIDPR--- 86 L+ S+ V +G+ +A+VG +GCGKST + L+ P++G V V G + +DG + + Sbjct: 1052 LQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPLAGTVFVDFGFQLLDGQEAKKLN 1111 Query: 87 -------IGFVFQADAVFPWRNVIDNVAAGPLFRGRSKDVAYTQAEEWIRKVGLDKFTKH 139 +G V Q +F ++ +N+A G R S+D + A + + F + Sbjct: 1112 VQWLRAQLGIVSQEPILFDC-SIAENIAYGDNSRVVSQDEIVSAA----KAANIHPFIET 1166 Query: 140 YPH-----------QLSGGMRKRVALAQTFINQPEILLMDEPFSALDMQTRTLMQDEL 186 PH QLSGG ++R+A+A+ I QP+ILL+DE SALD ++ ++Q+ L Sbjct: 1167 LPHKYETRVGDKGTQLSGGQKQRIAIARALIRQPQILLLDEATSALDTESEKVVQEAL 1224 >ENSP00000295750 pep:known chromosome:NCBI36:2:219782738:219791639:-1 gene:ENSG00000115657 transcript:ENST00000295750 Length = 764 Score = 85.1 bits (209), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 110/222 (49%), Gaps = 30/222 (13%) Query: 12 IEFRNVSCRFISPEGKATVALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVSG 71 IEF NV F +G+ T L+D S +V G+ +A+VGP+G GKST L L+ SG Sbjct: 512 IEFENV--HFSYADGRET--LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSG 567 Query: 72 EVRVMGRPVDGID-----PRIGFVFQADAVFPWRNVIDNVAAGPLFRGRSKDVAYTQAEE 126 +R+ G+ + + IG V Q +F + DN+ G + G + A QA Sbjct: 568 CIRIDGQDISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRVTAGNDEVEAAAQA-- 624 Query: 127 WIRKVGLDKFTKHYPH-----------QLSGGMRKRVALAQTFINQPEILLMDEPFSALD 175 G+ +P +LSGG ++RVA+A+T + P I+L+DE SALD Sbjct: 625 ----AGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALD 680 Query: 176 MQTRTLMQDELLQLWSANKGSVVFVTHDLEEAIALADRVFVL 217 +Q L ++ AN+ ++V V H L + AD++ V+ Sbjct: 681 TSNERAIQASLAKV-CANRTTIV-VAHRLSTVVN-ADQILVI 719 >ENSP00000363166 pep:known chromosome:NCBI36:2:219782738:219791797:-1 gene:ENSG00000115657 transcript:ENST00000374054 Length = 894 Score = 85.1 bits (209), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 110/222 (49%), Gaps = 30/222 (13%) Query: 12 IEFRNVSCRFISPEGKATVALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVSG 71 IEF NV F +G+ T L+D S +V G+ +A+VGP+G GKST L L+ SG Sbjct: 642 IEFENV--HFSYADGRET--LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSG 697 Query: 72 EVRVMGRPVDGID-----PRIGFVFQADAVFPWRNVIDNVAAGPLFRGRSKDVAYTQAEE 126 +R+ G+ + + IG V Q +F + DN+ G + G + A QA Sbjct: 698 CIRIDGQDISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRVTAGNDEVEAAAQA-- 754 Query: 127 WIRKVGLDKFTKHYPH-----------QLSGGMRKRVALAQTFINQPEILLMDEPFSALD 175 G+ +P +LSGG ++RVA+A+T + P I+L+DE SALD Sbjct: 755 ----AGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALD 810 Query: 176 MQTRTLMQDELLQLWSANKGSVVFVTHDLEEAIALADRVFVL 217 +Q L ++ AN+ ++V V H L + AD++ V+ Sbjct: 811 TSNERAIQASLAKV-CANRTTIV-VAHRLSTVVN-ADQILVI 849 >ENSP00000265316 pep:known-ccds chromosome:NCBI36:2:219782738:219791917:-1 gene:ENSG00000115657 transcript:ENST00000265316 CCDS2436.1 Length = 842 Score = 85.1 bits (209), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 110/222 (49%), Gaps = 30/222 (13%) Query: 12 IEFRNVSCRFISPEGKATVALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVSG 71 IEF NV F +G+ T L+D S +V G+ +A+VGP+G GKST L L+ SG Sbjct: 590 IEFENV--HFSYADGRET--LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSG 645 Query: 72 EVRVMGRPVDGID-----PRIGFVFQADAVFPWRNVIDNVAAGPLFRGRSKDVAYTQAEE 126 +R+ G+ + + IG V Q +F + DN+ G + G + A QA Sbjct: 646 CIRIDGQDISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRVTAGNDEVEAAAQA-- 702 Query: 127 WIRKVGLDKFTKHYPH-----------QLSGGMRKRVALAQTFINQPEILLMDEPFSALD 175 G+ +P +LSGG ++RVA+A+T + P I+L+DE SALD Sbjct: 703 ----AGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALD 758 Query: 176 MQTRTLMQDELLQLWSANKGSVVFVTHDLEEAIALADRVFVL 217 +Q L ++ AN+ ++V V H L + AD++ V+ Sbjct: 759 TSNERAIQASLAKV-CANRTTIV-VAHRLSTVVN-ADQILVI 797 >ENSP00000284425 pep:known-ccds chromosome:NCBI36:17:64586442:64649610:-1 gene:ENSG00000154262 transcript:ENST00000284425 CCDS11683.1 Length = 1617 Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 48/193 (24%), Positives = 95/193 (49%), Gaps = 2/193 (1%) Query: 27 KATVALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVSGEVRVMGRPVDGIDPR 86 K +A R+ S V GE + ++GP G GKS+++ +I+G+ KP +GEV + G + Sbjct: 1298 KKKIAARNISFCVQEGEILGLLGPNGAGKSSSIRMISGITKPTAGEVELKG--CSSVLGH 1355 Query: 87 IGFVFQADAVFPWRNVIDNVAAGPLFRGRSKDVAYTQAEEWIRKVGLDKFTKHYPHQLSG 146 +G+ Q + ++P + +++ +G K A + L + +L+ Sbjct: 1356 LGYCPQENVLWPMLTLREHLEVYAAVKGLRKADARLAIARLVSAFKLHEQLNVPVQKLTA 1415 Query: 147 GMRKRVALAQTFINQPEILLMDEPFSALDMQTRTLMQDELLQLWSANKGSVVFVTHDLEE 206 G+ +++ + + +LL+DEP + +D + M + + + V+ TH+L E Sbjct: 1416 GITRKLCFVLSLLGNSPVLLLDEPSTGIDPTGQQQMWQAIQAVVKNTERGVLLTTHNLAE 1475 Query: 207 AIALADRVFVLTA 219 A AL DRV ++ + Sbjct: 1476 AEALCDRVAIMVS 1488 Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 63/227 (27%), Positives = 106/227 (46%), Gaps = 35/227 (15%) Query: 11 AIEFRNVSCRFISPEGKATVALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVS 70 AI RNV + GK AL+ + G+ AI+G +G GKS+ LN++ GL P Sbjct: 477 AIRIRNVKKEYKGKSGKVE-ALKGLLFDIYEGQITAILGHSGAGKSSLLNILNGLSVPTE 535 Query: 71 GEVRVMGR------PVDGIDPRIGFVFQADAVFPWRNVIDNVAAGPLFRGRSKDVAYTQA 124 G V + + ++ I G Q + F V +N++ LF + K + + Sbjct: 536 GSVTIYNKNLSEMQDLEEIRKITGVCPQFNVQFDILTVKENLS---LF-AKIKGIHLKEV 591 Query: 125 EEWIRKVGL--------DKFTKHYPHQLSGGMRKRVALAQTFINQPEILLMDEPFSALDM 176 E+ ++++ L D KH LS G ++++ T + P+ILL+DEP + LD Sbjct: 592 EQEVQRILLELDMQNIQDNLAKH----LSEGQKRKLTFGITILGDPQILLLDEPTTGLDP 647 Query: 177 QTRTLMQDELLQLWSANK-----GSVVFVTHDLEEAIALADRVFVLT 218 +R Q+WS + ++F T ++EA LADR +++ Sbjct: 648 FSRD-------QVWSLLRERRADHVILFSTQSMDEADILADRKVIMS 687 >ENSP00000353867 pep:known chromosome:NCBI36:7:150356443:150380773:1 gene:ENSG00000197150 transcript:ENST00000360651 Length = 704 Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 63/207 (30%), Positives = 108/207 (52%), Gaps = 20/207 (9%) Query: 11 AIEFRNVSCRFISPEGKATVALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVS 70 ++ F+NV F P L+DF++++ G+ +A+VG +G GK+T +L+ P + Sbjct: 440 SVTFQNVC--FSYPCRPGFEVLKDFTLTLPPGKIVALVGQSGGGKTTVASLLERFYDPTA 497 Query: 71 GEVRVMGRPVDGIDPR------IGFVFQADAVFPWRNVIDNVAAGPLFRGRSKDVAYTQA 124 G V + GR + +DP +GF+ Q +F +++N+ G L S + YT A Sbjct: 498 GVVMLDGRDLRTLDPSWLRGQVVGFISQEPVLF-GTTIMENIRFGKL--EASDEEVYTAA 554 Query: 125 EEWIRKVGLDKFTKHY-------PHQLSGGMRKRVALAQTFINQPEILLMDEPFSALDMQ 177 E + F + Y LSGG ++R+A+A+ I QP +L++DE SALD + Sbjct: 555 REANAHEFITSFPEGYNTVVGERGTTLSGGQKQRLAIARALIKQPTVLILDEATSALDAE 614 Query: 178 TRTLMQDELLQLWSANKGSVVFVTHDL 204 + ++Q E L SA + +V+ + H L Sbjct: 615 SERVVQ-EALDRASAGR-TVLVIAHRL 639 >ENSP00000269081 pep:known-ccds chromosome:NCBI36:17:64655772:64752582:-1 gene:ENSG00000154263 transcript:ENST00000269081 CCDS11684.1 Length = 1543 Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 52/200 (26%), Positives = 103/200 (51%), Gaps = 8/200 (4%) Query: 27 KATVALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVSGEVRVMG------RPV 80 K +A+R+ S V +GE + ++G G GKST++ +ITG KP +G V + G + Sbjct: 1217 KKKIAIRNVSFCVKKGEVLGLLGHNGAGKSTSIKMITGCTKPTAGVVVLQGSRASVRQQH 1276 Query: 81 DGIDPRIGFVFQADAVFPWRNVIDNVAAGPLFRGRSKDVAYTQAEEWIRKVGLDKFTKHY 140 D +G+ Q ++++P + +++ +G K+ A + + L + K Sbjct: 1277 DNSLKFLGYCPQENSLWPKLTMKEHLELYAAVKGLGKEDAALSISRLVEALKLQEQLKAP 1336 Query: 141 PHQLSGGMRKRVALAQTFINQPEILLMDEPFSALDMQTRTLMQDELLQLWSANKG-SVVF 199 LS G+++++ + + P ++L+DEPF+ +D + + M ++LQ NK + Sbjct: 1337 VKTLSEGIKRKLCFVLSILGNPSVVLLDEPFTGMDPEGQQQMW-QILQATVKNKERGTLL 1395 Query: 200 VTHDLEEAIALADRVFVLTA 219 TH + EA A+ DR+ ++ + Sbjct: 1396 TTHYMSEAEAVCDRMAMMVS 1415 Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 59/219 (26%), Positives = 98/219 (44%), Gaps = 19/219 (8%) Query: 11 AIEFRNVSCRFISPEGKATVALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVS 70 AI RNV + GK AL+ + G+ AI+G G GKST LN+++GL Sbjct: 390 AIRIRNVIKEYNGKTGKVE-ALQGIFFDIYEGQITAILGHNGAGKSTLLNILSGLSVSTE 448 Query: 71 GEVRVMGRPV------DGIDPRIGFVFQADAVFPWRNVIDNVAAGPLFRGRSKDVAYTQA 124 G + + + I IGF Q + F + V +N+ +G + Sbjct: 449 GSATIYNTQLSEITDMEEIRKNIGFCPQFNFQFDFLTVRENLRVFAKIKGIQPKEVEQEV 508 Query: 125 EEWIRKVGLDKFTKHYPHQLSGGMRKRVALAQTFINQPEILLMDEPFSALDMQTRTLMQD 184 + I ++ + +LSGG ++++ L + P++LL+DEP + LD +R Sbjct: 509 KRIIMELDMQSIQDIIAKKLSGGQKRKLTLGIAILGDPQVLLLDEPTAGLDPFSRH---- 564 Query: 185 ELLQLWSANKGS-----VVFVTHDLEEAIALADRVFVLT 218 ++WS K ++F T ++EA LADR L+ Sbjct: 565 ---RVWSLLKEHKVDRLILFSTQFMDEADILADRKVFLS 600 >ENSP00000351717 pep:known-ccds chromosome:NCBI36:7:150356463:150373582:1 gene:ENSG00000197150 transcript:ENST00000358849 CCDS5913.1 Length = 718 Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 63/208 (30%), Positives = 108/208 (51%), Gaps = 20/208 (9%) Query: 11 AIEFRNVSCRFISPEGKATVALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVS 70 ++ F+NV F P L+DF++++ G+ +A+VG +G GK+T +L+ P + Sbjct: 454 SVTFQNVC--FSYPCRPGFEVLKDFTLTLPPGKIVALVGQSGGGKTTVASLLERFYDPTA 511 Query: 71 GEVRVMGRPVDGIDPR------IGFVFQADAVFPWRNVIDNVAAGPLFRGRSKDVAYTQA 124 G V + GR + +DP +GF+ Q +F +++N+ G L S + YT A Sbjct: 512 GVVMLDGRDLRTLDPSWLRGQVVGFISQEPVLF-GTTIMENIRFGKL--EASDEEVYTAA 568 Query: 125 EEWIRKVGLDKFTKHY-------PHQLSGGMRKRVALAQTFINQPEILLMDEPFSALDMQ 177 E + F + Y LSGG ++R+A+A+ I QP +L++DE SALD + Sbjct: 569 REANAHEFITSFPEGYNTVVGERGTTLSGGQKQRLAIARALIKQPTVLILDEATSALDAE 628 Query: 178 TRTLMQDELLQLWSANKGSVVFVTHDLE 205 + ++Q E L SA + +V+ + H L Sbjct: 629 SERVVQ-EALDRASAGR-TVLVIAHRLS 654 >ENSP00000297504 pep:known chromosome:NCBI36:7:150356470:150373582:1 gene:ENSG00000197150 transcript:ENST00000297504 Length = 735 Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 63/211 (29%), Positives = 109/211 (51%), Gaps = 28/211 (13%) Query: 11 AIEFRNVSCRFISPEGKATVALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVS 70 ++ F+NV F P L+DF++++ G+ +A+VG +G GK+T +L+ P + Sbjct: 471 SVTFQNVC--FSYPCRPGFEVLKDFTLTLPPGKIVALVGQSGGGKTTVASLLERFYDPTA 528 Query: 71 GEVRVMGRPVDGIDPR------IGFVFQADAVFPWRNVIDNVAAGPLFRGRSKDVAYTQA 124 G V + GR + +DP +GF+ Q +F +++N+ G L S + YT A Sbjct: 529 GVVMLDGRDLRTLDPSWLRGQVVGFISQEPVLFG-TTIMENIRFGKL--EASDEEVYTAA 585 Query: 125 EEWIRKVGLDKFTKHYPH-----------QLSGGMRKRVALAQTFINQPEILLMDEPFSA 173 R+ +F +P LSGG ++R+A+A+ I QP +L++DE SA Sbjct: 586 ----REANAHEFITSFPEGYNTVVGERGTTLSGGQKQRLAIARALIKQPTVLILDEATSA 641 Query: 174 LDMQTRTLMQDELLQLWSANKGSVVFVTHDL 204 LD ++ ++Q E L SA + +V+ + H L Sbjct: 642 LDAESERVVQ-EALDRASAGR-TVLVIAHRL 670 >ENSP00000342216 pep:known-ccds chromosome:NCBI36:17:64482580:64568731:-1 gene:ENSG00000154258 transcript:ENST00000340001 CCDS11681.1 Length = 1624 Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 53/195 (27%), Positives = 97/195 (49%), Gaps = 4/195 (2%) Query: 27 KATVALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVSGEVRVMGRPVDGIDPR 86 K +A R+ S V +GE I ++G G GKSTT+ +ITG KP +G+V + G G +P Sbjct: 1304 KKKIATRNVSFCVKKGEVIGLLGHNGAGKSTTIKMITGDTKPTAGQVILKGS--GGGEPL 1361 Query: 87 --IGFVFQADAVFPWRNVIDNVAAGPLFRGRSKDVAYTQAEEWIRKVGLDKFTKHYPHQL 144 +G+ Q +A++P V ++ +G K A + + L K L Sbjct: 1362 GFLGYCPQENALWPNLTVRQHLEVYAAVKGLRKGDAMIAITRLVDALKLQDQLKAPVKTL 1421 Query: 145 SGGMRKRVALAQTFINQPEILLMDEPFSALDMQTRTLMQDELLQLWSANKGSVVFVTHDL 204 S G+++++ + + P ++L+DEP + +D + + M + + + + TH + Sbjct: 1422 SEGIKRKLCFVLSILGNPSVVLLDEPSTGMDPEGQQQMWQVIRATFRNTERGALLTTHYM 1481 Query: 205 EEAIALADRVFVLTA 219 EA A+ DRV ++ + Sbjct: 1482 AEAEAVCDRVAIMVS 1496 Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/232 (24%), Positives = 108/232 (46%), Gaps = 16/232 (6%) Query: 2 NQAVSPSTP------AIEFRNVSCRFISPEGKATVALRDFSMSVARGEFIAIVGPTGCGK 55 N P +P AI +N+ + + + + AL+ + G+ A++G +G GK Sbjct: 465 NDCFEPVSPEFCGKEAIRIKNLKKEY-AGKCERVEALKGVVFDIYEGQITALLGHSGAGK 523 Query: 56 STTLNLITGLLKPVSGEVRVMGRP------VDGIDPRIGFVFQADAVFPWRNVIDNVAAG 109 +T LN+++GL P SG V V ++ I GF Q++ F + V +N+ Sbjct: 524 TTLLNILSGLSVPTSGSVTVYNHTLSRMADIENISKFTGFCPQSNVQFGFLTVKENLRLF 583 Query: 110 PLFRGRSKDVAYTQAEEWIRKVGLDKFTKHYPHQLSGGMRKRVALAQTFINQPEILLMDE 169 +G + + ++++ ++ LSGG +++ + P++LL+DE Sbjct: 584 AKIKGILPHEVEKEVQRVVQELEMENIQDILAQNLSGGQNRKLTFGIAILGDPQVLLLDE 643 Query: 170 PFSALDMQTRTLMQDELLQLWSANKGSVVFVTHDLEEAIALADR-VFVLTAR 220 P + LD +R + + L + + ++F T ++EA LADR VF+ + Sbjct: 644 PTAGLDPLSRHRIWNLLKE--GKSDRVILFSTQFIDEADILADRKVFISNGK 693 >ENSP00000280559 pep:known-ccds chromosome:NCBI36:12:121979500:122032149:-1 gene:ENSG00000150967 transcript:ENST00000346530 CCDS9240.1 Length = 723 Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 60/204 (29%), Positives = 103/204 (50%), Gaps = 15/204 (7%) Query: 12 IEFRNVSCRFISPEGKATVALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVSG 71 ++F NV+ F T L++ S S++ G+ A+VGP+G GKS+ +N++ G Sbjct: 461 VDFENVT--FTYRTRPHTQVLQNVSFSLSPGKVTALVGPSGSGKSSCVNILENFYPLEGG 518 Query: 72 EVRVMGRPVDGIDPR-----IGFVFQADAVFPWRNVIDNVAAG-PL--FRGRSKDVAYTQ 123 V + G+P+ D + I V Q +F R++ DN++ G P F + Sbjct: 519 RVLLDGKPISAYDHKYLHRVISLVSQEPVLFA-RSITDNISYGLPTVPFEMVVEAAQKAN 577 Query: 124 AEEWIRKV--GLDKFTKHYPHQLSGGMRKRVALAQTFINQPEILLMDEPFSALDMQTRTL 181 A +I ++ G T QLSGG ++RVA+A+ + P +L++DE SALD ++ L Sbjct: 578 AHGFIMELQDGYSTETGEKGAQLSGGQKQRVAMARALVRNPPVLILDEATSALDAESEYL 637 Query: 182 MQDELLQLWSANKGSVVFVTHDLE 205 +Q + + K +V+ + H L Sbjct: 638 IQQAIHG--NLQKHTVLIIAHRLS 659 >ENSP00000348627 pep:known chromosome:NCBI36:17:64375028:64463128:-1 gene:ENSG00000141338 transcript:ENST00000356282 Length = 1591 Score = 81.3 bits (199), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 49/193 (25%), Positives = 94/193 (48%) Query: 27 KATVALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVSGEVRVMGRPVDGIDPR 86 K +A R+ S V +GE + ++G G GKST++ +ITG KP +G+V + G Sbjct: 1271 KNKIATRNVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSGGGDALEF 1330 Query: 87 IGFVFQADAVFPWRNVIDNVAAGPLFRGRSKDVAYTQAEEWIRKVGLDKFTKHYPHQLSG 146 +G+ Q +A++P V ++ +G K A + + L K LS Sbjct: 1331 LGYCPQENALWPNLTVRQHLEVYAAVKGLRKGDAEVAITRLVDALKLQDQLKSPVKTLSE 1390 Query: 147 GMRKRVALAQTFINQPEILLMDEPFSALDMQTRTLMQDELLQLWSANKGSVVFVTHDLEE 206 G+++++ + + P ++L+DEP + +D + + M + + + + TH + E Sbjct: 1391 GIKRKLCFVLSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATFRNTERGALLTTHYMAE 1450 Query: 207 AIALADRVFVLTA 219 A A+ DRV ++ + Sbjct: 1451 AEAVCDRVAIMVS 1463 Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 55/219 (25%), Positives = 86/219 (39%), Gaps = 59/219 (26%) Query: 11 AIEFRNVSCRFISPEGKATVALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVS 70 AI RNV+ + K AL+D + G+ AI+G +G GKST LN+++GL P Sbjct: 489 AIRIRNVTKEYKGKPDKIE-ALKDLVFDIYEGQITAILGHSGAGKSTLLNILSGLSVPTK 547 Query: 71 GEVRVMGRP------VDGIDPRIGFVFQADAVFPWRNVIDNVAAGPLFRGRSKDVAYTQA 124 G V + ++ + G Q++ F + V +N+ +G Sbjct: 548 GSVTIYNNKLSEMADLENLSKLTGVCPQSNVQFDFLTVRENLRLFAKIKG---------- 597 Query: 125 EEWIRKVGLDKFTKHYPHQLSGGMRKRVALAQTFINQPEILLMDEPFSALDMQTRTLMQD 184 I +DK EI L+DEP + LD +R Sbjct: 598 ---ILPQEVDK---------------------------EIFLLDEPTAGLDPFSRH---- 623 Query: 185 ELLQLWSANKGS-----VVFVTHDLEEAIALADRVFVLT 218 Q+W+ K ++F T ++EA LADR L+ Sbjct: 624 ---QVWNLLKERKTDRVILFSTQFMDEADILADRKVFLS 659 >ENSP00000346206 pep:known-ccds chromosome:NCBI36:6:32920804:32929729:-1 gene:ENSG00000168394 transcript:ENST00000354258 CCDS4758.1 Length = 808 Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 63/217 (29%), Positives = 106/217 (48%), Gaps = 15/217 (6%) Query: 12 IEFRNVSCRFISPEGKATVALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVSG 71 ++F++VS F P + L+ + ++ GE A+VGP G GKST L+ L +P G Sbjct: 563 VQFQDVS--FAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGG 620 Query: 72 EVRVMGRPVDGIDPR-----IGFVFQADAVFPWRNVIDNVAAG----PLFRGRSKDVAYT 122 ++ + G+P+ + R + V Q VF R++ +N+A G P + + Sbjct: 621 QLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLTQKPTMEEITAAAVKS 679 Query: 123 QAEEWIRKV--GLDKFTKHYPHQLSGGMRKRVALAQTFINQPEILLMDEPFSALDMQTRT 180 A +I + G D QLSGG R+ VALA+ I +P +L++D+ SALD ++ Sbjct: 680 GAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQL 739 Query: 181 LMQDELLQLWSANKGSVVFVTHDLEEAIALADRVFVL 217 ++ L + SV+ +T L + AD + L Sbjct: 740 QVEQLLYESPERYSRSVLLITQHL-SLVEQADHILFL 775 >ENSP00000372722 pep:known chromosome:NCBI36:c6_QBL:32884550:32893318:-1 gene:ENSG00000206297 transcript:ENST00000383235 Length = 808 Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 63/217 (29%), Positives = 106/217 (48%), Gaps = 15/217 (6%) Query: 12 IEFRNVSCRFISPEGKATVALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVSG 71 ++F++VS F P + L+ + ++ GE A+VGP G GKST L+ L +P G Sbjct: 563 VQFQDVS--FAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGG 620 Query: 72 EVRVMGRPVDGIDPR-----IGFVFQADAVFPWRNVIDNVAAG----PLFRGRSKDVAYT 122 ++ + G+P+ + R + V Q VF R++ +N+A G P + + Sbjct: 621 QLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLTQKPTMEEITAAAVKS 679 Query: 123 QAEEWIRKV--GLDKFTKHYPHQLSGGMRKRVALAQTFINQPEILLMDEPFSALDMQTRT 180 A +I + G D QLSGG R+ VALA+ I +P +L++D+ SALD ++ Sbjct: 680 GAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQL 739 Query: 181 LMQDELLQLWSANKGSVVFVTHDLEEAIALADRVFVL 217 ++ L + SV+ +T L + AD + L Sbjct: 740 QVEQLLYESPERYSRSVLLITQHL-SLVEQADHILFL 775 >ENSP00000372596 pep:known chromosome:NCBI36:c6_COX:32882385:32891153:-1 gene:ENSG00000206233 transcript:ENST00000383115 Length = 808 Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 63/217 (29%), Positives = 106/217 (48%), Gaps = 15/217 (6%) Query: 12 IEFRNVSCRFISPEGKATVALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVSG 71 ++F++VS F P + L+ + ++ GE A+VGP G GKST L+ L +P G Sbjct: 563 VQFQDVS--FAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGG 620 Query: 72 EVRVMGRPVDGIDPR-----IGFVFQADAVFPWRNVIDNVAAG----PLFRGRSKDVAYT 122 ++ + G+P+ + R + V Q VF R++ +N+A G P + + Sbjct: 621 QLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLTQKPTMEEITAAAVKS 679 Query: 123 QAEEWIRKV--GLDKFTKHYPHQLSGGMRKRVALAQTFINQPEILLMDEPFSALDMQTRT 180 A +I + G D QLSGG R+ VALA+ I +P +L++D+ SALD ++ Sbjct: 680 GAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQL 739 Query: 181 LMQDELLQLWSANKGSVVFVTHDLEEAIALADRVFVL 217 ++ L + SV+ +T L + AD + L Sbjct: 740 QVEQLLYESPERYSRSVLLITQHL-SLVEQADHILFL 775 >ENSP00000269080 pep:known-ccds chromosome:NCBI36:17:64375028:64463128:-1 gene:ENSG00000141338 transcript:ENST00000269080 CCDS11680.1 Length = 1581 Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 49/193 (25%), Positives = 94/193 (48%) Query: 27 KATVALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVSGEVRVMGRPVDGIDPR 86 K +A R+ S V +GE + ++G G GKST++ +ITG KP +G+V + G Sbjct: 1261 KNKIATRNVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSGGGDALEF 1320 Query: 87 IGFVFQADAVFPWRNVIDNVAAGPLFRGRSKDVAYTQAEEWIRKVGLDKFTKHYPHQLSG 146 +G+ Q +A++P V ++ +G K A + + L K LS Sbjct: 1321 LGYCPQENALWPNLTVRQHLEVYAAVKGLRKGDAEVAITRLVDALKLQDQLKSPVKTLSE 1380 Query: 147 GMRKRVALAQTFINQPEILLMDEPFSALDMQTRTLMQDELLQLWSANKGSVVFVTHDLEE 206 G+++++ + + P ++L+DEP + +D + + M + + + + TH + E Sbjct: 1381 GIKRKLCFVLSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATFRNTERGALLTTHYMAE 1440 Query: 207 AIALADRVFVLTA 219 A A+ DRV ++ + Sbjct: 1441 AEAVCDRVAIMVS 1453 Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 55/219 (25%), Positives = 86/219 (39%), Gaps = 59/219 (26%) Query: 11 AIEFRNVSCRFISPEGKATVALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVS 70 AI RNV+ + K AL+D + G+ AI+G +G GKST LN+++GL P Sbjct: 479 AIRIRNVTKEYKGKPDKIE-ALKDLVFDIYEGQITAILGHSGAGKSTLLNILSGLSVPTK 537 Query: 71 GEVRVMGRP------VDGIDPRIGFVFQADAVFPWRNVIDNVAAGPLFRGRSKDVAYTQA 124 G V + ++ + G Q++ F + V +N+ +G Sbjct: 538 GSVTIYNNKLSEMADLENLSKLTGVCPQSNVQFDFLTVRENLRLFAKIKG---------- 587 Query: 125 EEWIRKVGLDKFTKHYPHQLSGGMRKRVALAQTFINQPEILLMDEPFSALDMQTRTLMQD 184 I +DK EI L+DEP + LD +R Sbjct: 588 ---ILPQEVDK---------------------------EIFLLDEPTAGLDPFSRH---- 613 Query: 185 ELLQLWSANKGS-----VVFVTHDLEEAIALADRVFVLT 218 Q+W+ K ++F T ++EA LADR L+ Sbjct: 614 ---QVWNLLKERKTDRVILFSTQFMDEADILADRKVFLS 649 >ENSP00000280560 pep:known-ccds chromosome:NCBI36:12:121979500:122032149:-1 gene:ENSG00000150967 transcript:ENST00000280560 CCDS9241.1 Length = 766 Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 60/204 (29%), Positives = 103/204 (50%), Gaps = 15/204 (7%) Query: 12 IEFRNVSCRFISPEGKATVALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVSG 71 ++F NV+ F T L++ S S++ G+ A+VGP+G GKS+ +N++ G Sbjct: 504 VDFENVT--FTYRTRPHTQVLQNVSFSLSPGKVTALVGPSGSGKSSCVNILENFYPLEGG 561 Query: 72 EVRVMGRPVDGIDPR-----IGFVFQADAVFPWRNVIDNVAAG-PL--FRGRSKDVAYTQ 123 V + G+P+ D + I V Q +F R++ DN++ G P F + Sbjct: 562 RVLLDGKPISAYDHKYLHRVISLVSQEPVLFA-RSITDNISYGLPTVPFEMVVEAAQKAN 620 Query: 124 AEEWIRKV--GLDKFTKHYPHQLSGGMRKRVALAQTFINQPEILLMDEPFSALDMQTRTL 181 A +I ++ G T QLSGG ++RVA+A+ + P +L++DE SALD ++ L Sbjct: 621 AHGFIMELQDGYSTETGEKGAQLSGGQKQRVAMARALVRNPPVLILDEATSALDAESEYL 680 Query: 182 MQDELLQLWSANKGSVVFVTHDLE 205 +Q + + K +V+ + H L Sbjct: 681 IQQAIHG--NLQKHTVLIIAHRLS 702 >ENSP00000263817 pep:known chromosome:NCBI36:2:169487694:169596079:-1 gene:ENSG00000073734 transcript:ENST00000263817 Length = 1324 Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 62/229 (27%), Positives = 104/229 (45%), Gaps = 24/229 (10%) Query: 17 VSCRFISPEGKATVALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVSGEVRVM 76 V C+F P + L S+S++ G+ +A VG +GCGKST++ L+ P G+V + Sbjct: 1084 VDCKFTYPSRPDSQVLNGLSVSISPGQTLAFVGSSGCGKSTSIQLLERFYDPDQGKVMID 1143 Query: 77 GRPVDGID-----PRIGFVFQADAVFPWRNVIDNVAAGPLFRGRSKDVAYTQAEEWIRKV 131 G ++ IG V Q +F +++DN+ G +K++ + ++ Sbjct: 1144 GHDSKKVNVQFLRSNIGIVSQEPVLFAC-SIMDNIKYGD----NTKEIPMERVIAAAKQA 1198 Query: 132 GLDKFTKHYPH-----------QLSGGMRKRVALAQTFINQPEILLMDEPFSALDMQTRT 180 L F P QLS G ++R+A+A+ + P+ILL+DE SALD ++ Sbjct: 1199 QLHDFVMSLPEKYETNVGSQGSQLSRGEKQRIAIARAIVRDPKILLLDEATSALDTESEK 1258 Query: 181 LMQDELLQLWSANKGSVVFVTHDLEEAIALADRVFVLTARPATLKRVYE 229 +Q + L A +G V I AD + V+ K +E Sbjct: 1259 TVQ---VALDKAREGRTCIVIAHRLSTIQNADIIAVMAQGVVIEKGTHE 1304 Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 71/243 (29%), Positives = 109/243 (44%), Gaps = 30/243 (12%) Query: 12 IEFRNVSCRFIS-PEGKATVALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVS 70 IEF NV+ + S PE K L D +M + GE A+VGP+G GKST L LI P Sbjct: 421 IEFHNVTFHYPSRPEVKI---LNDLNMVIKPGEMTALVGPSGAGKSTALQLIQRFYDPCE 477 Query: 71 GEVRVMGRPVDGID-----PRIGFVFQADAVFPWRNVIDNVAAGPLFRGRSKDVAYTQAE 125 G V V G + ++ +IG V Q +F + +N+ G +D Sbjct: 478 GMVTVDGHDIRSLNIQWLRDQIGIVEQEPVLFS-TTIAENIRYG------REDATMEDIV 530 Query: 126 EWIRKVGLDKFTKHYPHQLS-----------GGMRKRVALAQTFINQPEILLMDEPFSAL 174 + ++ F P Q GG ++RVA+A+ I P+ILL+D SAL Sbjct: 531 QAAKEANAYNFIMDLPQQFDTLVGEGGGQMSGGQKQRVAIARALIRNPKILLLDMATSAL 590 Query: 175 DMQTRTLMQDELLQLWSANKGSVVFVTHDLEEAIALADRVFVLTARPATLKRVYEIDLPR 234 D ++ ++Q+ L ++ + +++ V H L A AD + A + +E L R Sbjct: 591 DNESEAMVQEVLSKIQHGH--TIISVAHRLSTVRA-ADTIIGFEHGTAVERGTHEELLER 647 Query: 235 PRV 237 V Sbjct: 648 KGV 650 >ENSP00000374312 pep:known-ccds chromosome:NCBI36:2:215505603:215604896:-1 gene:ENSG00000144452 transcript:ENST00000389661 CCDS33373.1 Length = 2277 Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 52/202 (25%), Positives = 105/202 (51%), Gaps = 20/202 (9%) Query: 28 ATVALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVSGEVRVMGRPV----DGI 83 + VA+ + +++ G +++GP G GK+TT++++TGL +G + V G+ + + Sbjct: 1039 SKVAVDNLNLNFYEGHITSLLGPNGAGKTTTISMLTGLFGASAGTIFVYGKDIKTDLHTV 1098 Query: 84 DPRIGFVFQADAVFPWRNVIDNVAAGPLFRGRSKDVAYT--QAEEWIRKVGLDKFTKHYP 141 +G Q D +F + +++ L G K +T Q E +++ D + Sbjct: 1099 RKNMGVCMQHDVLFSYLTTKEHL----LLYGSIKVPHWTKKQLHEEVKRTLKDTGLYSHR 1154 Query: 142 HQ----LSGGMRKRVALAQTFINQPEILLMDEPFSALDMQTRTLMQDELLQLWSANKG-- 195 H+ LSGGM+++++++ I ++++DEP + +D +R + D + S NK Sbjct: 1155 HKRVGTLSGGMKRKLSISIALIGGSRVVILDEPSTGVDPCSRRSIWDVI----SKNKTAR 1210 Query: 196 SVVFVTHDLEEAIALADRVFVL 217 +++ TH L+EA L+DR+ L Sbjct: 1211 TIILSTHHLDEAEVLSDRIAFL 1232 Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 54/203 (26%), Positives = 96/203 (47%), Gaps = 20/203 (9%) Query: 27 KATVALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVSGEVRVMGRP-----VD 81 K +A+ + S+ + GE ++G G GK+T ++TG + P SG + + + VD Sbjct: 1950 KKIIAVNNISIGIPAGECFGLLGVNGAGKTTIFKMLTGDIIPSSGNILIRNKTGSLGHVD 2009 Query: 82 GIDPRIGFVFQADAVFPWRNVIDNVAAGPLFRG-RSKDVAYTQAEEWIRKVGLDKFTKHY 140 +G+ Q DA+ V +++ G KD+ T + +R++ L F Sbjct: 2010 SHSSLVGYCPQEDALDDLVTVEEHLYFYARVHGIPEKDIKET-VHKLLRRLHLMPFKDRA 2068 Query: 141 PHQLSGGMRKRVALAQTFINQPEILLMDEPFSALDMQTRTLMQDELLQLWS------ANK 194 S G +++++ A I +P ILL+DEP S +D +++ LW NK Sbjct: 2069 TSMCSYGTKRKLSTALALIGKPSILLLDEPSSGMDPKSKR-------HLWKIISEEVQNK 2121 Query: 195 GSVVFVTHDLEEAIALADRVFVL 217 SV+ +H +EE AL R+ ++ Sbjct: 2122 CSVILTSHSMEECEALCTRLAIM 2144 >ENSP00000374310 pep:known-ccds chromosome:NCBI36:2:215505603:215604896:-1 gene:ENSG00000144452 transcript:ENST00000389659 CCDS33373.1 Length = 2277 Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 52/202 (25%), Positives = 105/202 (51%), Gaps = 20/202 (9%) Query: 28 ATVALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVSGEVRVMGRPV----DGI 83 + VA+ + +++ G +++GP G GK+TT++++TGL +G + V G+ + + Sbjct: 1039 SKVAVDNLNLNFYEGHITSLLGPNGAGKTTTISMLTGLFGASAGTIFVYGKDIKTDLHTV 1098 Query: 84 DPRIGFVFQADAVFPWRNVIDNVAAGPLFRGRSKDVAYT--QAEEWIRKVGLDKFTKHYP 141 +G Q D +F + +++ L G K +T Q E +++ D + Sbjct: 1099 RKNMGVCMQHDVLFSYLTTKEHL----LLYGSIKVPHWTKKQLHEEVKRTLKDTGLYSHR 1154 Query: 142 HQ----LSGGMRKRVALAQTFINQPEILLMDEPFSALDMQTRTLMQDELLQLWSANKG-- 195 H+ LSGGM+++++++ I ++++DEP + +D +R + D + S NK Sbjct: 1155 HKRVGTLSGGMKRKLSISIALIGGSRVVILDEPSTGVDPCSRRSIWDVI----SKNKTAR 1210 Query: 196 SVVFVTHDLEEAIALADRVFVL 217 +++ TH L+EA L+DR+ L Sbjct: 1211 TIILSTHHLDEAEVLSDRIAFL 1232 Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 54/203 (26%), Positives = 96/203 (47%), Gaps = 20/203 (9%) Query: 27 KATVALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVSGEVRVMGRP-----VD 81 K +A+ + S+ + GE ++G G GK+T ++TG + P SG + + + VD Sbjct: 1950 KKIIAVNNISIGIPAGECFGLLGVNGAGKTTIFKMLTGDIIPSSGNILIRNKTGSLGHVD 2009 Query: 82 GIDPRIGFVFQADAVFPWRNVIDNVAAGPLFRG-RSKDVAYTQAEEWIRKVGLDKFTKHY 140 +G+ Q DA+ V +++ G KD+ T + +R++ L F Sbjct: 2010 SHSSLVGYCPQEDALDDLVTVEEHLYFYARVHGIPEKDIKET-VHKLLRRLHLMPFKDRA 2068 Query: 141 PHQLSGGMRKRVALAQTFINQPEILLMDEPFSALDMQTRTLMQDELLQLWS------ANK 194 S G +++++ A I +P ILL+DEP S +D +++ LW NK Sbjct: 2069 TSMCSYGTKRKLSTALALIGKPSILLLDEPSSGMDPKSKR-------HLWKIISEEVQNK 2121 Query: 195 GSVVFVTHDLEEAIALADRVFVL 217 SV+ +H +EE AL R+ ++ Sbjct: 2122 CSVILTSHSMEECEALCTRLAIM 2144 >ENSP00000374313 pep:known-ccds chromosome:NCBI36:2:215505603:215711176:-1 gene:ENSG00000144452 transcript:ENST00000389662 CCDS33372.1 Length = 2595 Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 52/202 (25%), Positives = 105/202 (51%), Gaps = 20/202 (9%) Query: 28 ATVALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVSGEVRVMGRPV----DGI 83 + VA+ + +++ G +++GP G GK+TT++++TGL +G + V G+ + + Sbjct: 1357 SKVAVDNLNLNFYEGHITSLLGPNGAGKTTTISMLTGLFGASAGTIFVYGKDIKTDLHTV 1416 Query: 84 DPRIGFVFQADAVFPWRNVIDNVAAGPLFRGRSKDVAYT--QAEEWIRKVGLDKFTKHYP 141 +G Q D +F + +++ L G K +T Q E +++ D + Sbjct: 1417 RKNMGVCMQHDVLFSYLTTKEHL----LLYGSIKVPHWTKKQLHEEVKRTLKDTGLYSHR 1472 Query: 142 HQ----LSGGMRKRVALAQTFINQPEILLMDEPFSALDMQTRTLMQDELLQLWSANKG-- 195 H+ LSGGM+++++++ I ++++DEP + +D +R + D + S NK Sbjct: 1473 HKRVGTLSGGMKRKLSISIALIGGSRVVILDEPSTGVDPCSRRSIWDVI----SKNKTAR 1528 Query: 196 SVVFVTHDLEEAIALADRVFVL 217 +++ TH L+EA L+DR+ L Sbjct: 1529 TIILSTHHLDEAEVLSDRIAFL 1550 Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 54/203 (26%), Positives = 96/203 (47%), Gaps = 20/203 (9%) Query: 27 KATVALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVSGEVRVMGRP-----VD 81 K +A+ + S+ + GE ++G G GK+T ++TG + P SG + + + VD Sbjct: 2268 KKIIAVNNISIGIPAGECFGLLGVNGAGKTTIFKMLTGDIIPSSGNILIRNKTGSLGHVD 2327 Query: 82 GIDPRIGFVFQADAVFPWRNVIDNVAAGPLFRG-RSKDVAYTQAEEWIRKVGLDKFTKHY 140 +G+ Q DA+ V +++ G KD+ T + +R++ L F Sbjct: 2328 SHSSLVGYCPQEDALDDLVTVEEHLYFYARVHGIPEKDIKET-VHKLLRRLHLMPFKDRA 2386 Query: 141 PHQLSGGMRKRVALAQTFINQPEILLMDEPFSALDMQTRTLMQDELLQLWS------ANK 194 S G +++++ A I +P ILL+DEP S +D +++ LW NK Sbjct: 2387 TSMCSYGTKRKLSTALALIGKPSILLLDEPSSGMDPKSKR-------HLWKIISEEVQNK 2439 Query: 195 GSVVFVTHDLEEAIALADRVFVL 217 SV+ +H +EE AL R+ ++ Sbjct: 2440 CSVILTSHSMEECEALCTRLAIM 2462 >ENSP00000374314 pep:known-ccds chromosome:NCBI36:2:215505603:215711176:-1 gene:ENSG00000144452 transcript:ENST00000389663 CCDS33372.1 Length = 2595 Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 52/202 (25%), Positives = 105/202 (51%), Gaps = 20/202 (9%) Query: 28 ATVALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVSGEVRVMGRPV----DGI 83 + VA+ + +++ G +++GP G GK+TT++++TGL +G + V G+ + + Sbjct: 1357 SKVAVDNLNLNFYEGHITSLLGPNGAGKTTTISMLTGLFGASAGTIFVYGKDIKTDLHTV 1416 Query: 84 DPRIGFVFQADAVFPWRNVIDNVAAGPLFRGRSKDVAYT--QAEEWIRKVGLDKFTKHYP 141 +G Q D +F + +++ L G K +T Q E +++ D + Sbjct: 1417 RKNMGVCMQHDVLFSYLTTKEHL----LLYGSIKVPHWTKKQLHEEVKRTLKDTGLYSHR 1472 Query: 142 HQ----LSGGMRKRVALAQTFINQPEILLMDEPFSALDMQTRTLMQDELLQLWSANKG-- 195 H+ LSGGM+++++++ I ++++DEP + +D +R + D + S NK Sbjct: 1473 HKRVGTLSGGMKRKLSISIALIGGSRVVILDEPSTGVDPCSRRSIWDVI----SKNKTAR 1528 Query: 196 SVVFVTHDLEEAIALADRVFVL 217 +++ TH L+EA L+DR+ L Sbjct: 1529 TIILSTHHLDEAEVLSDRIAFL 1550 Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 54/203 (26%), Positives = 96/203 (47%), Gaps = 20/203 (9%) Query: 27 KATVALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVSGEVRVMGRP-----VD 81 K +A+ + S+ + GE ++G G GK+T ++TG + P SG + + + VD Sbjct: 2268 KKIIAVNNISIGIPAGECFGLLGVNGAGKTTIFKMLTGDIIPSSGNILIRNKTGSLGHVD 2327 Query: 82 GIDPRIGFVFQADAVFPWRNVIDNVAAGPLFRG-RSKDVAYTQAEEWIRKVGLDKFTKHY 140 +G+ Q DA+ V +++ G KD+ T + +R++ L F Sbjct: 2328 SHSSLVGYCPQEDALDDLVTVEEHLYFYARVHGIPEKDIKET-VHKLLRRLHLMPFKDRA 2386 Query: 141 PHQLSGGMRKRVALAQTFINQPEILLMDEPFSALDMQTRTLMQDELLQLWS------ANK 194 S G +++++ A I +P ILL+DEP S +D +++ LW NK Sbjct: 2387 TSMCSYGTKRKLSTALALIGKPSILLLDEPSSGMDPKSKR-------HLWKIISEEVQNK 2439 Query: 195 GSVVFVTHDLEEAIALADRVFVL 217 SV+ +H +EE AL R+ ++ Sbjct: 2440 CSVILTSHSMEECEALCTRLAIM 2462 >ENSP00000265662 pep:known chromosome:NCBI36:9:139021507:139042561:-1 gene:ENSG00000107331 transcript:ENST00000265662 Length = 2435 Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 45/193 (23%), Positives = 98/193 (50%), Gaps = 6/193 (3%) Query: 30 VALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVSGEVRVMGRPV----DGIDP 85 +AL S+++ + ++ +G G GK+TT++++TGL P SG + G + D I Sbjct: 1005 LALNKLSLNLYENQVVSFLGHNGAGKTTTMSILTGLFPPTSGSATIYGHDIRTEMDEIRK 1064 Query: 86 RIGFVFQADAVFPWRNVIDNVAAGPLFRGRSKDVAYTQAEEWIRKVGLDKFTKHYPHQLS 145 +G Q + +F V +++ + +++ + ++ I + L LS Sbjct: 1065 NLGMCPQHNVLFDRLTVEEHLWFYSRLKSMAQEEIRREMDKMIEDLELSNKRHSLVQTLS 1124 Query: 146 GGMRKRVALAQTFINQPEILLMDEPFSALDMQTRTLMQDELLQLWSANKGSVVFVTHDLE 205 GGM++++++A F+ +++DEP + +D R + D +L+ +++ TH ++ Sbjct: 1125 GGMKRKLSVAIAFVGGSRAIILDEPTAGVDPYARRAIWDLILKYKPGR--TILLSTHHMD 1182 Query: 206 EAIALADRVFVLT 218 EA L DR+ +++ Sbjct: 1183 EADLLGDRIAIIS 1195 Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 55/212 (25%), Positives = 101/212 (47%), Gaps = 9/212 (4%) Query: 12 IEFRNVSCRFISPEGKATVALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVSG 71 ++ N++ + S + +A+ + V GE ++G G GK++T ++TG G Sbjct: 2050 VKIENLTKVYKSRKIGRILAVDRLCLGVRPGECFGLLGVNGAGKTSTFKMLTGDESTTGG 2109 Query: 72 EVRVMGRPVDG----IDPRIGFVFQADAVFPWRNVIDNVAAGPLFRGRS-KDVAYTQAEE 126 E V G V + +G+ Q DA+F +++ RG S KD A + + Sbjct: 2110 EAFVNGHSVLKELLQVQQSLGYCPQCDALFDELTAREHLQLYTRLRGISWKDEA--RVVK 2167 Query: 127 W-IRKVGLDKFTKHYPHQLSGGMRKRVALAQTFINQPEILLMDEPFSALDMQTRTLMQDE 185 W + K+ L K+ SGG +++++ A I P + +DEP + +D + R + + Sbjct: 2168 WALEKLELTKYADKPAGTYSGGNKRKLSTAIALIGYPAFIFLDEPTTGMDPKARRFLWNL 2227 Query: 186 LLQLWSANKGSVVFVTHDLEEAIALADRVFVL 217 +L L + SVV +H +EE AL R+ ++ Sbjct: 2228 ILDLIKTGR-SVVLTSHSMEECEALCTRLAIM 2258 >ENSP00000347205 pep:known chromosome:NCBI36:9:139021507:139043195:-1 gene:ENSG00000107331 transcript:ENST00000355090 Length = 2465 Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 45/193 (23%), Positives = 98/193 (50%), Gaps = 6/193 (3%) Query: 30 VALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVSGEVRVMGRPV----DGIDP 85 +AL S+++ + ++ +G G GK+TT++++TGL P SG + G + D I Sbjct: 1035 LALNKLSLNLYENQVVSFLGHNGAGKTTTMSILTGLFPPTSGSATIYGHDIRTEMDEIRK 1094 Query: 86 RIGFVFQADAVFPWRNVIDNVAAGPLFRGRSKDVAYTQAEEWIRKVGLDKFTKHYPHQLS 145 +G Q + +F V +++ + +++ + ++ I + L LS Sbjct: 1095 NLGMCPQHNVLFDRLTVEEHLWFYSRLKSMAQEEIRREMDKMIEDLELSNKRHSLVQTLS 1154 Query: 146 GGMRKRVALAQTFINQPEILLMDEPFSALDMQTRTLMQDELLQLWSANKGSVVFVTHDLE 205 GGM++++++A F+ +++DEP + +D R + D +L+ +++ TH ++ Sbjct: 1155 GGMKRKLSVAIAFVGGSRAIILDEPTAGVDPYARRAIWDLILKYKPGR--TILLSTHHMD 1212 Query: 206 EAIALADRVFVLT 218 EA L DR+ +++ Sbjct: 1213 EADLLGDRIAIIS 1225 Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 55/212 (25%), Positives = 101/212 (47%), Gaps = 9/212 (4%) Query: 12 IEFRNVSCRFISPEGKATVALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVSG 71 ++ N++ + S + +A+ + V GE ++G G GK++T ++TG G Sbjct: 2080 VKIENLTKVYKSRKIGRILAVDRLCLGVRPGECFGLLGVNGAGKTSTFKMLTGDESTTGG 2139 Query: 72 EVRVMGRPVDG----IDPRIGFVFQADAVFPWRNVIDNVAAGPLFRGRS-KDVAYTQAEE 126 E V G V + +G+ Q DA+F +++ RG S KD A + + Sbjct: 2140 EAFVNGHSVLKELLQVQQSLGYCPQCDALFDELTAREHLQLYTRLRGISWKDEA--RVVK 2197 Query: 127 W-IRKVGLDKFTKHYPHQLSGGMRKRVALAQTFINQPEILLMDEPFSALDMQTRTLMQDE 185 W + K+ L K+ SGG +++++ A I P + +DEP + +D + R + + Sbjct: 2198 WALEKLELTKYADKPAGTYSGGNKRKLSTAIALIGYPAFIFLDEPTTGMDPKARRFLWNL 2257 Query: 186 LLQLWSANKGSVVFVTHDLEEAIALADRVFVL 217 +L L + SVV +H +EE AL R+ ++ Sbjct: 2258 ILDLIKTGR-SVVLTSHSMEECEALCTRLAIM 2288 >ENSP00000272895 pep:known chromosome:NCBI36:2:215504522:215711396:-1 gene:ENSG00000144452 transcript:ENST00000272895 Length = 2597 Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 54/203 (26%), Positives = 96/203 (47%), Gaps = 20/203 (9%) Query: 27 KATVALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVSGEVRVMGRP-----VD 81 K +A+ + S+ + GE ++G G GK+T ++TG + P SG + + + VD Sbjct: 2270 KKIIAVNNISIGIPAGECFGLLGVNGAGKTTIFKMLTGDIIPSSGNILIRNKTGSLGHVD 2329 Query: 82 GIDPRIGFVFQADAVFPWRNVIDNVAAGPLFRG-RSKDVAYTQAEEWIRKVGLDKFTKHY 140 +G+ Q DA+ V +++ G KD+ T + +R++ L F Sbjct: 2330 SHSSLVGYCPQEDALDDLVTVEEHLYFYARVHGIPEKDIKET-VHKLLRRLHLMPFKDRA 2388 Query: 141 PHQLSGGMRKRVALAQTFINQPEILLMDEPFSALDMQTRTLMQDELLQLWS------ANK 194 S G +++++ A I +P ILL+DEP S +D +++ LW NK Sbjct: 2389 TSMCSYGTKRKLSTALALIGKPSILLLDEPSSGMDPKSKR-------HLWKIISEEVQNK 2441 Query: 195 GSVVFVTHDLEEAIALADRVFVL 217 SV+ +H +EE AL R+ ++ Sbjct: 2442 CSVILTSHSMEECEALCTRLAIM 2464 Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 52/202 (25%), Positives = 103/202 (50%), Gaps = 20/202 (9%) Query: 28 ATVALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVSGEVRVMGRPV----DGI 83 + VA+ + +++ G +++GP G GK+TT++++TGL +G + V G+ + + Sbjct: 1359 SKVAVDNLNLNFYEGHITSLLGPNGAGKTTTISMLTGLFGASAGTIFVYGKDIKTDLHTV 1418 Query: 84 DPRIGFVFQADAVFPWRNVIDNVAAGPLFRGRSKDVAYTQAEEWIRKVGLDKFTKHYPHQ 143 +G Q D +F + +++ L G K +T+ + K T Y H+ Sbjct: 1419 RKNMGVCMQHDVLFSYLTTKEHL----LLYGSIKVPHWTKKQLHEELHTTLKDTGLYSHR 1474 Query: 144 ------LSGGMRKRVALAQTFINQPEILLMDEPFSALDMQTRTLMQDELLQLWSANKG-- 195 LSGGM+++++++ I ++++DEP + +D +R + D + S NK Sbjct: 1475 HKRVGTLSGGMKRKLSISIALIGGSRVVILDEPSTGVDPCSRRSIWDVI----SKNKTAR 1530 Query: 196 SVVFVTHDLEEAIALADRVFVL 217 +++ TH L+EA L+DR+ L Sbjct: 1531 TIILSTHHLDEAEVLSDRIAFL 1552 >ENSP00000339744 pep:known-ccds chromosome:NCBI36:21:42513077:42590421:1 gene:ENSG00000160179 transcript:ENST00000343687 CCDS13683.1 Length = 677 Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 59/217 (27%), Positives = 99/217 (45%), Gaps = 12/217 (5%) Query: 12 IEFRNVSCRFISPEG------KATVALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGL 65 IEFR++S + PEG L+ S GE +AI+GP+G GKST +N++ G Sbjct: 88 IEFRDLS--YSVPEGPWWRKKGYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGY 145 Query: 66 LKP-VSGEVRVMGRPVD--GIDPRIGFVFQADAVFPWRNVIDNVAAGPLFRGRSKDVAYT 122 + + G V + G P D ++ Q D + P V + + + + KD Sbjct: 146 RETGMKGAVLINGLPRDLRCFRKVSCYIMQDDMLLPHLTVQEAMMVSAHLKLQEKDEGRR 205 Query: 123 Q-AEEWIRKVGLDKFTKHYPHQLSGGMRKRVALAQTFINQPEILLMDEPFSALDMQTRTL 181 + +E + +GL LSGG RKR+A+A +N P ++ DEP S LD + Sbjct: 206 EMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQ 265 Query: 182 MQDELLQLWSANKGSVVFVTHDLEEAIALADRVFVLT 218 + + L + + + + L D+++VL+ Sbjct: 266 VVSLMKGLAQGGRSIICTIHQPSAKLFELFDQLYVLS 302 >ENSP00000354995 pep:known-ccds chromosome:NCBI36:21:42512336:42590421:1 gene:ENSG00000160179 transcript:ENST00000361802 CCDS13682.1 Length = 678 Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 62/221 (28%), Positives = 101/221 (45%), Gaps = 20/221 (9%) Query: 12 IEFRNVSCRFISPEG------KATVALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGL 65 IEFR++S + PEG L+ S GE +AI+GP+G GKST +N++ G Sbjct: 77 IEFRDLS--YSVPEGPWWRKKGYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGY 134 Query: 66 LKP-VSGEVRVMGRPVD--GIDPRIGFVFQADAVFPWRNVIDNVAAGPLFRGRSKDVAYT 122 + + G V + G P D ++ Q D + P V + + + + KD Sbjct: 135 RETGMKGAVLINGLPRDLRCFRKVSCYIMQDDMLLPHLTVQEAMMVSAHLKLQEKDEGRR 194 Query: 123 Q-AEEWIRKVGLDKFTKHYPHQLSGGMRKRVALAQTFINQPEILLMDEPFSALD----MQ 177 + +E + +GL LSGG RKR+A+A +N P ++ DEP S LD Q Sbjct: 195 EMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQ 254 Query: 178 TRTLMQDELLQLWSANKGSVVFVTHDLEEAIALADRVFVLT 218 +LM+ L + + + + L D+++VL+ Sbjct: 255 VVSLMKG----LAQGGRSIICTIHQPSAKLFELFDQLYVLS 291 >ENSP00000291524 pep:known-ccds chromosome:NCBI36:21:42509335:42590421:1 gene:ENSG00000160179 transcript:ENST00000347800 CCDS13681.1 Length = 663 Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 62/221 (28%), Positives = 101/221 (45%), Gaps = 20/221 (9%) Query: 12 IEFRNVSCRFISPEG------KATVALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGL 65 IEFR++S + PEG L+ S GE +AI+GP+G GKST +N++ G Sbjct: 74 IEFRDLS--YSVPEGPWWRKKGYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGY 131 Query: 66 LKP-VSGEVRVMGRPVD--GIDPRIGFVFQADAVFPWRNVIDNVAAGPLFRGRSKDVAYT 122 + + G V + G P D ++ Q D + P V + + + + KD Sbjct: 132 RETGMKGAVLINGLPRDLRCFRKVSCYIMQDDMLLPHLTVQEAMMVSAHLKLQEKDEGRR 191 Query: 123 Q-AEEWIRKVGLDKFTKHYPHQLSGGMRKRVALAQTFINQPEILLMDEPFSALD----MQ 177 + +E + +GL LSGG RKR+A+A +N P ++ DEP S LD Q Sbjct: 192 EMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQ 251 Query: 178 TRTLMQDELLQLWSANKGSVVFVTHDLEEAIALADRVFVLT 218 +LM+ L + + + + L D+++VL+ Sbjct: 252 VVSLMKG----LAQGGRSIICTIHQPSAKLFELFDQLYVLS 288 >ENSP00000344339 pep:known chromosome:NCBI36:12:121982141:122016902:-1 gene:ENSG00000150967 transcript:ENST00000344275 Length = 453 Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 86/167 (51%), Gaps = 11/167 (6%) Query: 31 ALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKPVSGEVRVMGRPVDGIDPR---- 86 + + S S++ G+ A+VGP+G GKS+ +N++ G V + G+P+ D + Sbjct: 267 CMENVSFSLSPGKVTALVGPSGSGKSSCVNILENFYPLEGGRVLLDGKPISAYDHKYLHR 326 Query: 87 -IGFVFQADAVFPWRNVIDNVAAG-PL--FRGRSKDVAYTQAEEWIRKV--GLDKFTKHY 140 I V Q +F R++ DN++ G P F + A +I ++ G T Sbjct: 327 VISLVSQEPVLFA-RSITDNISYGLPTVPFEMVVEAAQKANAHGFIMELQDGYSTETGEK 385 Query: 141 PHQLSGGMRKRVALAQTFINQPEILLMDEPFSALDMQTRTLMQDELL 187 QLSGG ++RVA+A+ + P +L++DE SALD ++ L+ ++ Sbjct: 386 GAQLSGGQKQRVAMARALVRNPPVLILDEATSALDAESEYLVSHRVV 432 >ENSP00000304111 pep:known-ccds chromosome:NCBI36:11:118524960:118538582:1 gene:ENSG00000172350 transcript:ENST00000307417 CCDS8415.1 Length = 646 Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 54/204 (26%), Positives = 94/204 (46%), Gaps = 12/204 (5%) Query: 32 LRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKP-VSGEVRVMGRP--VDGIDPRIG 88 L+ S R E I I+GP+G GKST +N++ G + + G++ V GRP + Sbjct: 85 LKCLSGKFCRRELIGIMGPSGAGKSTFMNILAGYRESGMKGQILVNGRPRELRTFRKMSC 144 Query: 89 FVFQADAVFPWRNVIDNV-AAGPLFRGRSKDVAYTQAEEWIRKVGLDKFTKHYPHQLSGG 147 ++ Q D + P V++ + + L ++V E + +GL + LSGG Sbjct: 145 YIMQDDMLLPHLTVLEAMMVSANLKLSEKQEVKKELVTEILTALGLMSCSHTRTALLSGG 204 Query: 148 MRKRVALAQTFINQPEILLMDEPFSALD----MQTRTLMQDELLQLWSANKGSVVFVTHD 203 RKR+A+A +N P ++ DEP S LD Q +LM+ L + + + Sbjct: 205 QRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKS----LAQGGRTIICTIHQP 260 Query: 204 LEEAIALADRVFVLTARPATLKRV 227 + + D++++L+ K V Sbjct: 261 SAKLFEMFDKLYILSQGQCIFKGV 284 >ENSP00000343820 pep:known chromosome:NCBI36:21:42549263:42590421:1 gene:ENSG00000160179 transcript:ENST00000340588 Length = 825 Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 54/198 (27%), Positives = 92/198 (46%), Gaps = 5/198 (2%) Query: 25 EGKATVALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLLKP-VSGEVRVMGRPVD-- 81 EG T+ L+ S GE +AI+GP+G GKST +N++ G + + G V + G P D Sbjct: 242 EGYKTL-LKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETGMKGAVLINGLPRDLR 300 Query: 82 GIDPRIGFVFQADAVFPWRNVIDNVAAGPLFRGRSKDVAYTQ-AEEWIRKVGLDKFTKHY 140 ++ Q D + P V + + + + KD + +E + +GL Sbjct: 301 CFRKVSCYIMQDDMLLPHLTVQEAMMVSAHLKLQEKDEGRREMVKEILTALGLLSCANTR 360 Query: 141 PHQLSGGMRKRVALAQTFINQPEILLMDEPFSALDMQTRTLMQDELLQLWSANKGSVVFV 200 LSGG RKR+A+A +N P ++ DEP S LD + + + L + + + Sbjct: 361 TGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKGLAQGGRSIICTI 420 Query: 201 THDLEEAIALADRVFVLT 218 + L D+++VL+ Sbjct: 421 HQPSAKLFELFDQLYVLS 438 >ENSP00000272286 pep:known-ccds chromosome:NCBI36:2:43919607:43959108:1 gene:ENSG00000143921 transcript:ENST00000272286 CCDS1815.1 Length = 673 Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/210 (26%), Positives = 99/210 (47%), Gaps = 13/210 (6%) Query: 23 SPEGKATVALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLL---KPVSGEVRVMGRP 79 S + + +++ S V G+ +AI+G +GCG+++ L++ITG K SG++ + G+P Sbjct: 79 SCQNSCELGIQNLSFKVRSGQMLAIIGSSGCGRASLLDVITGRGHGGKIKSGQIWINGQP 138 Query: 80 VDG--IDPRIGFVFQADAVFPWRNVIDNVAAGPLFR--------GRSKDVAYTQAEEWIR 129 + + V Q + + P V + +A R R K V AE +R Sbjct: 139 SSPQLVRKCVAHVRQHNQLLPNLTVRETLAFIAQMRLPRTFSQAQRDKRVEDVIAELRLR 198 Query: 130 KVGLDKFTKHYPHQLSGGMRKRVALAQTFINQPEILLMDEPFSALDMQTRTLMQDELLQL 189 + + Y LSGG R+RV++ + P IL++DEP S LD T + L +L Sbjct: 199 QCADTRVGNMYVRGLSGGERRRVSIGVQLLWNPGILILDEPTSGLDSFTAHNLVKTLSRL 258 Query: 190 WSANKGSVVFVTHDLEEAIALADRVFVLTA 219 N+ ++ + + L D V ++T+ Sbjct: 259 AKGNRLVLISLHQPRSDIFRLFDLVLLMTS 288 >ENSP00000367842 pep:known-ccds chromosome:NCBI36:2:43919607:43959109:1 gene:ENSG00000143921 transcript:ENST00000378579 CCDS1815.1 Length = 673 Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/210 (26%), Positives = 99/210 (47%), Gaps = 13/210 (6%) Query: 23 SPEGKATVALRDFSMSVARGEFIAIVGPTGCGKSTTLNLITGLL---KPVSGEVRVMGRP 79 S + + +++ S V G+ +AI+G +GCG+++ L++ITG K SG++ + G+P Sbjct: 79 SCQNSCELGIQNLSFKVRSGQMLAIIGSSGCGRASLLDVITGRGHGGKIKSGQIWINGQP 138 Query: 80 VDG--IDPRIGFVFQADAVFPWRNVIDNVAAGPLFR--------GRSKDVAYTQAEEWIR 129 + + V Q + + P V + +A R R K V AE +R Sbjct: 139 SSPQLVRKCVAHVRQHNQLLPNLTVRETLAFIAQMRLPRTFSQAQRDKRVEDVIAELRLR 198 Query: 130 KVGLDKFTKHYPHQLSGGMRKRVALAQTFINQPEILLMDEPFSALDMQTRTLMQDELLQL 189 + + Y LSGG R+RV++ + P IL++DEP S LD T + L +L Sbjct: 199 QCADTRVGNMYVRGLSGGERRRVSIGVQLLWNPGILILDEPTSGLDSFTAHNLVKTLSRL 258 Query: 190 WSANKGSVVFVTHDLEEAIALADRVFVLTA 219 N+ ++ + +